Wall clock time and date at job start Tue Mar 31 2020 06:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46788 * 2 1 4 4 H 1.09001 * 109.47280 * 55.00006 * 3 2 1 5 5 C 1.53005 * 109.47104 * 175.00214 * 3 2 1 6 6 N 1.46502 * 109.47438 * 295.00166 * 3 2 1 7 7 C 1.46495 * 119.99954 * 300.00211 * 6 3 2 8 8 C 1.34771 * 120.00019 * 120.00100 * 6 3 2 9 9 O 1.21591 * 120.00298 * 0.02562 * 8 6 3 10 10 N 1.34777 * 120.00048 * 180.02562 * 8 6 3 11 11 C 1.39946 * 120.00101 * 174.46047 * 10 8 6 12 12 C 1.38955 * 120.03595 * 325.02077 * 11 10 8 13 13 C 1.38157 * 120.07046 * 180.29767 * 12 11 10 14 14 C 1.38180 * 120.13605 * 359.95017 * 13 12 11 15 15 C 1.38907 * 120.06446 * 0.05099 * 14 13 12 16 16 O 1.35755 * 120.02760 * 179.97438 * 15 14 13 17 17 C 1.34834 * 116.99687 * 185.61763 * 16 15 14 18 18 H 1.07999 * 120.00335 * 5.35121 * 17 16 15 19 19 C 1.38652 * 119.99727 * 185.35052 * 17 16 15 20 20 N 1.31559 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47369 * 59.99512 * 21 19 17 23 23 H 1.48497 * 109.47101 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46845 * 300.00016 * 21 19 17 25 25 C 1.38705 * 120.03655 * 145.29294 * 11 10 8 26 26 H 1.09003 * 109.46669 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46838 * 299.99820 * 1 2 3 28 28 H 1.08998 * 109.47307 * 59.99617 * 1 2 3 29 29 H 1.09004 * 109.47256 * 240.00806 * 2 1 3 30 30 H 1.09001 * 109.47714 * 120.00065 * 2 1 3 31 31 H 1.08998 * 109.47072 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.46781 * 300.00299 * 5 3 2 33 33 H 1.08993 * 109.47084 * 59.99991 * 5 3 2 34 34 H 1.09004 * 109.47326 * 269.99872 * 7 6 3 35 35 H 1.09004 * 109.47543 * 29.99782 * 7 6 3 36 36 H 1.09001 * 109.47179 * 150.00017 * 7 6 3 37 37 H 0.96994 * 119.99950 * 354.46340 * 10 8 6 38 38 H 1.07997 * 119.96879 * 0.27167 * 12 11 10 39 39 H 1.07997 * 119.93590 * 179.97438 * 13 12 11 40 40 H 1.07994 * 119.96655 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.00145 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.06562 * 359.70586 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6523 2.0976 -1.2518 7 6 2.1137 1.5591 -2.5337 8 6 0.8712 3.1955 -1.2240 9 8 0.4886 3.6428 -0.1601 10 7 0.5142 3.7979 -2.3756 11 6 -0.3892 4.8665 -2.3556 12 6 -1.4287 4.8812 -1.4337 13 6 -2.3246 5.9328 -1.4173 14 6 -2.1895 6.9733 -2.3164 15 6 -1.1524 6.9643 -3.2405 16 8 -1.0207 7.9867 -4.1238 17 6 -0.0660 7.8611 -5.0675 18 1 0.4934 6.9410 -5.1507 19 6 0.1977 8.9131 -5.9313 20 7 -0.4840 10.0338 -5.8304 21 14 1.5199 8.7389 -7.2393 22 1 1.1776 7.6106 -8.1420 23 1 1.6059 9.9950 -8.0266 24 1 2.8279 8.4726 -6.5884 25 6 -0.2512 5.9093 -3.2597 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9280 2.4722 0.1261 32 1 3.8532 0.9571 1.0570 33 1 3.9994 0.9055 -0.7161 34 1 3.0651 2.0197 -2.7999 35 1 2.2435 0.4802 -2.4491 36 1 1.3760 1.7769 -3.3059 37 1 0.8834 3.4907 -3.2183 38 1 -1.5368 4.0696 -0.7294 39 1 -3.1320 5.9418 -0.7001 40 1 -2.8912 7.7941 -2.3009 41 1 -0.2993 10.7699 -6.4345 42 1 0.5562 5.9003 -3.9770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047551611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:00 Heat of formation + Delta-G solvation = -25.786178 kcal Electronic energy + Delta-G solvation = -23403.800738 eV Core-core repulsion = 19964.100694 eV Total energy + Delta-G solvation = -3439.700044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62033 -38.90080 -37.33732 -36.07497 -34.43894 -32.92414 -32.18010 -30.23867 -29.15831 -28.35300 -27.05968 -25.28757 -24.08787 -22.56645 -21.76855 -20.64351 -19.38137 -18.58398 -17.88449 -17.15149 -16.29485 -15.88947 -15.26141 -14.98027 -14.48620 -14.24246 -14.01832 -13.87880 -13.83327 -13.56513 -13.48610 -13.21429 -12.96286 -12.68358 -12.43785 -12.31804 -11.92674 -11.74126 -11.49660 -11.36200 -11.20789 -11.09421 -10.92317 -10.87629 -10.77311 -10.46179 -9.93321 -9.61451 -9.42978 -8.79417 -8.74790 -7.66879 -7.10172 -6.42735 -4.02462 2.09771 2.43396 2.62543 3.12170 3.13411 3.16573 3.33758 3.92710 3.97683 4.51570 4.64416 4.80350 4.82691 4.87915 5.12184 5.18321 5.19130 5.28173 5.31917 5.37133 5.43027 5.59562 5.64938 5.73917 5.75784 5.91947 5.96115 6.04455 6.10069 6.13765 6.25935 6.30639 6.44817 6.64399 6.84825 7.04739 7.13395 7.27169 7.37289 7.46339 7.86655 7.99380 8.01995 8.67233 9.02560 9.73807 10.75421 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003775 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.762500 B = 7415.898354 C = 8451.268468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.150 3.850 4 H 0.104 0.896 5 C -0.161 4.161 6 N -0.626 5.626 7 C 0.074 3.926 8 C 0.706 3.294 9 O -0.570 6.570 10 N -0.683 5.683 11 C 0.199 3.801 12 C -0.203 4.203 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.089 0.911 19 C 0.040 3.960 20 N -0.863 5.863 21 Si 0.939 3.061 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.258 4.258 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.270 0.730 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -19.626 6.830 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.046 3.954 4 H 0.122 0.878 5 C -0.220 4.220 6 N -0.364 5.364 7 C -0.069 4.069 8 C 0.408 3.592 9 O -0.446 6.446 10 N -0.331 5.331 11 C 0.105 3.895 12 C -0.224 4.224 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.106 0.894 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.279 4.279 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.548 -18.898 7.464 21.063 hybrid contribution 1.091 -0.313 -1.243 1.683 sum 6.639 -19.211 6.222 21.256 Atomic orbital electron populations 1.21702 0.95264 1.01111 1.02526 1.21910 0.96836 0.96085 1.02264 1.21022 0.94604 0.92905 0.86835 0.87811 1.22152 0.95238 1.02560 1.02029 1.47059 1.53653 1.28505 1.07194 1.21721 0.99839 1.00186 0.85197 1.15830 0.79044 0.80045 0.84298 1.90930 1.59135 1.65681 1.28837 1.42755 1.47395 1.34528 1.08402 1.17191 0.88750 0.86541 0.97037 1.20529 0.96800 1.01825 1.03282 1.20521 0.97686 0.92991 0.96971 1.20233 1.00718 1.01587 0.99685 1.19059 0.92399 0.87689 0.89342 1.84023 1.51405 1.36249 1.36350 1.21213 1.15302 1.01452 1.08864 0.89367 1.25263 0.98315 0.94424 0.98460 1.70026 1.38904 1.03749 1.37134 0.85813 0.79966 0.78088 0.79718 1.19554 1.20272 1.19612 1.20781 1.04813 0.95948 1.06403 0.92994 0.92472 0.92722 0.91773 0.90870 0.92126 0.91465 0.92462 0.92566 0.90598 0.91426 0.76231 0.86421 0.86675 0.86425 0.91995 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.80 37.16 0.36 -1.02 16 2 C -0.13 -1.05 5.36 -26.73 -0.14 -1.19 16 3 C 0.15 1.51 2.64 -67.93 -0.18 1.33 16 4 H 0.10 1.30 6.90 -51.93 -0.36 0.94 16 5 C -0.16 -1.32 9.19 37.16 0.34 -0.98 16 6 N -0.63 -7.19 2.21 -179.66 -0.40 -7.59 16 7 C 0.07 0.60 9.21 59.84 0.55 1.15 16 8 C 0.71 11.23 8.00 -86.92 -0.70 10.53 16 9 O -0.57 -11.13 13.47 5.29 0.07 -11.06 16 10 N -0.68 -10.94 5.17 -14.24 -0.07 -11.01 16 11 C 0.20 3.93 6.24 -83.71 -0.52 3.41 16 12 C -0.20 -4.03 8.66 -39.35 -0.34 -4.38 16 13 C -0.06 -1.22 10.03 -39.63 -0.40 -1.61 16 14 C -0.20 -4.43 9.99 -39.36 -0.39 -4.83 16 15 C 0.17 4.17 6.64 -39.14 -0.26 3.91 16 16 O -0.18 -5.08 9.76 0.02 0.00 -5.08 16 17 C -0.39 -10.94 9.44 30.89 0.29 -10.65 16 18 H 0.09 2.26 5.29 -52.49 -0.28 1.98 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 21 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.26 -5.70 9.05 -39.21 -0.35 -6.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 29 H 0.06 0.44 6.48 -51.93 -0.34 0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.46 6.34 -51.93 -0.33 0.13 16 36 H 0.07 0.51 6.45 -51.93 -0.33 0.18 16 37 H 0.40 5.21 6.63 -40.82 -0.27 4.94 16 38 H 0.12 2.30 6.53 -52.49 -0.34 1.96 16 39 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 2.78 5.71 -52.48 -0.30 2.48 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -33.33 343.94 -7.18 -40.52 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.87 Total: 7.70 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.83 Total: -9.39 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.29 Total: -43.23 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.07 Total: -16.14 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.33 -7.18 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047551611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.731 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds