Wall clock time and date at job start Tue Mar 31 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46804 * 2 1 4 4 N 1.46501 * 109.46475 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00091 * 269.99903 * 4 3 2 6 6 C 1.34778 * 119.99866 * 90.00876 * 4 3 2 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99808 * 179.97438 * 6 4 3 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08999 * 109.47332 * 299.99871 * 1 2 3 26 26 H 1.09004 * 109.47194 * 60.00267 * 1 2 3 27 27 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47332 * 240.00129 * 2 1 3 29 29 H 1.08999 * 109.46543 * 120.00000 * 2 1 3 30 30 H 1.08999 * 109.47071 * 59.99969 * 3 2 1 31 31 H 1.08990 * 109.47112 * 299.99729 * 3 2 1 32 32 H 1.09008 * 109.47115 * 270.00402 * 5 4 3 33 33 H 1.09004 * 109.47392 * 30.00446 * 5 4 3 34 34 H 1.08993 * 109.47095 * 150.00535 * 5 4 3 35 35 H 0.97001 * 120.00514 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 37 37 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.1793 1.4425 -1.1663 7 8 3.5718 1.4420 -2.2195 8 7 5.5270 1.4429 -1.1657 9 6 6.2601 1.4423 -2.4342 10 6 7.7416 1.4436 -2.1582 11 6 8.4209 0.2457 -2.0308 12 6 9.7786 0.2435 -1.7784 13 6 10.4618 1.4461 -1.6519 14 8 11.7965 1.4472 -1.4043 15 6 12.4204 0.2519 -1.4062 16 1 11.8470 -0.6564 -1.5176 17 6 13.7984 0.1890 -1.2649 18 7 14.4971 1.2955 -1.1297 19 14 14.6629 -1.4669 -1.2682 20 1 14.4022 -2.1590 -2.5559 21 1 16.1246 -1.2626 -1.1036 22 1 14.1493 -2.2956 -0.1481 23 6 9.7758 2.6473 -1.7741 24 6 8.4191 2.6428 -2.0322 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.4185 2.4705 1.5843 33 1 3.6476 0.9289 2.0292 34 1 5.1894 0.9289 1.1398 35 1 6.0118 1.4436 -0.3255 36 1 5.9967 2.3318 -3.0064 37 1 5.9974 0.5519 -3.0053 38 1 7.8891 -0.6891 -2.1296 39 1 10.3085 -0.6923 -1.6794 40 1 15.4609 1.2514 -1.0305 41 1 10.3035 3.5840 -1.6719 42 1 7.8858 3.5766 -2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069318413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:58 Heat of formation + Delta-G solvation = -55.597233 kcal Electronic energy + Delta-G solvation = -22420.658135 eV Core-core repulsion = 18979.665386 eV Total energy + Delta-G solvation = -3440.992749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31081 -40.72862 -38.59794 -37.10934 -35.76865 -34.36535 -33.95207 -31.84275 -31.24652 -28.28817 -27.79049 -26.95999 -25.48532 -23.64659 -22.70212 -22.12621 -20.94164 -19.87634 -19.24462 -18.76020 -17.54932 -16.84488 -16.42734 -16.33399 -16.08421 -15.71989 -15.62531 -15.40382 -15.15248 -14.80360 -14.59285 -14.36668 -14.11007 -13.84848 -13.63805 -13.37449 -13.27391 -13.02893 -12.88090 -12.65928 -12.51824 -12.37729 -12.24049 -12.18895 -12.13273 -11.58227 -11.27801 -11.20641 -10.79722 -10.19182 -9.81683 -9.47717 -9.02273 -8.48011 -6.16259 0.52476 0.57434 1.36103 1.45525 1.51889 1.78181 2.14818 2.17438 2.76915 3.05393 3.24426 3.48967 3.86893 4.02869 4.03275 4.10553 4.17241 4.24556 4.43349 4.45973 4.55595 4.56582 4.64804 4.71999 4.77776 4.80669 4.90078 4.96233 5.03787 5.14276 5.17842 5.23201 5.26365 5.36942 5.47958 5.52459 5.62463 5.68700 5.75494 5.95679 6.01344 6.15514 6.96525 6.97285 7.56167 7.75667 8.74460 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.002581 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.771417 B =10847.804141 C =11165.592342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.130 3.870 4 N -0.634 5.634 5 C 0.073 3.927 6 C 0.696 3.304 7 O -0.636 6.636 8 N -0.732 5.732 9 C 0.203 3.797 10 C -0.182 4.182 11 C -0.045 4.045 12 C -0.243 4.243 13 C 0.123 3.877 14 O -0.228 6.228 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.018 2.982 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.256 1.256 23 C -0.204 4.204 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.768 -2.180 5.866 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.008 3.992 4 N -0.370 5.370 5 C -0.069 4.069 6 C 0.398 3.602 7 O -0.518 6.518 8 N -0.389 5.389 9 C 0.079 3.921 10 C -0.183 4.183 11 C -0.063 4.063 12 C -0.262 4.262 13 C 0.072 3.928 14 O -0.134 6.134 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.223 4.223 24 C -0.061 4.061 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.823 -1.916 5.196 23.485 hybrid contribution 1.224 -0.536 0.232 1.356 sum -21.598 -2.452 5.428 22.405 Atomic orbital electron populations 1.21666 0.93857 1.02345 1.02431 1.21848 0.97190 0.96884 1.01487 1.21502 0.77137 0.97236 1.03364 1.47178 1.07264 1.77650 1.04948 1.21953 0.97281 1.02967 0.84730 1.16139 0.82118 0.77799 0.84174 1.90868 1.68754 1.60340 1.31801 1.45417 1.04001 1.79109 1.10365 1.19703 0.85581 1.02122 0.84665 1.19479 0.94829 0.93006 1.11004 1.20923 0.92277 0.98303 0.94838 1.21238 0.96007 0.97407 1.11551 1.19990 0.84550 0.95350 0.92905 1.83948 1.17101 1.33611 1.78729 1.21790 0.91014 0.83631 1.52587 0.87912 1.26584 0.95922 1.03650 0.95809 1.70169 1.07822 1.29827 1.47776 0.84660 0.76926 0.74834 0.79904 1.18297 1.19757 1.18024 1.20440 0.95391 0.95447 1.11004 1.20867 0.91752 0.98428 0.95047 0.90928 0.93099 0.92172 0.94492 0.91004 0.87743 0.91961 0.91410 0.88575 0.91258 0.75650 0.91321 0.91653 0.84469 0.86099 0.91792 0.86584 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.98 16 2 C -0.14 -2.09 6.26 30.60 0.19 -1.90 16 3 C 0.13 2.13 5.41 86.38 0.47 2.59 16 4 N -0.63 -12.08 2.87 -864.92 -2.48 -14.57 16 5 C 0.07 0.86 10.20 127.77 1.30 2.16 16 6 C 0.70 18.42 8.28 179.06 1.48 19.90 16 7 O -0.64 -21.97 15.92 -3.98 -0.06 -22.03 16 8 N -0.73 -17.30 5.41 -482.31 -2.61 -19.92 16 9 C 0.20 5.26 5.80 85.63 0.50 5.75 16 10 C -0.18 -5.34 5.25 -19.84 -0.10 -5.44 16 11 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 12 C -0.24 -9.96 9.17 22.39 0.21 -9.75 16 13 C 0.12 5.84 6.65 22.58 0.15 5.99 16 14 O -0.23 -13.27 9.76 -22.72 -0.22 -13.49 16 15 C -0.41 -23.41 9.49 67.92 0.64 -22.77 16 16 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 17 C -0.02 -1.20 5.49 84.84 0.47 -0.74 16 18 N -0.92 -55.26 13.67 21.62 0.30 -54.97 16 19 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 C -0.20 -8.15 9.99 22.39 0.22 -7.93 16 24 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.06 8.07 -2.39 -0.02 1.04 16 31 H 0.06 1.30 7.42 -2.39 -0.02 1.28 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.10 0.71 8.07 -2.38 -0.02 0.69 16 34 H 0.07 0.83 6.36 -2.39 -0.02 0.81 16 35 H 0.41 8.23 6.20 -92.71 -0.57 7.65 16 36 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 37 H 0.07 1.74 8.08 -2.39 -0.02 1.73 16 38 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.32 16 41 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -73.52 354.26 4.06 -69.46 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.45 Total: 27.16 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 6.67 Total: -15.45 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -4.80 Total: -89.45 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.29 Total: -35.52 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.52 4.06 -69.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069318413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.865 kcal (2) G-P(sol) polarization free energy of solvation -73.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds