Wall clock time and date at job start Tue Mar 31 2020 07:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47309 * 2 1 4 4 N 1.46906 * 109.46816 * 120.00326 * 2 1 3 5 5 C 1.46898 * 110.99964 * 56.04285 * 4 2 1 6 6 C 1.46904 * 110.99792 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.46989 * 169.99677 * 6 4 2 8 8 O 1.21298 * 119.99894 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00072 * 180.02562 * 7 6 4 10 10 C 1.39994 * 119.99961 * 175.49296 * 9 7 6 11 11 C 1.38914 * 119.99915 * 215.12569 * 10 9 7 12 12 C 1.38008 * 119.99790 * 180.02562 * 11 10 9 13 13 C 1.38901 * 119.99971 * 0.02562 * 12 11 10 14 14 O 1.35779 * 119.99801 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99993 * 5.34431 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95669 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96724 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47187 * 59.99558 * 19 17 15 21 21 H 1.48503 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46741 * 299.99567 * 19 17 15 23 23 C 1.38911 * 120.00514 * 0.25336 * 13 12 11 24 24 C 1.37999 * 119.99944 * 359.44805 * 23 13 12 25 25 H 1.09003 * 109.46906 * 300.00207 * 1 2 3 26 26 H 1.09001 * 109.46598 * 59.99696 * 1 2 3 27 27 H 1.08993 * 109.47773 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46906 * 239.99793 * 2 1 3 29 29 H 1.09002 * 109.46762 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47121 * 299.99420 * 3 2 1 31 31 H 1.08995 * 109.46979 * 60.00179 * 3 2 1 32 32 H 1.09005 * 109.46719 * 183.95667 * 5 4 2 33 33 H 1.09002 * 109.46925 * 303.95219 * 5 4 2 34 34 H 1.08995 * 109.47341 * 63.95812 * 5 4 2 35 35 H 1.09002 * 109.46829 * 50.00261 * 6 4 2 36 36 H 1.08997 * 109.47004 * 289.99934 * 6 4 2 37 37 H 0.97001 * 119.99802 * 355.49268 * 9 7 6 38 38 H 1.08000 * 120.00692 * 359.97438 * 11 10 9 39 39 H 1.08003 * 120.00069 * 179.97438 * 12 11 10 40 40 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.99949 * 179.70423 * 23 13 12 42 42 H 1.08003 * 120.00671 * 180.27723 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.4728 -2.0536 1.2816 6 6 3.4881 -0.7127 1.2331 7 6 3.9530 -1.2051 2.5794 8 8 3.1409 -1.5098 3.4273 9 7 5.2711 -1.3070 2.8414 10 6 5.7042 -1.6736 4.1212 11 6 6.8690 -1.1260 4.6436 12 6 7.2962 -1.4878 5.9051 13 6 6.5617 -2.3999 6.6520 14 8 6.9822 -2.7563 7.8928 15 6 8.0566 -2.1074 8.3847 16 1 8.5909 -1.4013 7.7664 17 6 8.4759 -2.3466 9.6843 18 7 7.8248 -3.2066 10.4378 19 14 9.9650 -1.4480 10.3657 20 1 9.7180 0.0159 10.3322 21 1 10.2038 -1.8773 11.7672 22 1 11.1569 -1.7680 9.5397 23 6 5.3999 -2.9520 6.1273 24 6 4.9694 -2.5856 4.8684 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.7947 -2.5188 2.2133 33 1 0.3840 -2.0099 1.2544 34 1 1.8341 -2.6418 0.4381 35 1 3.8693 0.2942 1.0631 36 1 3.8603 -1.3784 0.4544 37 1 5.9197 -1.1262 2.1431 38 1 7.4409 -0.4177 4.0625 39 1 8.2020 -1.0624 6.3112 40 1 8.1179 -3.3737 11.3472 41 1 4.8315 -3.6647 6.7062 42 1 4.0638 -3.0113 4.4621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063500705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:04 Heat of formation + Delta-G solvation = -43.355679 kcal Electronic energy + Delta-G solvation = -22731.765267 eV Core-core repulsion = 19291.303352 eV Total energy + Delta-G solvation = -3440.461915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.53734 -40.46121 -38.99301 -37.86571 -35.36437 -34.15581 -33.04192 -31.86203 -30.58227 -29.19835 -27.51199 -26.94148 -25.52010 -23.91967 -23.00312 -21.49763 -20.83650 -19.86559 -18.95914 -18.43958 -17.90594 -17.08390 -16.36270 -16.28364 -16.01230 -15.83514 -15.76259 -15.47576 -15.13256 -14.78746 -14.51942 -14.18185 -13.99804 -13.60017 -13.44219 -13.30476 -13.27452 -13.12041 -12.83563 -12.69480 -12.63842 -12.44825 -12.29974 -12.14076 -11.93345 -11.53244 -11.34398 -11.03348 -10.70758 -10.48515 -9.83722 -9.24180 -8.59600 -8.44592 -6.12336 0.52366 0.56464 1.36934 1.47178 1.53714 1.69835 2.05828 2.20192 2.83649 3.01646 3.16429 3.53176 3.75599 3.97135 4.07359 4.08610 4.14522 4.30547 4.32135 4.45111 4.50141 4.59847 4.60473 4.64331 4.78111 4.84753 4.94267 4.97590 5.05863 5.07793 5.15065 5.20305 5.31862 5.35158 5.43790 5.48166 5.58888 5.69509 5.98617 6.03424 6.17316 6.20053 6.62823 6.99281 7.32642 7.80454 8.78536 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040416 B = 0.002641 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.626472 B =10597.669072 C =10921.708641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.148 4.148 4 N -0.543 5.543 5 C 0.018 3.982 6 C 0.042 3.958 7 C 0.503 3.497 8 O -0.551 6.551 9 N -0.651 5.651 10 C 0.065 3.935 11 C -0.079 4.079 12 C -0.221 4.221 13 C 0.106 3.894 14 O -0.232 6.232 15 C -0.413 4.413 16 H 0.107 0.893 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.192 4.192 24 C -0.074 4.074 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.425 0.575 38 H 0.160 0.840 39 H 0.132 0.868 40 H 0.272 0.728 41 H 0.109 0.891 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 8.714 -25.719 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.269 5.269 5 C -0.129 4.129 6 C -0.089 4.089 7 C 0.291 3.709 8 O -0.428 6.428 9 N -0.300 5.300 10 C -0.029 4.029 11 C -0.099 4.099 12 C -0.241 4.241 13 C 0.056 3.944 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.223 4.223 18 N -0.562 5.562 19 Si 0.840 3.160 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.178 1.178 23 C -0.212 4.212 24 C -0.094 4.094 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.264 0.736 38 H 0.177 0.823 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.491 8.537 -24.414 26.926 hybrid contribution 0.940 -0.503 0.087 1.070 sum -6.551 8.034 -24.327 26.444 Atomic orbital electron populations 1.21911 0.93886 1.02180 1.02432 1.21752 0.96223 0.95403 0.89800 1.21937 1.01523 0.94539 1.02525 1.61667 1.06116 1.18389 1.40691 1.22520 1.01114 0.88372 1.00934 1.22069 0.89936 1.04653 0.92206 1.21397 0.81599 0.77051 0.90836 1.90682 1.54029 1.48873 1.49221 1.43162 1.07877 1.68403 1.10511 1.17386 0.97429 0.99941 0.88166 1.20863 0.96135 0.98787 0.94152 1.21139 1.03047 1.03413 0.96488 1.19873 0.93739 0.94502 0.86308 1.83957 1.45471 1.57442 1.27027 1.21839 1.04922 1.23981 0.98203 0.87605 1.26652 1.02739 0.97878 0.95051 1.70204 1.41834 1.34865 1.09260 0.84617 0.75763 0.78171 0.77463 1.18124 1.19936 1.17805 1.20268 0.96991 1.06015 0.97927 1.20837 0.99437 0.95937 0.93145 0.93047 0.90440 0.92475 0.92872 0.91585 0.90447 0.93080 0.92251 0.90542 0.94857 0.85036 0.89157 0.73597 0.82253 0.85002 0.91905 0.87259 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.84 71.98 0.64 -1.22 16 2 C 0.08 0.99 2.67 44.91 0.12 1.11 16 3 C -0.15 -1.61 8.99 71.98 0.65 -0.96 16 4 N -0.54 -10.28 4.37 -901.59 -3.94 -14.22 16 5 C 0.02 0.37 8.84 127.69 1.13 1.50 16 6 C 0.04 0.66 5.26 85.56 0.45 1.11 16 7 C 0.50 12.59 7.40 87.66 0.65 13.23 16 8 O -0.55 -19.33 11.75 -3.08 -0.04 -19.37 16 9 N -0.65 -14.97 5.34 -303.37 -1.62 -16.59 16 10 C 0.06 2.14 6.30 38.16 0.24 2.38 16 11 C -0.08 -2.62 9.96 22.38 0.22 -2.39 16 12 C -0.22 -9.44 9.16 22.37 0.20 -9.24 16 13 C 0.11 5.45 6.65 22.59 0.15 5.60 16 14 O -0.23 -14.27 9.75 -22.83 -0.22 -14.49 16 15 C -0.41 -24.14 9.48 67.91 0.64 -23.49 16 16 H 0.11 5.54 5.20 -2.91 -0.02 5.52 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 18 N -0.92 -57.60 13.67 21.61 0.30 -57.30 16 19 Si 1.02 42.80 29.55 68.60 2.03 44.82 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 23 C -0.19 -8.98 9.98 22.37 0.22 -8.76 16 24 C -0.07 -2.92 8.69 22.38 0.19 -2.73 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.73 6.26 -2.39 -0.01 0.71 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.58 6.20 -2.39 -0.01 0.56 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.58 5.88 -2.38 -0.01 1.56 16 33 H 0.08 1.41 6.01 -2.39 -0.01 1.40 16 34 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.13 1.46 5.83 -2.39 -0.01 1.45 16 36 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.43 5.79 8.82 -92.71 -0.82 4.97 16 38 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 42 H 0.13 5.15 6.23 -2.91 -0.02 5.13 16 Total: -1.00 -78.52 340.93 2.71 -75.81 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.23 Total: 26.24 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 5.98 Total: -24.89 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -5.26 Total: -88.12 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.26 Total: -33.86 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -78.52 2.71 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063500705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.456 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds