Wall clock time and date at job start Tue Mar 31 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.08994 * 109.47705 * 305.76508 * 3 2 1 5 5 C 1.50704 * 109.47115 * 185.76591 * 3 2 1 6 6 H 1.08004 * 119.99849 * 274.49066 * 5 3 2 7 7 C 1.37874 * 119.99860 * 94.75800 * 5 3 2 8 8 N 1.31520 * 119.99772 * 185.58286 * 7 5 3 9 9 Si 1.86802 * 119.99962 * 5.58794 * 7 5 3 10 10 H 1.48503 * 109.46797 * 86.66474 * 9 7 5 11 11 H 1.48500 * 109.46952 * 206.66021 * 9 7 5 12 12 H 1.48494 * 109.47086 * 326.66319 * 9 7 5 13 13 N 1.46898 * 109.47388 * 65.76917 * 3 2 1 14 14 C 1.46895 * 110.99906 * 248.69692 * 13 3 2 15 15 C 1.50700 * 109.47419 * 183.82958 * 14 13 3 16 16 C 1.38264 * 119.94464 * 269.72632 * 15 14 13 17 17 C 1.38151 * 120.05117 * 179.72169 * 16 15 14 18 18 C 1.38729 * 119.94844 * 0.56934 * 17 16 15 19 19 O 1.35896 * 120.05809 * 179.68351 * 18 17 16 20 20 C 1.42901 * 116.99727 * 0.02562 * 19 18 17 21 21 C 1.50707 * 109.46939 * 179.97438 * 20 19 18 22 22 N 1.34770 * 120.00004 * 179.97438 * 21 20 19 23 23 O 1.21280 * 119.99654 * 0.02562 * 21 20 19 24 24 C 1.38729 * 119.88606 * 359.70455 * 18 17 16 25 25 C 1.38148 * 119.94537 * 359.97438 * 24 18 17 26 26 H 1.08998 * 109.47015 * 55.27881 * 1 2 3 27 27 H 1.08997 * 109.47004 * 175.27623 * 1 2 3 28 28 H 1.08997 * 109.46982 * 295.27822 * 1 2 3 29 29 H 1.08998 * 109.47205 * 240.00038 * 2 1 3 30 30 H 1.09001 * 109.47131 * 119.99856 * 2 1 3 31 31 H 0.97001 * 119.99537 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99694 * 12.64065 * 13 3 2 33 33 H 1.09001 * 109.47315 * 303.82912 * 14 13 3 34 34 H 1.09003 * 109.47812 * 63.82842 * 14 13 3 35 35 H 1.07996 * 119.97284 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.02081 * 180.25343 * 17 16 15 37 37 H 1.08995 * 109.47232 * 299.99635 * 20 19 18 38 38 H 1.09002 * 109.47123 * 60.00519 * 20 19 18 39 39 H 0.97005 * 120.00337 * 0.02562 * 22 21 20 40 40 H 0.97000 * 119.99902 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.02792 * 179.97438 * 24 18 17 42 42 H 1.08002 * 119.96975 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9853 -0.8338 5 6 3.5403 1.4449 -0.1427 6 1 4.1661 1.3414 0.7314 7 6 4.1140 1.5849 -1.3886 8 7 5.4173 1.4773 -1.5283 9 14 3.0401 1.9275 -2.8782 10 1 2.8262 3.3913 -3.0081 11 1 3.7105 1.4149 -4.1001 12 1 1.7300 1.2487 -2.7106 13 7 1.6673 2.0937 1.2629 14 6 0.6561 3.1355 1.0397 15 6 0.3685 3.8431 2.3387 16 6 -0.6347 3.3795 3.1697 17 6 -0.8964 4.0231 4.3638 18 6 -0.1598 5.1422 4.7234 19 8 -0.4197 5.7808 5.8945 20 6 -1.4655 5.2447 6.7075 21 6 -1.6079 6.0768 7.9559 22 7 -2.5389 5.7569 8.8764 23 8 -0.8853 7.0348 8.1318 24 6 0.8424 5.6087 3.8852 25 6 1.1048 4.9578 2.6953 26 1 -0.3633 0.5853 -0.8447 27 1 -0.3633 -1.0242 -0.0846 28 1 -0.3633 0.4388 0.9292 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8208 1.5754 -2.4049 32 1 1.3454 1.4161 1.9378 33 1 1.0295 3.8537 0.3097 34 1 -0.2596 2.6787 0.6643 35 1 -1.2113 2.5113 2.8870 36 1 -1.6774 3.6581 5.0145 37 1 -2.4026 5.2605 6.1511 38 1 -1.2227 4.2180 6.9814 39 1 -3.1172 4.9909 8.7355 40 1 -2.6308 6.2927 9.6797 41 1 1.4170 6.4800 4.1627 42 1 1.8846 5.3208 2.0422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:23 Heat of formation + Delta-G solvation = -80.706868 kcal Electronic energy + Delta-G solvation = -22516.691140 eV Core-core repulsion = 19074.609556 eV Total energy + Delta-G solvation = -3442.081584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38258 -40.26871 -38.90464 -37.74420 -34.79190 -34.49590 -33.39611 -31.99959 -30.98017 -29.57167 -28.66661 -25.65715 -24.10404 -23.87141 -22.21550 -21.66122 -21.37117 -19.37170 -19.00786 -18.61348 -17.41100 -17.33024 -16.89949 -16.69862 -16.39012 -15.90420 -15.66113 -15.35651 -15.19261 -14.85109 -14.71102 -14.33920 -14.28578 -13.78497 -13.63860 -13.50400 -13.25803 -13.12358 -12.80418 -12.58108 -12.06748 -12.03856 -11.93876 -11.78769 -11.65267 -11.50673 -11.19777 -11.10663 -10.75053 -10.62597 -9.89372 -9.10702 -8.81360 -8.22269 -6.22553 0.45463 0.46919 1.34705 1.35495 1.45630 1.48330 1.74218 2.37185 2.79717 2.87939 3.10767 3.76267 3.80424 3.96751 3.97275 4.10465 4.14607 4.15193 4.31051 4.39559 4.43138 4.50747 4.54143 4.63036 4.75912 4.82690 4.88250 5.13171 5.15978 5.21364 5.28939 5.32122 5.41090 5.53923 5.77319 5.77369 5.81381 5.86934 6.12101 6.31578 6.49477 6.73479 6.81592 6.94706 7.26291 7.41265 8.95777 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029383 B = 0.002822 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.716994 B = 9918.678100 C =10387.226709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.190 3.810 4 H 0.027 0.973 5 C -0.489 4.489 6 H 0.027 0.973 7 C 0.004 3.996 8 N -0.955 5.955 9 Si 0.939 3.061 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.240 1.240 13 N -0.683 5.683 14 C 0.103 3.897 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.199 4.199 18 C 0.115 3.885 19 O -0.321 6.321 20 C 0.031 3.969 21 C 0.516 3.484 22 N -0.825 5.825 23 O -0.586 6.586 24 C -0.165 4.165 25 C -0.072 4.072 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.334 0.666 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.148 0.852 36 H 0.166 0.834 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.424 0.576 40 H 0.414 0.586 41 H 0.125 0.875 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.617 2.983 16.079 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.081 3.919 4 H 0.045 0.955 5 C -0.528 4.528 6 H 0.045 0.955 7 C -0.192 4.192 8 N -0.597 5.597 9 Si 0.763 3.237 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.163 1.163 13 N -0.315 5.315 14 C -0.026 4.026 15 C -0.118 4.118 16 C -0.091 4.091 17 C -0.217 4.217 18 C 0.070 3.930 19 O -0.235 6.235 20 C -0.046 4.046 21 C 0.300 3.700 22 N -0.391 5.391 23 O -0.465 6.465 24 C -0.184 4.184 25 C -0.091 4.091 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.256 0.744 40 H 0.246 0.754 41 H 0.143 0.857 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.341 4.151 15.961 28.580 hybrid contribution -0.406 -0.417 -0.761 0.958 sum -23.747 3.734 15.200 28.441 Atomic orbital electron populations 1.21837 0.94744 1.02102 1.01593 1.22171 0.95825 0.98717 1.01049 1.19540 0.93171 0.90814 0.88380 0.95499 1.21305 0.91932 1.46914 0.92685 0.95505 1.25902 0.96006 0.95259 1.02043 1.70079 1.12097 1.52967 1.24535 0.85870 0.80200 0.79120 0.78526 1.19795 1.21569 1.16299 1.60604 1.42307 1.16596 1.11955 1.20878 0.93797 0.94079 0.93804 1.19852 0.97623 0.96648 0.97663 1.21086 0.95997 0.99125 0.92861 1.21457 1.03543 0.96959 0.99741 1.19042 0.95616 0.92827 0.85527 1.86104 1.53729 1.53727 1.29929 1.22787 0.92919 0.98651 0.90273 1.20478 0.80031 0.84189 0.85264 1.43467 1.37232 1.35298 1.23144 1.90798 1.45814 1.30996 1.78895 1.20488 0.99900 1.03005 0.94988 1.20918 0.97848 0.94894 0.95461 0.93529 0.91547 0.91762 0.93896 0.92619 0.92854 0.84750 0.92680 0.93297 0.83445 0.81624 0.85516 0.85857 0.74413 0.75364 0.85671 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.21 71.98 0.66 -3.41 16 2 C -0.14 -5.29 5.19 30.60 0.16 -5.13 16 3 C 0.19 8.46 1.83 44.17 0.08 8.54 16 4 H 0.03 1.21 4.62 -2.39 -0.01 1.20 16 5 C -0.49 -28.17 9.19 25.60 0.24 -27.93 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 7 C 0.00 0.22 5.47 84.65 0.46 0.69 16 8 N -0.96 -61.01 13.96 21.45 0.30 -60.71 16 9 Si 0.94 44.26 27.06 68.60 1.86 46.12 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.24 -10.15 6.72 99.48 0.67 -9.48 16 13 N -0.68 -26.59 6.07 -499.48 -3.03 -29.62 16 14 C 0.10 3.33 5.38 85.56 0.46 3.79 16 15 C -0.12 -3.34 5.43 -19.85 -0.11 -3.44 16 16 C -0.07 -1.55 9.69 22.26 0.22 -1.34 16 17 C -0.20 -3.69 9.04 22.37 0.20 -3.49 16 18 C 0.11 2.80 6.69 22.50 0.15 2.95 16 19 O -0.32 -7.76 9.67 -73.34 -0.71 -8.47 16 20 C 0.03 0.39 5.22 71.24 0.37 0.76 16 21 C 0.52 8.27 8.18 87.66 0.72 8.99 16 22 N -0.82 -4.13 8.87 -173.53 -1.54 -5.67 16 23 O -0.59 -17.01 17.34 16.01 0.28 -16.73 16 24 C -0.17 -4.70 9.99 22.37 0.22 -4.48 16 25 C -0.07 -2.21 9.69 22.26 0.22 -1.99 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.54 7.00 -2.39 -0.02 1.52 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.33 11.58 7.57 -89.69 -0.68 10.91 16 33 H 0.05 1.98 8.02 -2.39 -0.02 1.96 16 34 H 0.05 1.36 7.18 -2.39 -0.02 1.34 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.17 1.55 6.30 -2.91 -0.02 1.53 16 37 H 0.13 0.70 7.66 -2.39 -0.02 0.68 16 38 H 0.12 0.80 7.66 -2.39 -0.02 0.78 16 39 H 0.42 -1.33 8.83 -92.70 -0.82 -2.15 16 40 H 0.41 1.70 8.93 -92.71 -0.83 0.87 16 41 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -83.01 350.90 -0.10 -83.11 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -1.30 Total: 17.47 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.05 Total: -25.50 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -4.27 Total: -96.01 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.43 Total: -25.20 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.86 Total: 46.12 kcal Total: -83.01 -0.10 -83.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.406 kcal (2) G-P(sol) polarization free energy of solvation -83.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds