Wall clock time and date at job start Tue Mar 31 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46804 * 2 1 4 4 N 1.46501 * 109.46475 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00091 * 269.99903 * 4 3 2 6 6 C 1.34778 * 119.99866 * 90.00876 * 4 3 2 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99808 * 179.97438 * 6 4 3 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08999 * 109.47332 * 299.99871 * 1 2 3 26 26 H 1.09004 * 109.47194 * 60.00267 * 1 2 3 27 27 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47332 * 240.00129 * 2 1 3 29 29 H 1.08999 * 109.46543 * 120.00000 * 2 1 3 30 30 H 1.08999 * 109.47071 * 59.99969 * 3 2 1 31 31 H 1.08990 * 109.47112 * 299.99729 * 3 2 1 32 32 H 1.09008 * 109.47115 * 270.00402 * 5 4 3 33 33 H 1.09004 * 109.47392 * 30.00446 * 5 4 3 34 34 H 1.08993 * 109.47095 * 150.00535 * 5 4 3 35 35 H 0.97001 * 120.00514 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 37 37 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.1793 1.4425 -1.1663 7 8 3.5718 1.4420 -2.2195 8 7 5.5270 1.4429 -1.1657 9 6 6.2601 1.4423 -2.4342 10 6 7.7416 1.4436 -2.1582 11 6 8.4209 0.2457 -2.0308 12 6 9.7786 0.2435 -1.7784 13 6 10.4618 1.4461 -1.6519 14 8 11.7965 1.4472 -1.4043 15 6 12.4204 0.2519 -1.4062 16 1 11.8470 -0.6564 -1.5176 17 6 13.7984 0.1890 -1.2649 18 7 14.4971 1.2955 -1.1297 19 14 14.6629 -1.4669 -1.2682 20 1 14.4022 -2.1590 -2.5559 21 1 16.1246 -1.2626 -1.1036 22 1 14.1493 -2.2956 -0.1481 23 6 9.7758 2.6473 -1.7741 24 6 8.4191 2.6428 -2.0322 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.4185 2.4705 1.5843 33 1 3.6476 0.9289 2.0292 34 1 5.1894 0.9289 1.1398 35 1 6.0118 1.4436 -0.3255 36 1 5.9967 2.3318 -3.0064 37 1 5.9974 0.5519 -3.0053 38 1 7.8891 -0.6891 -2.1296 39 1 10.3085 -0.6923 -1.6794 40 1 15.4609 1.2514 -1.0305 41 1 10.3035 3.5840 -1.6719 42 1 7.8858 3.5766 -2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069318413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:58 Heat of formation + Delta-G solvation = -35.842455 kcal Electronic energy + Delta-G solvation = -22419.801503 eV Core-core repulsion = 18979.665386 eV Total energy + Delta-G solvation = -3440.136117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21641 -39.10979 -37.03551 -36.12334 -34.54192 -33.27083 -32.34044 -30.28869 -29.82659 -27.60400 -26.39763 -25.48950 -24.27613 -22.05548 -21.92065 -20.63927 -19.90844 -18.26281 -18.05607 -17.02875 -16.52666 -15.78229 -15.21229 -14.83609 -14.73153 -14.55178 -14.34175 -13.90222 -13.70712 -13.63597 -13.37444 -13.24603 -12.81991 -12.77273 -12.62411 -12.27069 -12.09045 -11.95828 -11.69457 -11.54763 -11.38894 -10.95566 -10.89586 -10.78591 -10.70266 -10.50588 -10.09666 -9.43709 -9.06306 -8.91524 -8.59744 -8.28767 -7.33533 -6.53457 -4.12438 2.02752 2.12677 2.75564 3.08287 3.09851 3.12430 3.23570 3.89874 3.99822 4.52288 4.72010 4.75348 4.85394 5.00789 5.05195 5.13127 5.17924 5.22154 5.26024 5.41972 5.45334 5.47915 5.57171 5.67233 5.75851 5.82612 5.86059 5.96495 6.02032 6.11800 6.35227 6.38360 6.58458 6.63192 6.80157 6.86647 6.97338 7.15015 7.27704 7.34656 7.71090 7.91094 7.98068 8.62882 8.91729 9.59902 10.63962 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.002581 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.771417 B =10847.804141 C =11165.592342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.134 3.866 4 N -0.638 5.638 5 C 0.079 3.921 6 C 0.702 3.298 7 O -0.595 6.595 8 N -0.738 5.738 9 C 0.196 3.804 10 C -0.214 4.214 11 C -0.050 4.050 12 C -0.237 4.237 13 C 0.160 3.840 14 O -0.173 6.173 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.196 4.196 24 C -0.054 4.054 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.272 0.728 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 -1.229 4.969 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.011 3.989 4 N -0.376 5.376 5 C -0.065 4.065 6 C 0.403 3.597 7 O -0.474 6.474 8 N -0.394 5.394 9 C 0.074 3.926 10 C -0.215 4.215 11 C -0.069 4.069 12 C -0.257 4.257 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.767 3.233 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.215 4.215 24 C -0.072 4.072 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.029 -0.967 4.259 20.499 hybrid contribution 0.795 -0.932 0.532 1.336 sum -19.234 -1.899 4.791 19.912 Atomic orbital electron populations 1.21686 0.95247 1.01848 1.01846 1.21917 0.95994 0.97586 1.02505 1.21345 0.77981 0.96740 1.02879 1.47065 1.06574 1.79017 1.04913 1.21721 0.97142 1.01794 0.85818 1.15972 0.82096 0.77900 0.83717 1.90892 1.68005 1.58481 1.29975 1.45665 1.04117 1.79105 1.10525 1.19829 0.87174 1.01686 0.83949 1.19231 0.93885 0.93677 1.14753 1.20647 0.93633 0.96465 0.96165 1.21157 0.94665 0.98475 1.11362 1.19442 0.85363 0.93314 0.91327 1.83977 1.14956 1.33130 1.75504 1.21306 0.90256 0.83058 1.52377 0.88979 1.25320 0.95391 0.99390 0.96366 1.70023 1.07559 1.27102 1.44682 0.85763 0.78345 0.79997 0.79244 1.19416 1.20212 1.19447 1.20213 0.94058 0.96303 1.10916 1.20540 0.93153 0.96610 0.96936 0.92754 0.92443 0.92587 0.91434 0.92146 0.90891 0.89848 0.92593 0.90954 0.91282 0.76715 0.91742 0.91811 0.87414 0.85436 0.91823 0.86378 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.23 6.26 -26.73 -0.17 -1.39 16 3 C 0.13 1.25 5.41 -4.04 -0.02 1.23 16 4 N -0.64 -6.92 2.87 -187.35 -0.54 -7.45 16 5 C 0.08 0.61 10.20 59.85 0.61 1.22 16 6 C 0.70 10.03 8.28 -86.92 -0.72 9.31 16 7 O -0.59 -10.62 15.92 5.29 0.08 -10.54 16 8 N -0.74 -9.81 5.41 -66.42 -0.36 -10.17 16 9 C 0.20 2.86 5.80 -5.19 -0.03 2.83 16 10 C -0.21 -3.46 5.25 -104.58 -0.55 -4.01 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 12 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 13 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 14 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 15 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 16 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -24.60 13.67 55.48 0.76 -23.85 16 19 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 24 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.09 16 31 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 35 H 0.40 4.69 6.20 -40.82 -0.25 4.44 16 36 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -31.73 354.26 -7.99 -39.72 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.16 Total: 6.34 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.09 Total: -9.55 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.14 Total: -41.47 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.73 -7.99 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069318413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.875 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds