Wall clock time and date at job start Tue Mar 31 2020 07:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 N 1.46496 * 109.47308 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99783 * 264.53944 * 4 3 2 6 6 H 1.07997 * 119.99630 * 146.01267 * 5 4 3 7 7 C 1.38954 * 120.00162 * 326.01396 * 5 4 3 8 8 N 1.31414 * 119.99479 * 337.80940 * 7 5 4 9 9 Si 1.86796 * 120.00102 * 157.80847 * 7 5 4 10 10 H 1.48497 * 109.47250 * 90.00097 * 9 7 5 11 11 H 1.48501 * 109.47082 * 210.00144 * 9 7 5 12 12 H 1.48502 * 109.46762 * 330.00017 * 9 7 5 13 13 C 1.34771 * 120.00148 * 84.54037 * 4 3 2 14 14 O 1.21291 * 120.00239 * 359.97438 * 13 4 3 15 15 C 1.50701 * 119.99998 * 180.02562 * 13 4 3 16 16 C 1.53006 * 109.47071 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.47059 * 179.97438 * 16 15 13 18 18 O 1.42895 * 109.47184 * 179.97438 * 17 16 15 19 19 C 1.35916 * 117.00230 * 179.97438 * 18 17 16 20 20 C 1.39140 * 120.47215 * 180.24097 * 19 18 17 21 21 C 1.38536 * 118.36932 * 180.24087 * 20 19 18 22 22 C 1.38258 * 119.22347 * 359.48598 * 21 20 19 23 23 N 1.31842 * 120.88461 * 0.29305 * 22 21 20 24 24 C 1.31847 * 121.78301 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47120 * 299.99963 * 1 2 3 27 27 H 1.09002 * 109.47051 * 59.99986 * 1 2 3 28 28 H 1.09000 * 109.47120 * 240.00036 * 2 1 3 29 29 H 1.09002 * 109.47051 * 120.00014 * 2 1 3 30 30 H 1.09000 * 109.46943 * 59.99928 * 3 2 1 31 31 H 1.09002 * 109.47019 * 300.00034 * 3 2 1 32 32 H 0.97007 * 119.99482 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47294 * 59.99823 * 15 13 4 34 34 H 1.09003 * 109.46964 * 299.99584 * 15 13 4 35 35 H 1.09000 * 109.46822 * 59.99987 * 16 15 13 36 36 H 1.08994 * 109.46735 * 299.99868 * 16 15 13 37 37 H 1.09006 * 109.46989 * 59.99503 * 17 16 15 38 38 H 1.09003 * 109.47146 * 300.00437 * 17 16 15 39 39 H 1.07994 * 120.81586 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.38888 * 179.75532 * 21 20 19 41 41 H 1.07997 * 119.55880 * 180.27874 * 22 21 20 42 42 H 1.07997 * 119.65951 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5552 1.1811 6 1 5.1326 1.0423 1.3099 7 6 3.6747 2.3294 2.2130 8 7 2.8037 3.2778 1.9504 9 14 4.2186 2.0222 3.9734 10 1 5.4091 2.8565 4.2764 11 1 3.1155 2.3781 4.9016 12 1 4.5637 0.5876 4.1415 13 6 4.1784 1.3315 -1.1628 14 8 3.5716 1.2313 -2.2082 15 6 5.6854 1.3309 -1.1633 16 6 6.1949 1.1947 -2.5996 17 6 7.7248 1.1947 -2.6002 18 8 8.2006 1.0668 -3.9416 19 6 9.5480 1.0505 -4.1195 20 6 10.0899 0.9339 -5.3957 21 6 11.4689 0.9167 -5.5263 22 6 12.2555 1.0259 -4.3945 23 7 11.7100 1.1397 -3.1996 24 6 10.4024 1.1548 -3.0318 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4429 3.8180 2.6708 33 1 6.0486 0.4936 -0.5676 34 1 6.0493 2.2655 -0.7363 35 1 5.8316 2.0324 -3.1949 36 1 5.8310 0.2603 -3.0270 37 1 8.0884 0.3572 -2.0046 38 1 8.0883 2.1292 -2.1728 39 1 9.4510 0.8552 -6.2629 40 1 11.9243 0.8235 -6.5011 41 1 13.3312 1.0177 -4.4905 42 1 9.9923 1.2500 -2.0372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079686987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:23 Heat of formation + Delta-G solvation = -51.831308 kcal Electronic energy + Delta-G solvation = -22617.582651 eV Core-core repulsion = 19176.753205 eV Total energy + Delta-G solvation = -3440.829446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.68844 -38.76657 -38.18426 -35.28643 -33.49940 -32.78564 -32.31735 -31.30314 -30.30537 -27.38329 -25.70085 -24.56060 -23.76306 -23.00396 -21.47860 -20.47556 -19.09831 -18.35297 -17.07104 -16.68872 -16.53138 -16.33603 -15.83294 -14.87728 -14.62102 -14.49543 -14.34768 -13.99841 -13.74098 -13.60876 -13.20550 -12.94459 -12.68906 -12.32762 -12.31351 -11.74272 -11.64173 -11.42962 -11.29552 -11.09853 -11.00410 -10.96517 -10.65094 -10.40563 -10.38262 -10.22624 -9.88330 -9.75176 -9.60369 -9.11997 -8.57713 -8.45459 -7.56567 -6.43554 -4.09924 0.93557 1.12905 3.01067 3.06394 3.17595 3.21035 3.63571 3.87415 4.06441 4.33262 4.52161 4.65117 4.74085 4.85141 4.93463 5.06276 5.14236 5.23344 5.34574 5.42638 5.76179 5.78205 5.80264 5.81656 5.88100 5.89312 6.00972 6.17076 6.34424 6.37816 6.51679 6.53364 6.59852 6.67557 6.69558 6.82034 7.10828 7.19602 7.32497 7.46317 7.78125 7.88582 8.32504 9.02531 9.48780 9.92284 10.57650 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003114 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.459067 B = 8990.483288 C =10180.299329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.438 5.438 5 C -0.342 4.342 6 H 0.090 0.910 7 C 0.044 3.956 8 N -0.856 5.856 9 Si 0.911 3.089 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.467 3.533 14 O -0.607 6.607 15 C -0.116 4.116 16 C -0.099 4.099 17 C 0.056 3.944 18 O -0.306 6.306 19 C 0.088 3.912 20 C -0.115 4.115 21 C -0.133 4.133 22 C 0.051 3.949 23 N -0.451 5.451 24 C 0.014 3.986 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -4.013 -7.446 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.155 5.155 5 C -0.470 4.470 6 H 0.108 0.892 7 C -0.162 4.162 8 N -0.492 5.492 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.256 3.744 14 O -0.494 6.494 15 C -0.156 4.156 16 C -0.137 4.137 17 C -0.019 4.019 18 O -0.218 6.218 19 C 0.040 3.960 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.107 4.107 23 N -0.160 5.160 24 C -0.144 4.144 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.911 -3.842 -7.221 13.636 hybrid contribution -0.220 -0.099 0.544 0.595 sum 10.691 -3.941 -6.677 13.206 Atomic orbital electron populations 1.21654 0.96609 1.00414 1.01387 1.21833 0.94713 0.99512 1.01240 1.21445 0.81458 0.94476 1.03541 1.43492 1.04830 1.62202 1.04984 1.19420 1.07504 1.29438 0.90649 0.89201 1.25325 0.96975 0.93520 1.00424 1.69951 1.29945 1.16112 1.33209 0.86193 0.78487 0.79148 0.82432 1.20196 1.20680 1.19309 1.20251 0.89166 0.81278 0.83708 1.90529 1.70443 1.56604 1.31826 1.21228 0.95216 1.03836 0.95297 1.21252 0.89808 1.04578 0.98035 1.23088 0.96876 1.01423 0.80511 1.86120 1.17370 1.87080 1.31253 1.20154 0.84374 0.96327 0.95153 1.20986 0.95269 1.02157 0.95706 1.22003 0.93186 0.99487 1.00628 1.22634 1.00562 0.99908 0.87616 1.67526 1.12479 1.09617 1.26373 1.23026 0.89307 1.03194 0.98850 0.93651 0.93019 0.93130 0.92883 0.92455 0.87575 0.93093 0.91971 0.90181 0.89303 0.90440 0.90599 0.91703 0.91556 0.84023 0.84245 0.82721 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.13 -2.76 6.22 -26.73 -0.17 -2.92 16 3 C 0.11 2.72 4.90 -4.04 -0.02 2.70 16 4 N -0.44 -10.79 2.56 -114.81 -0.29 -11.08 16 5 C -0.34 -8.36 8.70 -14.93 -0.13 -8.49 16 6 H 0.09 2.06 6.97 -52.49 -0.37 1.69 16 7 C 0.04 1.07 4.92 -17.47 -0.09 0.98 16 8 N -0.86 -22.04 11.34 55.50 0.63 -21.41 16 9 Si 0.91 18.79 29.61 -169.99 -5.03 13.76 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 C 0.47 11.04 7.60 -10.99 -0.08 10.96 16 14 O -0.61 -15.73 15.65 5.55 0.09 -15.64 16 15 C -0.12 -2.15 4.36 -27.88 -0.12 -2.27 16 16 C -0.10 -1.62 4.87 -26.73 -0.13 -1.75 16 17 C 0.06 0.74 4.75 37.16 0.18 0.91 16 18 O -0.31 -4.30 10.15 -19.47 -0.20 -4.50 16 19 C 0.09 1.12 6.71 -39.07 -0.26 0.86 16 20 C -0.11 -1.22 10.13 -39.14 -0.40 -1.62 16 21 C -0.13 -1.17 10.11 -39.46 -0.40 -1.57 16 22 C 0.05 0.50 11.18 -17.54 -0.20 0.31 16 23 N -0.45 -5.70 10.36 -13.13 -0.14 -5.83 16 24 C 0.01 0.18 10.22 -17.37 -0.18 0.00 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.11 2.66 5.35 -51.93 -0.28 2.38 16 31 H 0.05 1.27 7.59 -51.93 -0.39 0.87 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.22 16 33 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 34 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 35 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 36 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 37 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 38 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.16 1.78 6.32 -52.49 -0.33 1.45 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -29.72 352.28 -7.60 -37.32 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.34 Total: 6.03 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.62 Total: -3.95 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.20 Total: -38.33 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.11 Total: -20.14 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.72 -7.60 -37.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079686987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.509 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds