Wall clock time and date at job start Tue Mar 31 2020 07:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47309 * 2 1 4 4 N 1.46906 * 109.46816 * 120.00326 * 2 1 3 5 5 C 1.46898 * 110.99964 * 56.04285 * 4 2 1 6 6 C 1.46904 * 110.99792 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.46989 * 169.99677 * 6 4 2 8 8 O 1.21298 * 119.99894 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00072 * 180.02562 * 7 6 4 10 10 C 1.39994 * 119.99961 * 175.49296 * 9 7 6 11 11 C 1.38914 * 119.99915 * 215.12569 * 10 9 7 12 12 C 1.38008 * 119.99790 * 180.02562 * 11 10 9 13 13 C 1.38901 * 119.99971 * 0.02562 * 12 11 10 14 14 O 1.35779 * 119.99801 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99993 * 5.34431 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95669 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96724 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47187 * 59.99558 * 19 17 15 21 21 H 1.48503 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46741 * 299.99567 * 19 17 15 23 23 C 1.38911 * 120.00514 * 0.25336 * 13 12 11 24 24 C 1.37999 * 119.99944 * 359.44805 * 23 13 12 25 25 H 1.09003 * 109.46906 * 300.00207 * 1 2 3 26 26 H 1.09001 * 109.46598 * 59.99696 * 1 2 3 27 27 H 1.08993 * 109.47773 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46906 * 239.99793 * 2 1 3 29 29 H 1.09002 * 109.46762 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47121 * 299.99420 * 3 2 1 31 31 H 1.08995 * 109.46979 * 60.00179 * 3 2 1 32 32 H 1.09005 * 109.46719 * 183.95667 * 5 4 2 33 33 H 1.09002 * 109.46925 * 303.95219 * 5 4 2 34 34 H 1.08995 * 109.47341 * 63.95812 * 5 4 2 35 35 H 1.09002 * 109.46829 * 50.00261 * 6 4 2 36 36 H 1.08997 * 109.47004 * 289.99934 * 6 4 2 37 37 H 0.97001 * 119.99802 * 355.49268 * 9 7 6 38 38 H 1.08000 * 120.00692 * 359.97438 * 11 10 9 39 39 H 1.08003 * 120.00069 * 179.97438 * 12 11 10 40 40 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.99949 * 179.70423 * 23 13 12 42 42 H 1.08003 * 120.00671 * 180.27723 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.4728 -2.0536 1.2816 6 6 3.4881 -0.7127 1.2331 7 6 3.9530 -1.2051 2.5794 8 8 3.1409 -1.5098 3.4273 9 7 5.2711 -1.3070 2.8414 10 6 5.7042 -1.6736 4.1212 11 6 6.8690 -1.1260 4.6436 12 6 7.2962 -1.4878 5.9051 13 6 6.5617 -2.3999 6.6520 14 8 6.9822 -2.7563 7.8928 15 6 8.0566 -2.1074 8.3847 16 1 8.5909 -1.4013 7.7664 17 6 8.4759 -2.3466 9.6843 18 7 7.8248 -3.2066 10.4378 19 14 9.9650 -1.4480 10.3657 20 1 9.7180 0.0159 10.3322 21 1 10.2038 -1.8773 11.7672 22 1 11.1569 -1.7680 9.5397 23 6 5.3999 -2.9520 6.1273 24 6 4.9694 -2.5856 4.8684 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.7947 -2.5188 2.2133 33 1 0.3840 -2.0099 1.2544 34 1 1.8341 -2.6418 0.4381 35 1 3.8693 0.2942 1.0631 36 1 3.8603 -1.3784 0.4544 37 1 5.9197 -1.1262 2.1431 38 1 7.4409 -0.4177 4.0625 39 1 8.2020 -1.0624 6.3112 40 1 8.1179 -3.3737 11.3472 41 1 4.8315 -3.6647 6.7062 42 1 4.0638 -3.0113 4.4621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063500705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:06 Heat of formation + Delta-G solvation = -19.624310 kcal Electronic energy + Delta-G solvation = -22730.736198 eV Core-core repulsion = 19291.303352 eV Total energy + Delta-G solvation = -3439.432846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.27084 -38.88781 -37.92628 -36.33158 -33.93167 -32.36816 -32.14401 -30.19261 -29.58479 -27.94916 -26.37559 -25.32272 -24.63250 -22.27104 -21.52635 -20.28695 -20.01976 -18.04239 -17.38723 -17.14150 -16.63540 -16.02821 -15.21672 -15.06289 -14.81516 -14.55173 -14.36691 -13.87483 -13.56046 -13.52069 -13.09597 -12.83770 -12.75324 -12.62226 -12.50170 -12.21524 -12.06761 -11.81395 -11.64358 -11.54849 -11.40371 -11.28353 -10.98935 -10.91555 -10.71104 -10.45721 -9.63959 -9.53272 -9.19960 -8.68494 -8.49482 -8.18139 -6.91126 -6.42604 -4.00843 2.12308 2.23151 2.86294 3.11630 3.14014 3.17480 3.18476 3.82444 3.98509 4.56454 4.58877 4.65605 4.74416 4.98814 5.01856 5.06043 5.12181 5.32761 5.35385 5.35696 5.39905 5.51865 5.53070 5.57519 5.64598 5.80684 5.85709 5.96154 6.06429 6.17907 6.25113 6.31222 6.71316 6.82735 6.87277 6.88568 7.02963 7.18667 7.24224 7.43303 7.75613 7.81357 8.01732 8.44037 9.02542 9.73286 10.75334 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040416 B = 0.002641 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.626472 B =10597.669072 C =10921.708641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.150 4.150 4 N -0.519 5.519 5 C 0.014 3.986 6 C 0.033 3.967 7 C 0.505 3.495 8 O -0.508 6.508 9 N -0.664 5.664 10 C 0.036 3.964 11 C -0.090 4.090 12 C -0.220 4.220 13 C 0.147 3.853 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.179 4.179 24 C -0.067 4.067 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.018 0.982 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.400 0.600 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.270 0.730 41 H 0.120 0.880 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 6.293 -21.798 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.207 4.207 4 N -0.244 5.244 5 C -0.134 4.134 6 C -0.098 4.098 7 C 0.291 3.709 8 O -0.382 6.382 9 N -0.309 5.309 10 C -0.056 4.056 11 C -0.111 4.111 12 C -0.240 4.240 13 C 0.093 3.907 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.199 4.199 24 C -0.087 4.087 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.498 6.090 -20.382 22.907 hybrid contribution 1.496 0.214 -0.779 1.700 sum -7.002 6.304 -21.161 23.163 Atomic orbital electron populations 1.21908 0.94005 1.02222 1.02330 1.21664 0.96054 0.95042 0.90480 1.21936 1.00924 0.95336 1.02501 1.61708 1.05478 1.18426 1.38750 1.22647 1.00733 0.87951 1.02036 1.22040 0.90197 1.02880 0.94672 1.20512 0.82233 0.78443 0.89672 1.90674 1.52868 1.47211 1.47444 1.43212 1.07030 1.68971 1.11722 1.17250 0.98742 1.02695 0.86916 1.20483 0.96178 0.98986 0.95413 1.20967 1.03374 1.04356 0.95320 1.19418 0.92251 0.92401 0.86645 1.83989 1.44058 1.55197 1.24760 1.21261 1.04638 1.23551 0.97383 0.89148 1.25286 0.99191 0.97040 0.95035 1.70039 1.39003 1.32027 1.08664 0.85786 0.80058 0.79317 0.78279 1.19518 1.20297 1.19535 1.20154 0.97172 1.05789 0.96787 1.20725 0.98972 0.95213 0.93779 0.91487 0.92215 0.92326 0.94329 0.92583 0.92108 0.91415 0.89123 0.90951 0.96340 0.87520 0.92162 0.76582 0.87213 0.85148 0.91974 0.86170 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 2 C 0.08 0.62 2.67 -67.71 -0.18 0.44 16 3 C -0.15 -1.08 8.99 37.16 0.33 -0.74 16 4 N -0.52 -5.60 4.37 -236.32 -1.03 -6.63 16 5 C 0.01 0.15 8.84 60.06 0.53 0.68 16 6 C 0.03 0.33 5.26 -4.97 -0.03 0.30 16 7 C 0.51 7.06 7.40 -10.99 -0.08 6.98 16 8 O -0.51 -9.16 11.75 5.54 0.07 -9.09 16 9 N -0.66 -8.94 5.34 -9.82 -0.05 -8.99 16 10 C 0.04 0.65 6.30 -83.63 -0.53 0.12 16 11 C -0.09 -1.63 9.96 -39.42 -0.39 -2.02 16 12 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 13 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 14 O -0.18 -5.10 9.75 0.02 0.00 -5.10 16 15 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 19 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.18 -4.00 9.98 -39.42 -0.39 -4.39 16 24 C -0.07 -1.33 8.69 -39.42 -0.34 -1.68 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.43 6.26 -51.93 -0.33 0.10 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 6.20 -51.93 -0.32 0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 33 H 0.07 0.70 6.01 -51.93 -0.31 0.39 16 34 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.11 0.87 5.83 -51.93 -0.30 0.57 16 36 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.40 3.82 8.82 -40.82 -0.36 3.46 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.78 5.63 -52.48 -0.30 2.48 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 42 H 0.13 2.48 6.23 -52.48 -0.33 2.16 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -33.17 340.93 -7.08 -40.26 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.76 Total: 6.22 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.18 Total: -12.58 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.33 Total: -40.37 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.07 Total: -14.19 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.17 -7.08 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063500705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.632 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds