Wall clock time and date at job start Tue Mar 31 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47471 * 2 1 4 4 H 1.08995 * 109.47543 * 183.89638 * 3 2 1 5 5 C 1.50698 * 109.47216 * 303.89987 * 3 2 1 6 6 H 1.08005 * 119.99692 * 115.36077 * 5 3 2 7 7 C 1.37872 * 119.99928 * 295.35904 * 5 3 2 8 8 N 1.31512 * 119.99994 * 354.19132 * 7 5 3 9 9 Si 1.86806 * 119.99951 * 174.19241 * 7 5 3 10 10 H 1.48499 * 109.46667 * 269.99840 * 9 7 5 11 11 H 1.48497 * 109.47071 * 29.99905 * 9 7 5 12 12 H 1.48494 * 109.47021 * 150.00140 * 9 7 5 13 13 N 1.46904 * 109.46785 * 63.89975 * 3 2 1 14 14 C 1.46904 * 111.00176 * 80.80979 * 13 3 2 15 15 C 1.50696 * 109.46968 * 184.82712 * 14 13 3 16 16 C 1.38264 * 119.94024 * 269.72249 * 15 14 13 17 17 C 1.38149 * 120.05734 * 179.72933 * 16 15 14 18 18 C 1.38737 * 119.93769 * 0.56578 * 17 16 15 19 19 O 1.35901 * 120.05438 * 179.67926 * 18 17 16 20 20 C 1.42898 * 117.00018 * 0.03020 * 19 18 17 21 21 C 1.50702 * 109.47497 * 179.97438 * 20 19 18 22 22 N 1.34779 * 120.00297 * 179.97438 * 21 20 19 23 23 O 1.21281 * 119.99523 * 359.97438 * 21 20 19 24 24 C 1.38732 * 119.89089 * 359.71182 * 18 17 16 25 25 C 1.38143 * 119.94392 * 359.97438 * 24 18 17 26 26 H 1.09002 * 109.47241 * 64.86555 * 1 2 3 27 27 H 1.08999 * 109.47223 * 184.86939 * 1 2 3 28 28 H 1.09001 * 109.46894 * 304.86579 * 1 2 3 29 29 H 1.08999 * 109.47200 * 240.00030 * 2 1 3 30 30 H 1.09008 * 109.47139 * 120.00535 * 2 1 3 31 31 H 0.96997 * 120.00459 * 354.16805 * 8 7 5 32 32 H 1.00897 * 111.00397 * 316.84867 * 13 3 2 33 33 H 1.09005 * 109.46830 * 304.82036 * 14 13 3 34 34 H 1.08995 * 109.47071 * 64.82160 * 14 13 3 35 35 H 1.08000 * 119.97588 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.03393 * 180.24791 * 17 16 15 37 37 H 1.09003 * 109.47068 * 299.99559 * 20 19 18 38 38 H 1.08996 * 109.47412 * 59.99175 * 20 19 18 39 39 H 0.96993 * 119.99974 * 0.02562 * 22 21 20 40 40 H 0.96997 * 119.99751 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.02681 * 179.97438 * 24 18 17 42 42 H 1.07994 * 119.97236 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1278 1.4432 -0.0698 5 6 1.4604 2.1802 -1.1793 6 1 0.7875 3.0098 -1.0195 7 6 1.7892 1.7963 -2.4620 8 7 2.6949 0.8629 -2.6572 9 14 0.9483 2.6019 -3.9226 10 1 -0.2752 1.8368 -4.2732 11 1 0.5767 3.9964 -3.5726 12 1 1.8748 2.6129 -5.0830 13 7 1.6288 2.1072 1.2438 14 6 2.5285 1.7561 2.3508 15 6 2.0091 2.3587 3.6306 16 6 2.4167 3.6234 4.0130 17 6 1.9377 4.1804 5.1830 18 6 1.0562 3.4649 5.9804 19 8 0.5887 4.0080 7.1351 20 6 1.0462 5.3206 7.4665 21 6 0.4262 5.7546 8.7697 22 7 0.7155 6.9668 9.2829 23 8 -0.3331 5.0131 9.3566 24 6 0.6533 2.1938 5.5973 25 6 1.1301 1.6439 4.4232 26 1 -0.3634 0.4365 -0.9304 27 1 -0.3633 -1.0239 0.0872 28 1 -0.3633 0.5875 0.8432 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 3.1921 0.5046 -1.9054 32 1 0.6711 1.8864 1.4723 33 1 2.5739 0.6717 2.4520 34 1 3.5261 2.1439 2.1451 35 1 3.1069 4.1779 3.3946 36 1 2.2532 5.1699 5.4793 37 1 2.1317 5.3129 7.5650 38 1 0.7579 6.0158 6.6780 39 1 1.3224 7.5600 8.8134 40 1 0.3161 7.2463 10.1215 41 1 -0.0324 1.6348 6.2166 42 1 0.8165 0.6547 4.1244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:19 Heat of formation + Delta-G solvation = -57.009599 kcal Electronic energy + Delta-G solvation = -22513.190884 eV Core-core repulsion = 19072.136891 eV Total energy + Delta-G solvation = -3441.053993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.56429 -39.46096 -37.81413 -36.44233 -34.20449 -33.03497 -31.25678 -30.97751 -29.68961 -28.47282 -26.00599 -23.91610 -23.51174 -22.99545 -21.39312 -20.73831 -19.49485 -18.56345 -18.04502 -16.91738 -16.72205 -16.65326 -15.81287 -15.46733 -14.78848 -14.57099 -14.28064 -14.14282 -13.77173 -13.55609 -13.52862 -13.21447 -12.87235 -12.71624 -12.36914 -12.06267 -11.82547 -11.20225 -11.09264 -10.95932 -10.85563 -10.76096 -10.36880 -10.22956 -10.22393 -10.08624 -10.04658 -9.83534 -8.95658 -8.58994 -8.28383 -8.10716 -7.29837 -6.28173 -3.97915 1.38031 1.47225 2.10988 2.37599 3.46321 3.49566 3.50024 3.65464 3.79821 4.29129 4.55218 4.55918 4.62885 4.84070 4.88441 5.07250 5.33981 5.40633 5.45173 5.50432 5.63696 5.86370 6.10068 6.11344 6.12581 6.17656 6.23620 6.29758 6.34316 6.40652 6.67308 6.69808 6.80992 6.81541 6.99488 7.06676 7.27473 7.28891 7.30091 7.73850 7.92332 8.27417 8.46823 8.66136 8.94164 9.69926 11.07465 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.002660 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.476353 B =10524.450831 C =10920.541661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.026 0.974 5 C -0.569 4.569 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.671 5.671 14 C 0.095 3.905 15 C -0.101 4.101 16 C -0.059 4.059 17 C -0.210 4.210 18 C 0.115 3.885 19 O -0.294 6.294 20 C 0.040 3.960 21 C 0.520 3.480 22 N -0.852 5.852 23 O -0.519 6.519 24 C -0.146 4.146 25 C -0.076 4.076 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.330 0.670 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.408 0.592 41 H 0.129 0.871 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 9.721 20.224 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.193 4.193 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.302 5.302 14 C -0.034 4.034 15 C -0.102 4.102 16 C -0.078 4.078 17 C -0.228 4.228 18 C 0.070 3.930 19 O -0.207 6.207 20 C -0.039 4.039 21 C 0.303 3.697 22 N -0.418 5.418 23 O -0.393 6.393 24 C -0.165 4.165 25 C -0.095 4.095 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.232 0.768 40 H 0.240 0.760 41 H 0.147 0.853 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.830 9.550 18.783 21.088 hybrid contribution 0.188 -0.231 1.878 1.901 sum -0.642 9.320 20.661 22.675 Atomic orbital electron populations 1.21543 0.96799 0.98247 1.01942 1.22224 0.96123 1.01409 0.99523 1.19341 0.95413 0.88444 0.87333 0.95643 1.21856 1.30312 1.17612 0.90979 0.92681 1.25690 0.96706 0.95986 1.00145 1.70761 1.22518 1.26809 1.35384 0.83577 0.75786 0.75516 0.75555 1.21603 1.21505 1.21290 1.60914 1.04968 1.62248 1.02101 1.20888 0.97658 0.96603 0.88238 1.19981 0.98416 0.95020 0.96771 1.20860 0.98099 0.94351 0.94467 1.21164 1.02740 1.00952 0.97992 1.18953 0.94934 0.93470 0.85637 1.86120 1.66949 1.29502 1.38086 1.22388 0.99967 0.85753 0.95791 1.20131 0.81401 0.81803 0.86336 1.43658 1.51834 1.18020 1.28338 1.90813 1.34820 1.52635 1.60989 1.20343 1.03886 0.93689 0.98534 1.20913 0.95809 0.99711 0.93076 0.91394 0.95475 0.94548 0.91272 0.96118 0.92029 0.85140 0.95353 0.91085 0.85438 0.85823 0.88884 0.88773 0.76812 0.76032 0.85315 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.38 37.16 0.35 -2.30 16 2 C -0.15 -3.45 5.46 -26.73 -0.15 -3.59 16 3 C 0.20 4.90 1.95 -68.87 -0.13 4.77 16 4 H 0.03 0.68 7.31 -51.93 -0.38 0.30 16 5 C -0.57 -15.41 7.42 -34.44 -0.26 -15.67 16 6 H 0.05 1.54 7.82 -52.48 -0.41 1.13 16 7 C 0.02 0.50 5.27 -17.82 -0.09 0.40 16 8 N -0.92 -26.81 12.88 55.43 0.71 -26.10 16 9 Si 1.07 24.98 29.91 -169.99 -5.08 19.90 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -13.97 6.24 -109.22 -0.68 -14.65 16 14 C 0.10 1.66 5.63 -4.98 -0.03 1.63 16 15 C -0.10 -1.53 5.34 -104.60 -0.56 -2.09 16 16 C -0.06 -0.81 9.69 -39.60 -0.38 -1.19 16 17 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 18 C 0.11 1.50 6.69 -39.21 -0.26 1.24 16 19 O -0.29 -3.75 9.67 -39.34 -0.38 -4.13 16 20 C 0.04 0.32 5.22 36.01 0.19 0.51 16 21 C 0.52 4.68 8.18 -10.98 -0.09 4.59 16 22 N -0.85 -3.46 8.87 31.22 0.28 -3.19 16 23 O -0.52 -7.45 17.34 -14.35 -0.25 -7.70 16 24 C -0.15 -1.96 9.99 -39.43 -0.39 -2.36 16 25 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 26 H 0.07 1.55 7.30 -51.93 -0.38 1.17 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.69 6.24 -51.93 -0.32 0.37 16 29 H 0.07 1.73 6.27 -51.93 -0.33 1.41 16 30 H 0.02 0.42 7.04 -51.92 -0.37 0.05 16 31 H 0.27 7.80 6.04 -40.82 -0.25 7.55 16 32 H 0.33 6.69 6.43 -39.29 -0.25 6.44 16 33 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 34 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.06 6.30 -52.49 -0.33 0.73 16 37 H 0.09 0.51 7.66 -51.93 -0.40 0.12 16 38 H 0.09 0.56 7.66 -51.93 -0.40 0.16 16 39 H 0.40 0.28 8.83 -40.82 -0.36 -0.08 16 40 H 0.41 1.33 8.93 -40.82 -0.36 0.97 16 41 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -34.16 346.36 -8.54 -42.70 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.80 Total: 6.31 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.55 Total: -18.36 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.31 Total: -43.94 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.63 Total: -11.83 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.16 -8.54 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.309 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds