Wall clock time and date at job start Tue Mar 31 2020 07:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 N 1.46496 * 109.47308 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99783 * 264.53944 * 4 3 2 6 6 H 1.07997 * 119.99630 * 146.01267 * 5 4 3 7 7 C 1.38954 * 120.00162 * 326.01396 * 5 4 3 8 8 N 1.31414 * 119.99479 * 337.80940 * 7 5 4 9 9 Si 1.86796 * 120.00102 * 157.80847 * 7 5 4 10 10 H 1.48497 * 109.47250 * 90.00097 * 9 7 5 11 11 H 1.48501 * 109.47082 * 210.00144 * 9 7 5 12 12 H 1.48502 * 109.46762 * 330.00017 * 9 7 5 13 13 C 1.34771 * 120.00148 * 84.54037 * 4 3 2 14 14 O 1.21291 * 120.00239 * 359.97438 * 13 4 3 15 15 C 1.50701 * 119.99998 * 180.02562 * 13 4 3 16 16 C 1.53006 * 109.47071 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.47059 * 179.97438 * 16 15 13 18 18 O 1.42895 * 109.47184 * 179.97438 * 17 16 15 19 19 C 1.35916 * 117.00230 * 179.97438 * 18 17 16 20 20 C 1.39140 * 120.47215 * 180.24097 * 19 18 17 21 21 C 1.38536 * 118.36932 * 180.24087 * 20 19 18 22 22 C 1.38258 * 119.22347 * 359.48598 * 21 20 19 23 23 N 1.31842 * 120.88461 * 0.29305 * 22 21 20 24 24 C 1.31847 * 121.78301 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47120 * 299.99963 * 1 2 3 27 27 H 1.09002 * 109.47051 * 59.99986 * 1 2 3 28 28 H 1.09000 * 109.47120 * 240.00036 * 2 1 3 29 29 H 1.09002 * 109.47051 * 120.00014 * 2 1 3 30 30 H 1.09000 * 109.46943 * 59.99928 * 3 2 1 31 31 H 1.09002 * 109.47019 * 300.00034 * 3 2 1 32 32 H 0.97007 * 119.99482 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47294 * 59.99823 * 15 13 4 34 34 H 1.09003 * 109.46964 * 299.99584 * 15 13 4 35 35 H 1.09000 * 109.46822 * 59.99987 * 16 15 13 36 36 H 1.08994 * 109.46735 * 299.99868 * 16 15 13 37 37 H 1.09006 * 109.46989 * 59.99503 * 17 16 15 38 38 H 1.09003 * 109.47146 * 300.00437 * 17 16 15 39 39 H 1.07994 * 120.81586 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.38888 * 179.75532 * 21 20 19 41 41 H 1.07997 * 119.55880 * 180.27874 * 22 21 20 42 42 H 1.07997 * 119.65951 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5552 1.1811 6 1 5.1326 1.0423 1.3099 7 6 3.6747 2.3294 2.2130 8 7 2.8037 3.2778 1.9504 9 14 4.2186 2.0222 3.9734 10 1 5.4091 2.8565 4.2764 11 1 3.1155 2.3781 4.9016 12 1 4.5637 0.5876 4.1415 13 6 4.1784 1.3315 -1.1628 14 8 3.5716 1.2313 -2.2082 15 6 5.6854 1.3309 -1.1633 16 6 6.1949 1.1947 -2.5996 17 6 7.7248 1.1947 -2.6002 18 8 8.2006 1.0668 -3.9416 19 6 9.5480 1.0505 -4.1195 20 6 10.0899 0.9339 -5.3957 21 6 11.4689 0.9167 -5.5263 22 6 12.2555 1.0259 -4.3945 23 7 11.7100 1.1397 -3.1996 24 6 10.4024 1.1548 -3.0318 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4429 3.8180 2.6708 33 1 6.0486 0.4936 -0.5676 34 1 6.0493 2.2655 -0.7363 35 1 5.8316 2.0324 -3.1949 36 1 5.8310 0.2603 -3.0270 37 1 8.0884 0.3572 -2.0046 38 1 8.0883 2.1292 -2.1728 39 1 9.4510 0.8552 -6.2629 40 1 11.9243 0.8235 -6.5011 41 1 13.3312 1.0177 -4.4905 42 1 9.9923 1.2500 -2.0372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079686987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:22 Heat of formation + Delta-G solvation = -68.519637 kcal Electronic energy + Delta-G solvation = -22618.306311 eV Core-core repulsion = 19176.753205 eV Total energy + Delta-G solvation = -3441.553106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.56285 -40.54815 -39.19784 -37.11227 -34.96416 -34.36684 -33.28381 -33.06907 -31.19285 -28.76718 -27.41037 -26.16057 -24.74604 -23.95604 -22.79237 -22.04909 -20.92828 -19.38742 -18.50972 -17.93082 -17.54608 -17.45954 -17.36790 -16.60585 -16.12452 -16.02195 -15.51845 -15.34131 -14.97995 -14.85001 -14.32109 -14.28707 -13.93323 -13.81680 -13.39232 -13.22620 -13.16474 -13.05258 -12.77685 -12.57255 -12.46697 -12.41003 -12.24697 -12.03519 -11.96566 -11.66107 -11.52076 -10.97735 -10.67294 -10.43927 -10.34981 -9.48425 -9.46313 -8.30069 -6.02915 0.14384 0.30083 1.42950 1.50924 1.61572 2.00178 2.05415 2.34015 2.82505 3.00641 3.12282 3.55688 3.68334 3.88343 3.92407 4.02965 4.11596 4.16633 4.17705 4.29260 4.36212 4.47439 4.51304 4.55875 4.61719 4.66571 4.74866 4.91922 4.96891 5.02990 5.07655 5.13954 5.14511 5.21125 5.27907 5.36177 5.46972 5.57538 5.60326 6.02011 6.24425 6.43544 6.96980 7.13479 7.60718 8.04859 8.72522 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003114 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.459067 B = 8990.483288 C =10180.299329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.451 5.451 5 C -0.357 4.357 6 H 0.105 0.895 7 C 0.003 3.997 8 N -0.891 5.891 9 Si 0.981 3.019 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.450 3.550 14 O -0.639 6.639 15 C -0.105 4.105 16 C -0.088 4.088 17 C 0.064 3.936 18 O -0.324 6.324 19 C 0.065 3.935 20 C -0.122 4.122 21 C -0.121 4.121 22 C 0.047 3.953 23 N -0.479 5.479 24 C 0.000 4.000 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.272 0.728 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -4.955 -7.159 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.168 5.168 5 C -0.484 4.484 6 H 0.123 0.877 7 C -0.200 4.200 8 N -0.528 5.528 9 Si 0.805 3.195 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.184 1.184 13 C 0.240 3.760 14 O -0.528 6.528 15 C -0.145 4.145 16 C -0.126 4.126 17 C -0.010 4.010 18 O -0.237 6.237 19 C 0.017 3.983 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.110 4.110 23 N -0.188 5.188 24 C -0.157 4.157 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.172 0.828 40 H 0.196 0.804 41 H 0.202 0.798 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.870 -4.790 -6.929 15.382 hybrid contribution -0.777 0.225 0.338 0.877 sum 12.093 -4.565 -6.591 14.510 Atomic orbital electron populations 1.21614 0.93730 1.02351 1.01688 1.21718 0.97223 0.96886 1.00444 1.21413 0.81763 0.96263 1.01562 1.43796 1.05211 1.62167 1.05637 1.19830 1.08209 1.29737 0.90669 0.87743 1.26179 0.96892 0.92878 1.04069 1.70057 1.31288 1.17080 1.34423 0.85125 0.77921 0.79303 0.77199 1.19586 1.20954 1.18407 1.21145 0.91354 0.80473 0.82997 1.90494 1.71660 1.57865 1.32780 1.21161 0.91473 1.04806 0.97029 1.21056 0.92322 1.03026 0.96207 1.22906 0.94318 1.02862 0.80927 1.86058 1.18553 1.87801 1.31272 1.20374 0.83623 0.98037 0.96249 1.21354 0.96500 1.01611 0.95404 1.22410 0.92204 0.97335 1.02073 1.23255 1.02220 0.98384 0.87190 1.67548 1.12490 1.10789 1.28006 1.23109 0.89552 1.03864 0.99146 0.90861 0.92517 0.93064 0.94200 0.92486 0.88864 0.95504 0.91841 0.88165 0.88835 0.92426 0.91825 0.89935 0.90386 0.82779 0.80394 0.79779 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.91 71.98 0.71 -3.78 16 2 C -0.12 -5.13 6.22 30.59 0.19 -4.94 16 3 C 0.11 5.58 4.90 86.38 0.42 6.00 16 4 N -0.45 -22.67 2.56 -635.55 -1.63 -24.29 16 5 C -0.36 -17.38 8.70 84.04 0.73 -16.64 16 6 H 0.11 4.66 6.97 -2.91 -0.02 4.64 16 7 C 0.00 0.14 4.92 84.93 0.42 0.56 16 8 N -0.89 -46.44 11.34 21.66 0.25 -46.19 16 9 Si 0.98 37.86 29.61 68.60 2.03 39.89 16 10 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 11 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 C 0.45 21.79 7.60 87.66 0.67 22.45 16 14 O -0.64 -34.36 15.65 -3.06 -0.05 -34.41 16 15 C -0.11 -3.89 4.36 29.85 0.13 -3.76 16 16 C -0.09 -2.92 4.87 30.60 0.15 -2.77 16 17 C 0.06 1.67 4.75 71.98 0.34 2.01 16 18 O -0.32 -9.03 10.15 -92.60 -0.94 -9.97 16 19 C 0.06 1.59 6.71 22.60 0.15 1.75 16 20 C -0.12 -2.39 10.13 22.56 0.23 -2.16 16 21 C -0.12 -1.76 10.11 22.35 0.23 -1.54 16 22 C 0.05 0.82 11.18 84.70 0.95 1.77 16 23 N -0.48 -11.43 10.36 -195.44 -2.02 -13.45 16 24 C 0.00 0.01 10.22 84.80 0.87 0.87 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.09 4.82 5.35 -2.39 -0.01 4.81 16 31 H 0.03 1.40 7.59 -2.39 -0.02 1.38 16 32 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 33 H 0.10 3.29 7.64 -2.39 -0.02 3.28 16 34 H 0.09 3.38 8.10 -2.39 -0.02 3.36 16 35 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 36 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 37 H 0.08 1.84 7.68 -2.38 -0.02 1.82 16 38 H 0.08 1.82 7.68 -2.39 -0.02 1.81 16 39 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.16 3.56 6.32 -2.91 -0.02 3.54 16 Total: -1.00 -65.59 352.28 4.82 -60.77 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 1.00 Total: 27.84 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.18 Total: -0.19 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.40 Total: -83.93 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.99 Total: -44.37 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -65.59 4.82 -60.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079686987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.751 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds