Wall clock time and date at job start Tue Mar 31 2020 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47471 * 2 1 4 4 H 1.08995 * 109.47543 * 183.89638 * 3 2 1 5 5 C 1.50698 * 109.47216 * 303.89987 * 3 2 1 6 6 H 1.08005 * 119.99692 * 115.36077 * 5 3 2 7 7 C 1.37872 * 119.99928 * 295.35904 * 5 3 2 8 8 N 1.31512 * 119.99994 * 354.19132 * 7 5 3 9 9 Si 1.86806 * 119.99951 * 174.19241 * 7 5 3 10 10 H 1.48499 * 109.46667 * 269.99840 * 9 7 5 11 11 H 1.48497 * 109.47071 * 29.99905 * 9 7 5 12 12 H 1.48494 * 109.47021 * 150.00140 * 9 7 5 13 13 N 1.46904 * 109.46785 * 63.89975 * 3 2 1 14 14 C 1.46904 * 111.00176 * 80.80979 * 13 3 2 15 15 C 1.50696 * 109.46968 * 184.82712 * 14 13 3 16 16 C 1.38264 * 119.94024 * 269.72249 * 15 14 13 17 17 C 1.38149 * 120.05734 * 179.72933 * 16 15 14 18 18 C 1.38737 * 119.93769 * 0.56578 * 17 16 15 19 19 O 1.35901 * 120.05438 * 179.67926 * 18 17 16 20 20 C 1.42898 * 117.00018 * 0.03020 * 19 18 17 21 21 C 1.50702 * 109.47497 * 179.97438 * 20 19 18 22 22 N 1.34779 * 120.00297 * 179.97438 * 21 20 19 23 23 O 1.21281 * 119.99523 * 359.97438 * 21 20 19 24 24 C 1.38732 * 119.89089 * 359.71182 * 18 17 16 25 25 C 1.38143 * 119.94392 * 359.97438 * 24 18 17 26 26 H 1.09002 * 109.47241 * 64.86555 * 1 2 3 27 27 H 1.08999 * 109.47223 * 184.86939 * 1 2 3 28 28 H 1.09001 * 109.46894 * 304.86579 * 1 2 3 29 29 H 1.08999 * 109.47200 * 240.00030 * 2 1 3 30 30 H 1.09008 * 109.47139 * 120.00535 * 2 1 3 31 31 H 0.96997 * 120.00459 * 354.16805 * 8 7 5 32 32 H 1.00897 * 111.00397 * 316.84867 * 13 3 2 33 33 H 1.09005 * 109.46830 * 304.82036 * 14 13 3 34 34 H 1.08995 * 109.47071 * 64.82160 * 14 13 3 35 35 H 1.08000 * 119.97588 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.03393 * 180.24791 * 17 16 15 37 37 H 1.09003 * 109.47068 * 299.99559 * 20 19 18 38 38 H 1.08996 * 109.47412 * 59.99175 * 20 19 18 39 39 H 0.96993 * 119.99974 * 0.02562 * 22 21 20 40 40 H 0.96997 * 119.99751 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.02681 * 179.97438 * 24 18 17 42 42 H 1.07994 * 119.97236 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1278 1.4432 -0.0698 5 6 1.4604 2.1802 -1.1793 6 1 0.7875 3.0098 -1.0195 7 6 1.7892 1.7963 -2.4620 8 7 2.6949 0.8629 -2.6572 9 14 0.9483 2.6019 -3.9226 10 1 -0.2752 1.8368 -4.2732 11 1 0.5767 3.9964 -3.5726 12 1 1.8748 2.6129 -5.0830 13 7 1.6288 2.1072 1.2438 14 6 2.5285 1.7561 2.3508 15 6 2.0091 2.3587 3.6306 16 6 2.4167 3.6234 4.0130 17 6 1.9377 4.1804 5.1830 18 6 1.0562 3.4649 5.9804 19 8 0.5887 4.0080 7.1351 20 6 1.0462 5.3206 7.4665 21 6 0.4262 5.7546 8.7697 22 7 0.7155 6.9668 9.2829 23 8 -0.3331 5.0131 9.3566 24 6 0.6533 2.1938 5.5973 25 6 1.1301 1.6439 4.4232 26 1 -0.3634 0.4365 -0.9304 27 1 -0.3633 -1.0239 0.0872 28 1 -0.3633 0.5875 0.8432 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 3.1921 0.5046 -1.9054 32 1 0.6711 1.8864 1.4723 33 1 2.5739 0.6717 2.4520 34 1 3.5261 2.1439 2.1451 35 1 3.1069 4.1779 3.3946 36 1 2.2532 5.1699 5.4793 37 1 2.1317 5.3129 7.5650 38 1 0.7579 6.0158 6.6780 39 1 1.3224 7.5600 8.8134 40 1 0.3161 7.2463 10.1215 41 1 -0.0324 1.6348 6.2166 42 1 0.8165 0.6547 4.1244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:17 Heat of formation + Delta-G solvation = -81.815019 kcal Electronic energy + Delta-G solvation = -22514.266528 eV Core-core repulsion = 19072.136891 eV Total energy + Delta-G solvation = -3442.129637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42476 -40.30921 -39.03634 -37.95352 -34.81384 -34.75044 -32.88526 -32.04746 -30.94224 -29.36676 -27.74751 -25.62914 -25.17776 -23.94441 -22.35950 -21.62989 -21.32000 -19.41073 -18.82701 -18.61989 -17.47645 -17.36130 -16.95010 -16.66537 -16.19708 -15.72975 -15.47468 -15.37414 -15.24744 -14.98669 -14.89298 -14.42648 -14.15341 -13.98644 -13.77218 -13.39275 -13.18854 -13.05341 -12.61890 -12.41452 -12.03176 -11.95448 -11.93534 -11.87738 -11.80196 -11.62595 -11.12939 -10.76537 -10.59271 -10.38802 -9.95674 -9.21666 -8.93732 -8.47216 -6.17983 0.37776 0.42091 1.46186 1.56923 1.64397 1.70607 1.81907 2.61391 2.75522 2.85076 3.27798 3.70487 3.74447 3.91920 3.93421 4.00846 4.10255 4.11898 4.29665 4.34851 4.38856 4.43410 4.52659 4.57887 4.74957 4.76347 4.96112 5.09538 5.13657 5.23207 5.26752 5.35412 5.44360 5.53501 5.71384 5.73092 5.83159 5.99994 6.23341 6.28063 6.44862 6.57023 6.77043 6.81984 7.23997 7.57258 8.87910 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.002660 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.476353 B =10524.450831 C =10920.541661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.145 4.145 3 C 0.207 3.793 4 H -0.005 1.005 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.028 4.028 8 N -0.941 5.941 9 Si 1.109 2.891 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.289 1.289 13 N -0.675 5.675 14 C 0.102 3.898 15 C -0.121 4.121 16 C -0.067 4.067 17 C -0.200 4.200 18 C 0.117 3.883 19 O -0.318 6.318 20 C 0.031 3.969 21 C 0.518 3.482 22 N -0.825 5.825 23 O -0.584 6.584 24 C -0.159 4.159 25 C -0.078 4.078 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.257 0.743 32 H 0.333 0.667 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.162 0.838 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.423 0.577 40 H 0.414 0.586 41 H 0.135 0.865 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 11.515 21.384 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.185 4.185 3 C 0.098 3.902 4 H 0.013 0.987 5 C -0.612 4.612 6 H 0.062 0.938 7 C -0.226 4.226 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.215 1.215 13 N -0.307 5.307 14 C -0.027 4.027 15 C -0.122 4.122 16 C -0.085 4.085 17 C -0.218 4.218 18 C 0.072 3.928 19 O -0.231 6.231 20 C -0.047 4.047 21 C 0.302 3.698 22 N -0.392 5.392 23 O -0.463 6.463 24 C -0.177 4.177 25 C -0.097 4.097 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.180 0.820 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.255 0.745 40 H 0.247 0.753 41 H 0.153 0.847 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.183 11.408 19.971 23.031 hybrid contribution 0.350 -0.673 1.674 1.837 sum -0.834 10.735 21.645 24.175 Atomic orbital electron populations 1.21456 0.95132 0.99913 1.01294 1.22080 0.97515 0.99996 0.98931 1.19116 0.93373 0.89471 0.88280 0.98691 1.22097 1.29610 1.17238 0.92222 0.93799 1.26931 0.96688 0.95923 1.03051 1.70867 1.23821 1.28309 1.34949 0.83018 0.75324 0.75581 0.72803 1.20224 1.20010 1.21453 1.60779 1.05689 1.62086 1.02103 1.20804 0.96708 0.96794 0.88365 1.19804 1.00063 0.96147 0.96146 1.21008 0.98276 0.93905 0.95333 1.21446 1.01496 1.02236 0.96651 1.19070 0.94588 0.93364 0.85824 1.86099 1.67450 1.31816 1.37735 1.22780 1.01720 0.84252 0.95977 1.20417 0.80608 0.82361 0.86418 1.43471 1.50900 1.16598 1.28195 1.90792 1.37935 1.54775 1.62809 1.20506 1.04245 0.94458 0.98521 1.20948 0.95583 0.99986 0.93179 0.93826 0.93050 0.92922 0.94212 0.94239 0.93206 0.84737 0.95356 0.91819 0.84999 0.82045 0.85715 0.86047 0.74463 0.75301 0.84719 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.38 71.98 0.68 -4.21 16 2 C -0.15 -6.58 5.46 30.59 0.17 -6.42 16 3 C 0.21 10.15 1.95 44.17 0.09 10.24 16 4 H 0.00 -0.26 7.31 -2.39 -0.02 -0.28 16 5 C -0.57 -31.41 7.42 25.60 0.19 -31.22 16 6 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 7 C -0.03 -1.58 5.27 84.65 0.45 -1.13 16 8 N -0.94 -56.16 12.88 21.45 0.28 -55.88 16 9 Si 1.11 50.25 29.91 68.60 2.05 52.30 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.68 -28.06 6.24 -499.47 -3.12 -31.17 16 14 C 0.10 3.55 5.63 85.56 0.48 4.03 16 15 C -0.12 -3.54 5.34 -19.85 -0.11 -3.65 16 16 C -0.07 -1.70 9.69 22.25 0.22 -1.49 16 17 C -0.20 -4.13 9.04 22.37 0.20 -3.93 16 18 C 0.12 2.79 6.69 22.51 0.15 2.94 16 19 O -0.32 -7.47 9.67 -73.39 -0.71 -8.18 16 20 C 0.03 0.39 5.22 71.24 0.37 0.77 16 21 C 0.52 8.29 8.18 87.66 0.72 9.01 16 22 N -0.82 -4.40 8.87 -173.53 -1.54 -5.94 16 23 O -0.58 -16.59 17.34 16.00 0.28 -16.31 16 24 C -0.16 -4.07 9.99 22.37 0.22 -3.85 16 25 C -0.08 -2.11 9.69 22.25 0.22 -1.89 16 26 H 0.04 1.96 7.30 -2.39 -0.02 1.94 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.93 6.24 -2.39 -0.01 1.92 16 29 H 0.04 2.03 6.27 -2.39 -0.01 2.01 16 30 H 0.04 1.61 7.04 -2.38 -0.02 1.59 16 31 H 0.26 15.52 6.04 -92.71 -0.56 14.96 16 32 H 0.33 13.31 6.43 -89.70 -0.58 12.73 16 33 H 0.03 0.98 6.94 -2.38 -0.02 0.96 16 34 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 35 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 37 H 0.13 0.82 7.66 -2.39 -0.02 0.80 16 38 H 0.12 0.92 7.66 -2.39 -0.02 0.90 16 39 H 0.42 -1.01 8.83 -92.71 -0.82 -1.83 16 40 H 0.41 1.75 8.93 -92.71 -0.83 0.92 16 41 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 42 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -76.19 346.36 0.33 -75.86 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.95 Total: 20.11 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.04 Total: -30.80 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -4.38 Total: -92.99 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.43 Total: -24.49 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -76.19 0.33 -75.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.952 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds