Wall clock time and date at job start Tue Mar 31 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.08994 * 109.47705 * 305.76508 * 3 2 1 5 5 C 1.50704 * 109.47115 * 185.76591 * 3 2 1 6 6 H 1.08004 * 119.99849 * 274.49066 * 5 3 2 7 7 C 1.37874 * 119.99860 * 94.75800 * 5 3 2 8 8 N 1.31520 * 119.99772 * 185.58286 * 7 5 3 9 9 Si 1.86802 * 119.99962 * 5.58794 * 7 5 3 10 10 H 1.48503 * 109.46797 * 86.66474 * 9 7 5 11 11 H 1.48500 * 109.46952 * 206.66021 * 9 7 5 12 12 H 1.48494 * 109.47086 * 326.66319 * 9 7 5 13 13 N 1.46898 * 109.47388 * 65.76917 * 3 2 1 14 14 C 1.46895 * 110.99906 * 248.69692 * 13 3 2 15 15 C 1.50700 * 109.47419 * 183.82958 * 14 13 3 16 16 C 1.38264 * 119.94464 * 269.72632 * 15 14 13 17 17 C 1.38151 * 120.05117 * 179.72169 * 16 15 14 18 18 C 1.38729 * 119.94844 * 0.56934 * 17 16 15 19 19 O 1.35896 * 120.05809 * 179.68351 * 18 17 16 20 20 C 1.42901 * 116.99727 * 0.02562 * 19 18 17 21 21 C 1.50707 * 109.46939 * 179.97438 * 20 19 18 22 22 N 1.34770 * 120.00004 * 179.97438 * 21 20 19 23 23 O 1.21280 * 119.99654 * 0.02562 * 21 20 19 24 24 C 1.38729 * 119.88606 * 359.70455 * 18 17 16 25 25 C 1.38148 * 119.94537 * 359.97438 * 24 18 17 26 26 H 1.08998 * 109.47015 * 55.27881 * 1 2 3 27 27 H 1.08997 * 109.47004 * 175.27623 * 1 2 3 28 28 H 1.08997 * 109.46982 * 295.27822 * 1 2 3 29 29 H 1.08998 * 109.47205 * 240.00038 * 2 1 3 30 30 H 1.09001 * 109.47131 * 119.99856 * 2 1 3 31 31 H 0.97001 * 119.99537 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99694 * 12.64065 * 13 3 2 33 33 H 1.09001 * 109.47315 * 303.82912 * 14 13 3 34 34 H 1.09003 * 109.47812 * 63.82842 * 14 13 3 35 35 H 1.07996 * 119.97284 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.02081 * 180.25343 * 17 16 15 37 37 H 1.08995 * 109.47232 * 299.99635 * 20 19 18 38 38 H 1.09002 * 109.47123 * 60.00519 * 20 19 18 39 39 H 0.97005 * 120.00337 * 0.02562 * 22 21 20 40 40 H 0.97000 * 119.99902 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.02792 * 179.97438 * 24 18 17 42 42 H 1.08002 * 119.96975 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9853 -0.8338 5 6 3.5403 1.4449 -0.1427 6 1 4.1661 1.3414 0.7314 7 6 4.1140 1.5849 -1.3886 8 7 5.4173 1.4773 -1.5283 9 14 3.0401 1.9275 -2.8782 10 1 2.8262 3.3913 -3.0081 11 1 3.7105 1.4149 -4.1001 12 1 1.7300 1.2487 -2.7106 13 7 1.6673 2.0937 1.2629 14 6 0.6561 3.1355 1.0397 15 6 0.3685 3.8431 2.3387 16 6 -0.6347 3.3795 3.1697 17 6 -0.8964 4.0231 4.3638 18 6 -0.1598 5.1422 4.7234 19 8 -0.4197 5.7808 5.8945 20 6 -1.4655 5.2447 6.7075 21 6 -1.6079 6.0768 7.9559 22 7 -2.5389 5.7569 8.8764 23 8 -0.8853 7.0348 8.1318 24 6 0.8424 5.6087 3.8852 25 6 1.1048 4.9578 2.6953 26 1 -0.3633 0.5853 -0.8447 27 1 -0.3633 -1.0242 -0.0846 28 1 -0.3633 0.4388 0.9292 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8208 1.5754 -2.4049 32 1 1.3454 1.4161 1.9378 33 1 1.0295 3.8537 0.3097 34 1 -0.2596 2.6787 0.6643 35 1 -1.2113 2.5113 2.8870 36 1 -1.6774 3.6581 5.0145 37 1 -2.4026 5.2605 6.1511 38 1 -1.2227 4.2180 6.9814 39 1 -3.1172 4.9909 8.7355 40 1 -2.6308 6.2927 9.6797 41 1 1.4170 6.4800 4.1627 42 1 1.8846 5.3208 2.0422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:23 Heat of formation + Delta-G solvation = -53.336809 kcal Electronic energy + Delta-G solvation = -22515.504285 eV Core-core repulsion = 19074.609556 eV Total energy + Delta-G solvation = -3440.894729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.53093 -39.42815 -37.76317 -36.32508 -34.19240 -32.65150 -31.81521 -31.01899 -29.81480 -28.58720 -27.09614 -24.23090 -22.95337 -22.51511 -21.26932 -20.71169 -19.73803 -18.52679 -18.04108 -16.93835 -16.71876 -16.63155 -15.86263 -15.33728 -14.91433 -14.54642 -14.47277 -14.23744 -14.03895 -13.92073 -13.31794 -13.06291 -12.76639 -12.68188 -12.45090 -12.03439 -11.95575 -11.70096 -11.28938 -11.04392 -10.91003 -10.81572 -10.53511 -10.40717 -10.34414 -10.21533 -9.85590 -9.72313 -9.23771 -8.88885 -8.48530 -8.05533 -7.26815 -6.01905 -3.97774 1.45409 1.50899 2.12697 2.40280 3.28082 3.35979 3.37243 3.52592 3.85309 4.30392 4.43624 4.55861 4.63976 4.85355 4.89906 5.06670 5.22085 5.40702 5.47830 5.55726 5.69807 5.74089 5.82248 5.90034 5.97146 6.08544 6.21404 6.25099 6.32609 6.42180 6.45350 6.49864 6.70994 6.73873 6.84037 6.86436 6.91450 7.14405 7.33594 7.75441 7.78068 7.94962 8.38107 8.74035 9.11251 9.61647 11.11918 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029383 B = 0.002822 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.716994 B = 9918.678100 C =10387.226709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.141 4.141 3 C 0.184 3.816 4 H 0.028 0.972 5 C -0.486 4.486 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.667 5.667 14 C 0.097 3.903 15 C -0.098 4.098 16 C -0.079 4.079 17 C -0.211 4.211 18 C 0.114 3.886 19 O -0.293 6.293 20 C 0.041 3.959 21 C 0.519 3.481 22 N -0.852 5.852 23 O -0.517 6.517 24 C -0.145 4.145 25 C -0.056 4.056 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.262 0.738 32 H 0.322 0.678 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.403 0.597 40 H 0.408 0.592 41 H 0.130 0.870 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.951 4.220 15.291 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.077 3.923 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.698 3.302 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.298 5.298 14 C -0.032 4.032 15 C -0.099 4.099 16 C -0.097 4.097 17 C -0.230 4.230 18 C 0.069 3.931 19 O -0.206 6.206 20 C -0.038 4.038 21 C 0.303 3.697 22 N -0.419 5.419 23 O -0.391 6.391 24 C -0.164 4.164 25 C -0.074 4.074 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.231 0.769 40 H 0.240 0.760 41 H 0.148 0.852 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.587 5.432 15.123 24.570 hybrid contribution -1.833 -0.807 -0.756 2.140 sum -20.419 4.625 14.367 25.392 Atomic orbital electron populations 1.21943 0.98618 1.00277 1.00427 1.22339 0.92437 1.01308 1.01936 1.19750 0.96757 0.88768 0.87070 0.95418 1.20969 0.89045 1.48015 0.94419 0.90419 1.25012 0.94729 0.95186 0.98445 1.69902 1.09763 1.50585 1.23707 0.86976 0.81143 0.78996 0.83094 1.20301 1.21553 1.19183 1.60936 1.39957 1.15918 1.12966 1.20957 0.94043 0.95340 0.92862 1.19959 0.95957 0.96319 0.97641 1.20809 0.97055 0.98699 0.93186 1.21065 1.03560 0.98474 0.99905 1.18957 0.96028 0.92475 0.85591 1.86133 1.51928 1.52767 1.29797 1.22373 0.92668 0.97797 0.90998 1.20141 0.80190 0.84973 0.84431 1.43661 1.38806 1.35193 1.24244 1.90818 1.42906 1.28011 1.77382 1.20442 0.98715 1.02641 0.94602 1.20975 0.97492 0.93956 0.94985 0.93667 0.93839 0.93795 0.92095 0.92400 0.92769 0.86036 0.90655 0.95640 0.86167 0.86038 0.88982 0.88875 0.76868 0.76045 0.85221 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.21 37.16 0.34 -2.16 16 2 C -0.14 -2.82 5.19 -26.73 -0.14 -2.96 16 3 C 0.18 4.16 1.83 -68.86 -0.13 4.04 16 4 H 0.03 0.65 4.62 -51.93 -0.24 0.41 16 5 C -0.49 -13.48 9.19 -34.44 -0.32 -13.80 16 6 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.87 21.24 27.06 -169.99 -4.60 16.64 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.16 6.72 56.52 0.38 -5.78 16 13 N -0.67 -13.23 6.07 -109.23 -0.66 -13.89 16 14 C 0.10 1.64 5.38 -4.98 -0.03 1.62 16 15 C -0.10 -1.47 5.43 -104.60 -0.57 -2.04 16 16 C -0.08 -1.00 9.69 -39.60 -0.38 -1.39 16 17 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 18 C 0.11 1.50 6.69 -39.22 -0.26 1.24 16 19 O -0.29 -3.79 9.67 -39.32 -0.38 -4.17 16 20 C 0.04 0.33 5.22 36.01 0.19 0.52 16 21 C 0.52 4.69 8.18 -10.98 -0.09 4.60 16 22 N -0.85 -3.42 8.87 31.22 0.28 -3.14 16 23 O -0.52 -7.51 17.34 -14.35 -0.25 -7.76 16 24 C -0.15 -2.05 9.99 -39.43 -0.39 -2.44 16 25 C -0.06 -0.83 9.69 -39.60 -0.38 -1.21 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.64 7.00 -51.93 -0.36 0.27 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.32 5.88 7.57 -39.29 -0.30 5.58 16 33 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 34 H 0.03 0.40 7.18 -51.93 -0.37 0.03 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 0.98 6.30 -52.48 -0.33 0.65 16 37 H 0.09 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.09 0.54 7.66 -51.93 -0.40 0.14 16 39 H 0.40 0.22 8.83 -40.82 -0.36 -0.14 16 40 H 0.41 1.33 8.93 -40.82 -0.36 0.96 16 41 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -35.26 350.90 -8.24 -43.50 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.08 Total: 5.22 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.61 Total: -14.93 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.39 Total: -43.79 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.63 Total: -11.93 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.60 Total: 16.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.26 -8.24 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.832 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds