Wall clock time and date at job start Tue Mar 31 2020 07:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 N 1.46499 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99713 * 266.66556 * 4 3 2 6 6 H 1.08002 * 120.00144 * 338.15527 * 5 4 3 7 7 C 1.38819 * 120.00053 * 158.15578 * 5 4 3 8 8 N 1.31619 * 119.99961 * 5.18059 * 7 5 4 9 9 Si 1.86796 * 119.99897 * 185.17924 * 7 5 4 10 10 H 1.48504 * 109.47128 * 90.00216 * 9 7 5 11 11 H 1.48500 * 109.47156 * 209.99975 * 9 7 5 12 12 H 1.48499 * 109.47177 * 330.00067 * 9 7 5 13 13 C 1.46498 * 120.00354 * 86.66281 * 4 3 2 14 14 C 1.50700 * 109.47135 * 270.00340 * 13 4 3 15 15 O 1.21300 * 120.00035 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00242 * 180.02562 * 14 13 4 17 17 C 1.40110 * 120.00396 * 185.13231 * 16 14 13 18 18 C 1.38845 * 120.01552 * 213.78176 * 17 16 14 19 19 C 1.38088 * 119.98548 * 180.25120 * 18 17 16 20 20 C 1.38726 * 120.01267 * 359.44918 * 19 18 17 21 21 O 1.35974 * 119.98255 * 180.29774 * 20 19 18 22 22 C 1.42899 * 116.99493 * 179.97438 * 21 20 19 23 23 C 1.38722 * 120.03147 * 0.27102 * 20 19 18 24 24 C 1.38093 * 120.00907 * 0.02562 * 23 20 19 25 25 H 1.09001 * 109.47153 * 59.99907 * 1 2 3 26 26 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47037 * 300.00176 * 1 2 3 28 28 H 1.09003 * 109.46588 * 239.99789 * 2 1 3 29 29 H 1.09001 * 109.47153 * 120.00093 * 2 1 3 30 30 H 1.08992 * 109.47286 * 59.99976 * 3 2 1 31 31 H 1.09001 * 109.47160 * 300.00089 * 3 2 1 32 32 H 0.96993 * 120.00157 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47450 * 150.00297 * 13 4 3 34 34 H 1.08993 * 109.47312 * 29.99921 * 13 4 3 35 35 H 0.97002 * 119.99564 * 5.12799 * 16 14 13 36 36 H 1.08002 * 120.00890 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99857 * 179.72077 * 19 18 17 38 38 H 1.08998 * 109.47020 * 60.00181 * 22 21 20 39 39 H 1.09003 * 109.46968 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47554 * 300.00128 * 22 21 20 41 41 H 1.07998 * 119.99344 * 180.02562 * 23 20 19 42 42 H 1.07999 * 120.00260 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5113 1.1831 6 1 3.7087 1.9110 2.0633 7 6 5.5036 1.0672 1.2516 8 7 6.1238 0.6755 0.1588 9 14 6.3909 1.0258 2.8949 10 1 6.1729 -0.2930 3.5420 11 1 7.8448 1.2363 2.6778 12 1 5.8604 2.1009 3.7711 13 6 4.2371 1.3688 -1.2674 14 6 4.4881 -0.0749 -1.6194 15 8 4.0946 -0.9557 -0.8840 16 7 5.1506 -0.3874 -2.7507 17 6 5.2904 -1.7280 -3.1331 18 6 6.4405 -2.1470 -3.7885 19 6 6.5755 -3.4673 -4.1698 20 6 5.5671 -4.3774 -3.8880 21 8 5.7033 -5.6787 -4.2584 22 6 4.6264 -6.5609 -3.9358 23 6 4.4203 -3.9608 -3.2281 24 6 4.2815 -2.6394 -2.8517 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 7.0416 0.3655 0.2066 33 1 5.1895 1.8893 -1.1676 34 1 3.6478 1.8376 -2.0554 35 1 5.5306 0.3159 -3.3001 36 1 7.2276 -1.4394 -4.0041 37 1 7.4680 -3.7925 -4.6836 38 1 3.7140 -6.2126 -4.4197 39 1 4.8624 -7.5657 -4.2865 40 1 4.4813 -6.5775 -2.8557 41 1 3.6359 -4.6699 -3.0086 42 1 3.3888 -2.3152 -2.3375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:52 Heat of formation + Delta-G solvation = -36.734709 kcal Electronic energy + Delta-G solvation = -23999.443910 eV Core-core repulsion = 20559.269102 eV Total energy + Delta-G solvation = -3440.174808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.29377 -40.20249 -38.38092 -37.14091 -34.83810 -34.61815 -32.40512 -32.00168 -30.37057 -28.70487 -27.56770 -27.25002 -24.30226 -23.70758 -22.76349 -21.75348 -20.97494 -19.16256 -18.92969 -18.08330 -17.53099 -17.05021 -16.68126 -16.54000 -15.93829 -15.64871 -15.44949 -15.00768 -14.85322 -14.62410 -14.50542 -14.14105 -13.81486 -13.59162 -13.54958 -13.23413 -12.92655 -12.81939 -12.76168 -12.51621 -12.27531 -12.21894 -12.08428 -11.86852 -11.79297 -11.71329 -11.27774 -10.74553 -10.51632 -10.18726 -9.88619 -8.73605 -8.47086 -7.86231 -5.24247 0.40106 0.50729 1.42838 1.47923 1.52695 2.37429 2.40872 2.52022 2.65415 3.02047 3.37766 3.71351 3.90407 3.95850 4.29325 4.31734 4.39108 4.40238 4.43905 4.50707 4.54932 4.69380 4.71746 4.74031 4.82453 4.91109 4.96281 5.08148 5.12301 5.21466 5.29092 5.39997 5.44262 5.48107 5.53621 5.62729 5.65949 5.76711 6.16732 6.36256 6.51287 6.96513 7.20434 7.83140 8.03244 8.29032 9.17955 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.004971 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.999929 B = 5631.740929 C = 6528.706922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.147 3.853 4 N -0.594 5.594 5 C -0.250 4.250 6 H 0.071 0.929 7 C -0.040 4.040 8 N -0.920 5.920 9 Si 0.961 3.039 10 H -0.306 1.306 11 H -0.292 1.292 12 H -0.268 1.268 13 C 0.167 3.833 14 C 0.531 3.469 15 O -0.556 6.556 16 N -0.680 5.680 17 C 0.122 3.878 18 C -0.117 4.117 19 C -0.133 4.133 20 C 0.088 3.912 21 O -0.332 6.332 22 C 0.020 3.980 23 C -0.190 4.190 24 C -0.109 4.109 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.020 0.980 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.244 0.756 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.052 0.948 41 H 0.140 0.860 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -5.769 -11.446 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.022 3.978 4 N -0.314 5.314 5 C -0.380 4.380 6 H 0.089 0.911 7 C -0.234 4.234 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.234 1.234 11 H -0.219 1.219 12 H -0.193 1.193 13 C 0.037 3.963 14 C 0.320 3.680 15 O -0.432 6.432 16 N -0.327 5.327 17 C 0.026 3.974 18 C -0.138 4.138 19 C -0.152 4.152 20 C 0.042 3.958 21 O -0.246 6.246 22 C -0.075 4.075 23 C -0.209 4.209 24 C -0.129 4.129 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.157 0.843 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.830 -6.392 -10.926 13.226 hybrid contribution 0.715 -0.164 1.151 1.365 sum -3.116 -6.556 -9.775 12.175 Atomic orbital electron populations 1.21688 0.94511 1.01307 1.02100 1.21953 0.95535 0.99328 0.99852 1.21105 0.82563 0.94340 0.99840 1.44000 1.01132 1.84075 1.02144 1.19484 0.95290 1.33518 0.89672 0.91114 1.25478 0.98846 0.99588 0.99503 1.69739 1.11321 1.49308 1.26410 0.85349 0.77543 0.76987 0.80952 1.23431 1.21879 1.19250 1.20664 0.98355 0.90520 0.86755 1.22303 0.74324 0.93987 0.77403 1.90492 1.52487 1.51084 1.49160 1.43792 1.58037 1.05231 1.25674 1.18041 0.94335 0.86051 0.98944 1.20963 0.95671 0.96131 1.01002 1.20439 0.99301 0.91301 1.04151 1.19035 0.94939 0.84432 0.97351 1.86014 1.45170 1.16411 1.77010 1.23278 0.89384 0.93742 1.01066 1.21201 0.99141 0.96546 1.04010 1.20886 0.98689 0.93423 0.99950 0.91679 0.93246 0.92348 0.94273 0.96146 0.93154 0.92233 0.94592 0.88328 0.91959 0.75162 0.83210 0.83036 0.91943 0.85804 0.92952 0.84276 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.43 16 2 C -0.13 -5.14 5.37 30.59 0.16 -4.98 16 3 C 0.15 5.97 5.71 86.38 0.49 6.46 16 4 N -0.59 -28.86 2.10 -706.37 -1.48 -30.35 16 5 C -0.25 -13.52 9.70 84.03 0.81 -12.71 16 6 H 0.07 3.77 7.80 -2.91 -0.02 3.75 16 7 C -0.04 -2.18 5.39 84.86 0.46 -1.72 16 8 N -0.92 -51.09 8.15 21.65 0.18 -50.92 16 9 Si 0.96 46.17 29.56 68.60 2.03 48.20 16 10 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.17 7.47 5.47 85.63 0.47 7.94 16 14 C 0.53 24.36 5.26 87.66 0.46 24.82 16 15 O -0.56 -29.97 11.43 -3.09 -0.04 -30.01 16 16 N -0.68 -25.66 5.35 -303.39 -1.62 -27.28 16 17 C 0.12 4.50 6.28 38.11 0.24 4.74 16 18 C -0.12 -3.60 9.96 22.38 0.22 -3.37 16 19 C -0.13 -3.82 9.98 22.35 0.22 -3.60 16 20 C 0.09 2.66 6.69 22.50 0.15 2.81 16 21 O -0.33 -8.78 10.50 -93.26 -0.98 -9.76 16 22 C 0.02 0.36 9.81 113.37 1.11 1.47 16 23 C -0.19 -6.15 9.03 22.35 0.20 -5.95 16 24 C -0.11 -4.16 8.65 22.38 0.19 -3.97 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.74 6.39 -2.39 -0.02 1.72 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.98 7.99 -2.39 -0.02 1.96 16 31 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 32 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.10 4.78 6.30 -2.39 -0.02 4.76 16 34 H 0.06 2.33 7.92 -2.39 -0.02 2.31 16 35 H 0.41 12.67 8.82 -92.71 -0.82 11.86 16 36 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 0.98 7.66 -2.39 -0.02 0.96 16 41 H 0.14 3.85 6.29 -2.91 -0.02 3.83 16 42 H 0.11 4.72 6.42 -2.91 -0.02 4.70 16 Total: -1.00 -68.93 341.95 4.21 -64.73 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.20 Total: 26.86 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 5.92 Total: 8.52 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -2.93 Total: -108.55 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.01 Total: -39.77 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -68.93 4.21 -64.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds