Wall clock time and date at job start Tue Mar 31 2020 07:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 N 1.46499 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99713 * 266.66556 * 4 3 2 6 6 H 1.08002 * 120.00144 * 338.15527 * 5 4 3 7 7 C 1.38819 * 120.00053 * 158.15578 * 5 4 3 8 8 N 1.31619 * 119.99961 * 5.18059 * 7 5 4 9 9 Si 1.86796 * 119.99897 * 185.17924 * 7 5 4 10 10 H 1.48504 * 109.47128 * 90.00216 * 9 7 5 11 11 H 1.48500 * 109.47156 * 209.99975 * 9 7 5 12 12 H 1.48499 * 109.47177 * 330.00067 * 9 7 5 13 13 C 1.46498 * 120.00354 * 86.66281 * 4 3 2 14 14 C 1.50700 * 109.47135 * 270.00340 * 13 4 3 15 15 O 1.21300 * 120.00035 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00242 * 180.02562 * 14 13 4 17 17 C 1.40110 * 120.00396 * 185.13231 * 16 14 13 18 18 C 1.38845 * 120.01552 * 213.78176 * 17 16 14 19 19 C 1.38088 * 119.98548 * 180.25120 * 18 17 16 20 20 C 1.38726 * 120.01267 * 359.44918 * 19 18 17 21 21 O 1.35974 * 119.98255 * 180.29774 * 20 19 18 22 22 C 1.42899 * 116.99493 * 179.97438 * 21 20 19 23 23 C 1.38722 * 120.03147 * 0.27102 * 20 19 18 24 24 C 1.38093 * 120.00907 * 0.02562 * 23 20 19 25 25 H 1.09001 * 109.47153 * 59.99907 * 1 2 3 26 26 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47037 * 300.00176 * 1 2 3 28 28 H 1.09003 * 109.46588 * 239.99789 * 2 1 3 29 29 H 1.09001 * 109.47153 * 120.00093 * 2 1 3 30 30 H 1.08992 * 109.47286 * 59.99976 * 3 2 1 31 31 H 1.09001 * 109.47160 * 300.00089 * 3 2 1 32 32 H 0.96993 * 120.00157 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47450 * 150.00297 * 13 4 3 34 34 H 1.08993 * 109.47312 * 29.99921 * 13 4 3 35 35 H 0.97002 * 119.99564 * 5.12799 * 16 14 13 36 36 H 1.08002 * 120.00890 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99857 * 179.72077 * 19 18 17 38 38 H 1.08998 * 109.47020 * 60.00181 * 22 21 20 39 39 H 1.09003 * 109.46968 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47554 * 300.00128 * 22 21 20 41 41 H 1.07998 * 119.99344 * 180.02562 * 23 20 19 42 42 H 1.07999 * 120.00260 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5113 1.1831 6 1 3.7087 1.9110 2.0633 7 6 5.5036 1.0672 1.2516 8 7 6.1238 0.6755 0.1588 9 14 6.3909 1.0258 2.8949 10 1 6.1729 -0.2930 3.5420 11 1 7.8448 1.2363 2.6778 12 1 5.8604 2.1009 3.7711 13 6 4.2371 1.3688 -1.2674 14 6 4.4881 -0.0749 -1.6194 15 8 4.0946 -0.9557 -0.8840 16 7 5.1506 -0.3874 -2.7507 17 6 5.2904 -1.7280 -3.1331 18 6 6.4405 -2.1470 -3.7885 19 6 6.5755 -3.4673 -4.1698 20 6 5.5671 -4.3774 -3.8880 21 8 5.7033 -5.6787 -4.2584 22 6 4.6264 -6.5609 -3.9358 23 6 4.4203 -3.9608 -3.2281 24 6 4.2815 -2.6394 -2.8517 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 7.0416 0.3655 0.2066 33 1 5.1895 1.8893 -1.1676 34 1 3.6478 1.8376 -2.0554 35 1 5.5306 0.3159 -3.3001 36 1 7.2276 -1.4394 -4.0041 37 1 7.4680 -3.7925 -4.6836 38 1 3.7140 -6.2126 -4.4197 39 1 4.8624 -7.5657 -4.2865 40 1 4.4813 -6.5775 -2.8557 41 1 3.6359 -4.6699 -3.0086 42 1 3.3888 -2.3152 -2.3375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:55 Heat of formation + Delta-G solvation = -17.898807 kcal Electronic energy + Delta-G solvation = -23998.627124 eV Core-core repulsion = 20559.269102 eV Total energy + Delta-G solvation = -3439.358022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -39.97035 -38.73644 -36.94186 -35.48018 -33.26018 -32.89626 -30.74552 -30.54602 -28.98318 -27.39251 -26.23813 -25.50615 -22.77093 -22.24264 -21.38598 -20.13022 -19.31750 -17.91546 -17.27425 -16.48450 -16.01832 -15.57898 -15.30084 -15.11936 -14.30572 -14.13324 -13.86346 -13.54490 -13.31120 -13.18947 -12.89695 -12.77114 -12.36234 -12.34308 -12.11720 -11.73455 -11.50452 -11.21780 -11.06578 -10.97423 -10.76620 -10.59674 -10.58189 -10.30582 -10.06102 -9.87784 -9.63755 -9.08148 -8.80688 -8.64376 -8.26546 -7.09489 -6.83985 -5.83579 -3.22296 1.68859 1.84165 3.38902 3.45180 3.46762 3.47023 3.97740 4.06546 4.40037 4.58342 5.04065 5.15598 5.18331 5.28845 5.36135 5.45730 5.50270 5.68193 5.71247 5.79657 5.83428 5.93395 6.13769 6.19865 6.27447 6.33965 6.42203 6.50969 6.57261 6.62079 6.73398 6.79555 6.89345 6.97026 7.10487 7.25826 7.39899 7.50960 7.72510 7.78332 8.30303 8.52979 9.16581 9.63218 9.81841 10.25156 11.24674 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.004971 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.999929 B = 5631.740929 C = 6528.706922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.150 3.850 4 N -0.578 5.578 5 C -0.241 4.241 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.912 5.912 9 Si 0.912 3.088 10 H -0.289 1.289 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.168 3.832 14 C 0.529 3.471 15 O -0.515 6.515 16 N -0.691 5.691 17 C 0.151 3.849 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.085 3.915 21 O -0.325 6.325 22 C 0.030 3.970 23 C -0.185 4.185 24 C -0.089 4.089 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.117 0.883 34 H 0.030 0.970 35 H 0.398 0.602 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.122 0.878 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -5.313 -10.199 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.024 3.976 4 N -0.297 5.297 5 C -0.370 4.370 6 H 0.092 0.908 7 C -0.190 4.190 8 N -0.560 5.560 9 Si 0.742 3.258 10 H -0.216 1.216 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.037 3.963 14 C 0.318 3.682 15 O -0.388 6.388 16 N -0.337 5.337 17 C 0.055 3.945 18 C -0.145 4.145 19 C -0.151 4.151 20 C 0.040 3.960 21 O -0.239 6.239 22 C -0.065 4.065 23 C -0.204 4.204 24 C -0.110 4.110 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.232 0.768 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.627 -5.949 -9.634 11.889 hybrid contribution 0.693 -0.195 0.850 1.114 sum -2.934 -6.144 -8.783 11.113 Atomic orbital electron populations 1.21790 0.98174 1.00212 1.00479 1.22156 0.92448 1.00385 1.02872 1.20948 0.84294 0.93945 0.98461 1.43795 0.99691 1.83878 1.02303 1.19278 0.95024 1.34014 0.88675 0.90782 1.24898 0.97945 0.98898 0.97251 1.69558 1.11992 1.48678 1.25726 0.86135 0.78476 0.77769 0.83372 1.21608 1.21844 1.20672 1.20675 0.98709 0.90473 0.86410 1.22379 0.74501 0.94324 0.77021 1.90509 1.50663 1.50126 1.47471 1.44132 1.58813 1.04267 1.26479 1.17830 0.93112 0.86405 0.97202 1.20728 0.96188 0.95241 1.02348 1.20081 0.98551 0.91722 1.04718 1.18866 0.95352 0.83433 0.98341 1.86011 1.43569 1.17047 1.77251 1.22951 0.89760 0.93083 1.00738 1.21058 0.98127 0.97190 1.04074 1.20971 0.99017 0.92077 0.98942 0.93784 0.94003 0.93574 0.92218 0.92112 0.93501 0.94902 0.93444 0.86521 0.95251 0.76833 0.85479 0.85673 0.92992 0.88809 0.92882 0.85976 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.79 5.37 -26.73 -0.14 -2.94 16 3 C 0.15 3.09 5.71 -4.05 -0.02 3.07 16 4 N -0.58 -13.95 2.10 -174.62 -0.37 -14.32 16 5 C -0.24 -6.44 9.70 -15.06 -0.15 -6.58 16 6 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 7 C 0.01 0.17 5.39 -17.43 -0.09 0.08 16 8 N -0.91 -24.89 8.15 55.49 0.45 -24.44 16 9 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.17 3.74 5.47 -5.19 -0.03 3.71 16 14 C 0.53 11.93 5.26 -10.99 -0.06 11.87 16 15 O -0.52 -13.40 11.43 5.54 0.06 -13.34 16 16 N -0.69 -12.96 5.35 -9.83 -0.05 -13.01 16 17 C 0.15 2.79 6.28 -83.63 -0.53 2.26 16 18 C -0.12 -1.99 9.96 -39.41 -0.39 -2.38 16 19 C -0.13 -2.03 9.98 -39.46 -0.39 -2.42 16 20 C 0.08 1.35 6.69 -39.22 -0.26 1.09 16 21 O -0.32 -4.67 10.50 -19.66 -0.21 -4.88 16 22 C 0.03 0.31 9.81 101.05 0.99 1.30 16 23 C -0.19 -3.04 9.03 -39.46 -0.36 -3.40 16 24 C -0.09 -1.68 8.65 -39.41 -0.34 -2.02 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.30 6.39 -51.93 -0.33 0.96 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.05 0.94 7.99 -51.93 -0.41 0.53 16 31 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.12 2.80 6.30 -51.93 -0.33 2.47 16 34 H 0.03 0.57 7.92 -51.93 -0.41 0.16 16 35 H 0.40 6.20 8.82 -40.82 -0.36 5.84 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 41 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 42 H 0.14 2.76 6.42 -52.49 -0.34 2.42 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -31.32 341.95 -7.61 -38.93 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.22 Total: 7.12 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.40 Total: 1.67 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.03 Total: -51.76 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.14 Total: -18.21 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.32 -7.61 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.032 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds