Wall clock time and date at job start Tue Mar 31 2020 06:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46788 * 2 1 4 4 H 1.09001 * 109.47280 * 55.00006 * 3 2 1 5 5 C 1.53005 * 109.47104 * 175.00214 * 3 2 1 6 6 N 1.46502 * 109.47438 * 295.00166 * 3 2 1 7 7 C 1.46495 * 119.99954 * 300.00211 * 6 3 2 8 8 C 1.34771 * 120.00019 * 120.00100 * 6 3 2 9 9 O 1.21591 * 120.00298 * 0.02562 * 8 6 3 10 10 N 1.34777 * 120.00048 * 180.02562 * 8 6 3 11 11 C 1.39946 * 120.00101 * 174.46047 * 10 8 6 12 12 C 1.38955 * 120.03595 * 325.02077 * 11 10 8 13 13 C 1.38157 * 120.07046 * 180.29767 * 12 11 10 14 14 C 1.38180 * 120.13605 * 359.95017 * 13 12 11 15 15 C 1.38907 * 120.06446 * 0.05099 * 14 13 12 16 16 O 1.35755 * 120.02760 * 179.97438 * 15 14 13 17 17 C 1.34834 * 116.99687 * 185.61763 * 16 15 14 18 18 H 1.07999 * 120.00335 * 5.35121 * 17 16 15 19 19 C 1.38652 * 119.99727 * 185.35052 * 17 16 15 20 20 N 1.31559 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47369 * 59.99512 * 21 19 17 23 23 H 1.48497 * 109.47101 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46845 * 300.00016 * 21 19 17 25 25 C 1.38705 * 120.03655 * 145.29294 * 11 10 8 26 26 H 1.09003 * 109.46669 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46838 * 299.99820 * 1 2 3 28 28 H 1.08998 * 109.47307 * 59.99617 * 1 2 3 29 29 H 1.09004 * 109.47256 * 240.00806 * 2 1 3 30 30 H 1.09001 * 109.47714 * 120.00065 * 2 1 3 31 31 H 1.08998 * 109.47072 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.46781 * 300.00299 * 5 3 2 33 33 H 1.08993 * 109.47084 * 59.99991 * 5 3 2 34 34 H 1.09004 * 109.47326 * 269.99872 * 7 6 3 35 35 H 1.09004 * 109.47543 * 29.99782 * 7 6 3 36 36 H 1.09001 * 109.47179 * 150.00017 * 7 6 3 37 37 H 0.96994 * 119.99950 * 354.46340 * 10 8 6 38 38 H 1.07997 * 119.96879 * 0.27167 * 12 11 10 39 39 H 1.07997 * 119.93590 * 179.97438 * 13 12 11 40 40 H 1.07994 * 119.96655 * 180.02562 * 14 13 12 41 41 H 0.97000 * 120.00145 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.06562 * 359.70586 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 1.6523 2.0976 -1.2518 7 6 2.1137 1.5591 -2.5337 8 6 0.8712 3.1955 -1.2240 9 8 0.4886 3.6428 -0.1601 10 7 0.5142 3.7979 -2.3756 11 6 -0.3892 4.8665 -2.3556 12 6 -1.4287 4.8812 -1.4337 13 6 -2.3246 5.9328 -1.4173 14 6 -2.1895 6.9733 -2.3164 15 6 -1.1524 6.9643 -3.2405 16 8 -1.0207 7.9867 -4.1238 17 6 -0.0660 7.8611 -5.0675 18 1 0.4934 6.9410 -5.1507 19 6 0.1977 8.9131 -5.9313 20 7 -0.4840 10.0338 -5.8304 21 14 1.5199 8.7389 -7.2393 22 1 1.1776 7.6106 -8.1420 23 1 1.6059 9.9950 -8.0266 24 1 2.8279 8.4726 -6.5884 25 6 -0.2512 5.9093 -3.2597 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9280 2.4722 0.1261 32 1 3.8532 0.9571 1.0570 33 1 3.9994 0.9055 -0.7161 34 1 3.0651 2.0197 -2.7999 35 1 2.2435 0.4802 -2.4491 36 1 1.3760 1.7769 -3.3059 37 1 0.8834 3.4907 -3.2183 38 1 -1.5368 4.0696 -0.7294 39 1 -3.1320 5.9418 -0.7001 40 1 -2.8912 7.7941 -2.3009 41 1 -0.2993 10.7699 -6.4345 42 1 0.5562 5.9003 -3.9770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047551611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:59 Heat of formation + Delta-G solvation = -46.387117 kcal Electronic energy + Delta-G solvation = -23404.694062 eV Core-core repulsion = 19964.100694 eV Total energy + Delta-G solvation = -3440.593368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88408 -40.58528 -38.69891 -37.51001 -35.83216 -34.29059 -33.79197 -31.15063 -30.71159 -29.93676 -27.88265 -27.28119 -24.93287 -23.79551 -23.49446 -21.94562 -20.57454 -19.82906 -19.58820 -18.80747 -17.46656 -17.03785 -16.76639 -16.66277 -16.03826 -15.79289 -15.53165 -15.18801 -14.94698 -14.70503 -14.53937 -14.35052 -14.15190 -13.94797 -13.56459 -13.40903 -13.22481 -13.03516 -12.77044 -12.62666 -12.57754 -12.45752 -12.14419 -12.07771 -11.90742 -11.62699 -11.45103 -11.30881 -11.06840 -10.72041 -9.73570 -9.31127 -8.83819 -8.45445 -6.14408 0.44872 0.71032 1.36142 1.47007 1.50648 1.52840 2.04057 2.18960 2.83879 2.85528 3.18167 3.49898 3.77636 4.10164 4.11226 4.16541 4.21086 4.33068 4.44375 4.49661 4.55202 4.59841 4.64033 4.72665 4.73452 4.81421 4.94343 4.97938 5.03134 5.09604 5.11419 5.17930 5.28976 5.30532 5.41979 5.48259 5.64270 5.67599 5.69833 5.91510 6.02350 6.20487 6.80705 6.98650 7.42915 7.78295 8.77495 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003775 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.762500 B = 7415.898354 C = 8451.268468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.144 3.856 4 H 0.073 0.927 5 C -0.154 4.154 6 N -0.615 5.615 7 C 0.064 3.936 8 C 0.700 3.300 9 O -0.612 6.612 10 N -0.676 5.676 11 C 0.205 3.795 12 C -0.198 4.198 13 C -0.050 4.050 14 C -0.215 4.215 15 C 0.137 3.863 16 O -0.226 6.226 17 C -0.415 4.415 18 H 0.103 0.897 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.258 1.258 25 C -0.261 4.261 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.416 0.584 38 H 0.126 0.874 39 H 0.154 0.846 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -23.000 6.783 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.040 3.960 4 H 0.091 0.909 5 C -0.212 4.212 6 N -0.352 5.352 7 C -0.078 4.078 8 C 0.402 3.598 9 O -0.491 6.491 10 N -0.325 5.325 11 C 0.110 3.890 12 C -0.219 4.219 13 C -0.069 4.069 14 C -0.235 4.235 15 C 0.085 3.915 16 O -0.132 6.132 17 C -0.491 4.491 18 H 0.120 0.880 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.283 4.283 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.356 -22.370 7.429 24.692 hybrid contribution 0.480 0.506 -0.994 1.214 sum 7.836 -21.864 6.436 24.101 Atomic orbital electron populations 1.21691 0.96560 1.01608 1.00680 1.21881 0.95521 0.94540 1.04227 1.21199 0.95916 0.93711 0.85131 0.90912 1.22100 0.93418 1.01839 1.03888 1.47165 1.51967 1.26792 1.09233 1.22031 1.00389 1.01923 0.83413 1.16028 0.79485 0.80903 0.83365 1.90897 1.60941 1.67144 1.30151 1.42627 1.46832 1.33554 1.09534 1.17209 0.89141 0.86775 0.95867 1.20807 0.96413 1.01909 1.02793 1.20902 0.98167 0.91472 0.96358 1.20464 1.00423 1.02673 0.99933 1.19566 0.94036 0.87941 0.89928 1.83989 1.52854 1.38377 1.37978 1.21774 1.15472 1.02450 1.09363 0.88002 1.26602 1.00818 0.93702 1.00847 1.70183 1.41573 1.05034 1.39044 0.84655 0.76626 0.78606 0.76376 1.17790 1.19807 1.18257 1.20791 1.04455 0.96034 1.07032 0.91298 0.94243 0.94647 0.89690 0.88903 0.94138 0.89682 0.90470 0.91345 0.87792 0.90963 0.74438 0.85649 0.82878 0.86177 0.91822 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.80 71.98 0.71 -1.77 16 2 C -0.12 -1.55 5.36 30.60 0.16 -1.39 16 3 C 0.14 2.60 2.64 44.99 0.12 2.72 16 4 H 0.07 1.80 6.90 -2.39 -0.02 1.78 16 5 C -0.15 -2.09 9.19 71.98 0.66 -1.43 16 6 N -0.62 -12.87 2.21 -840.60 -1.86 -14.73 16 7 C 0.06 0.81 9.21 127.77 1.18 1.99 16 8 C 0.70 21.54 8.00 179.06 1.43 22.97 16 9 O -0.61 -23.79 13.47 -4.00 -0.05 -23.84 16 10 N -0.68 -20.84 5.17 -317.23 -1.64 -22.48 16 11 C 0.21 8.03 6.24 38.13 0.24 8.26 16 12 C -0.20 -7.66 8.66 22.42 0.19 -7.47 16 13 C -0.05 -1.90 10.03 22.24 0.22 -1.68 16 14 C -0.22 -9.57 9.99 22.42 0.22 -9.35 16 15 C 0.14 6.96 6.64 22.56 0.15 7.11 16 16 O -0.23 -13.63 9.76 -22.83 -0.22 -13.85 16 17 C -0.41 -23.94 9.44 67.92 0.64 -23.30 16 18 H 0.10 5.32 5.29 -2.91 -0.02 5.31 16 19 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 20 N -0.92 -56.42 13.67 21.61 0.30 -56.12 16 21 Si 1.02 42.08 29.55 68.60 2.03 44.11 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 C -0.26 -11.70 9.05 22.51 0.20 -11.50 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.03 0.72 7.75 -2.39 -0.02 0.70 16 29 H 0.08 0.75 6.48 -2.39 -0.02 0.74 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.75 7.67 -2.39 -0.02 0.73 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.78 6.34 -2.38 -0.02 0.76 16 36 H 0.07 0.87 6.45 -2.39 -0.02 0.86 16 37 H 0.42 10.07 6.63 -92.71 -0.62 9.46 16 38 H 0.13 4.74 6.53 -2.91 -0.02 4.72 16 39 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.13 5.62 5.71 -2.91 -0.02 5.60 16 Total: -1.00 -76.94 343.94 5.57 -71.38 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.42 Total: 31.15 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 6.60 Total: -15.60 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.20 Total: -93.34 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.28 Total: -37.69 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -76.94 5.57 -71.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047551611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.989 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds