Wall clock time and date at job start Tue Mar 31 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47035 * 2 1 4 4 N 1.46501 * 109.46488 * 120.00188 * 2 1 3 5 5 C 1.46499 * 120.00091 * 299.99633 * 4 2 1 6 6 C 1.34778 * 119.99866 * 120.00606 * 4 2 1 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 4 2 8 8 N 1.34769 * 119.99808 * 179.97438 * 6 4 2 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08997 * 109.47062 * 300.00356 * 1 2 3 26 26 H 1.08998 * 109.46790 * 59.99935 * 1 2 3 27 27 H 1.08996 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47062 * 239.99644 * 2 1 3 29 29 H 1.08998 * 109.47385 * 299.99701 * 3 2 1 30 30 H 1.09001 * 109.47062 * 60.00149 * 3 2 1 31 31 H 1.09003 * 109.47005 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47115 * 270.00402 * 5 4 2 33 33 H 1.09004 * 109.47392 * 30.00446 * 5 4 2 34 34 H 1.08993 * 109.47095 * 150.00535 * 5 4 2 35 35 H 0.97001 * 120.00514 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 37 37 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1902 2.5268 6 6 2.7932 -1.7865 1.0725 7 8 3.0866 -2.2020 -0.0318 8 7 3.2427 -2.4215 2.1730 9 6 4.0846 -3.6130 2.0386 10 6 4.4496 -4.1271 3.4073 11 6 3.6380 -5.0543 4.0353 12 6 3.9699 -5.5278 5.2894 13 6 5.1200 -5.0714 5.9202 14 8 5.4493 -5.5354 7.1527 15 6 4.6824 -6.5210 7.6608 16 1 3.8021 -6.8493 7.1283 17 6 5.0239 -7.1132 8.8672 18 7 6.0966 -6.7138 9.5157 19 14 3.9618 -8.4793 9.5708 20 1 4.4487 -9.7911 9.0733 21 1 4.0390 -8.4525 11.0535 22 1 2.5531 -8.2804 9.1448 23 6 5.9297 -4.1357 5.2897 24 6 5.5952 -3.6703 4.0332 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 2.4157 0.5273 2.8568 33 1 0.6903 0.2974 2.4844 34 1 1.6237 -1.0226 3.2291 35 1 3.0088 -2.0898 3.0540 36 1 4.9927 -3.3565 1.4931 37 1 3.5391 -4.3838 1.4942 38 1 2.7440 -5.4090 3.5440 39 1 3.3360 -6.2521 5.7790 40 1 6.3353 -7.1278 10.3598 41 1 6.8222 -3.7756 5.7796 42 1 6.2267 -2.9460 3.5405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086391686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:01 Heat of formation + Delta-G solvation = -31.758830 kcal Electronic energy + Delta-G solvation = -22613.723609 eV Core-core repulsion = 19173.764571 eV Total energy + Delta-G solvation = -3439.959038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29545 -39.12169 -37.15487 -36.41838 -34.50035 -32.55404 -32.13021 -30.27993 -29.56963 -27.47775 -27.09781 -25.86764 -24.69156 -22.05642 -21.81396 -20.62653 -19.48524 -18.41091 -18.06370 -17.01273 -16.50180 -15.80175 -15.09538 -14.76982 -14.60936 -14.55076 -14.20055 -13.83434 -13.69838 -13.60903 -13.36206 -13.25606 -12.79859 -12.73495 -12.62134 -12.33741 -12.24154 -12.04709 -11.68980 -11.52676 -11.39727 -11.07571 -10.94379 -10.77876 -10.69109 -10.49220 -10.06912 -9.43427 -9.06034 -8.91828 -8.60122 -8.28642 -7.33395 -6.53628 -4.12522 2.02641 2.12783 2.74075 3.08052 3.09319 3.13655 3.23916 3.89785 4.00036 4.51699 4.64098 4.83144 4.86051 5.00705 5.02572 5.15996 5.23253 5.26065 5.28854 5.34158 5.45408 5.45835 5.53386 5.67348 5.69627 5.82706 5.84554 5.97498 5.98725 6.11950 6.35389 6.41368 6.58722 6.63834 6.80360 6.89342 6.98178 7.15325 7.27864 7.34791 7.71200 7.91127 7.98957 8.63411 8.91769 9.60018 10.63943 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.002664 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.337676 B =10507.590723 C =10734.985459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.160 4.160 4 N -0.631 5.631 5 C 0.077 3.923 6 C 0.703 3.297 7 O -0.597 6.597 8 N -0.737 5.737 9 C 0.196 3.804 10 C -0.214 4.214 11 C -0.050 4.050 12 C -0.237 4.237 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.195 4.195 24 C -0.054 4.054 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 12.529 -13.066 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.219 4.219 4 N -0.369 5.369 5 C -0.066 4.066 6 C 0.404 3.596 7 O -0.476 6.476 8 N -0.394 5.394 9 C 0.074 3.926 10 C -0.215 4.215 11 C -0.069 4.069 12 C -0.256 4.256 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.215 4.215 24 C -0.072 4.072 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.073 12.199 -13.471 20.313 hybrid contribution -0.699 -0.525 0.976 1.310 sum -9.772 11.674 -12.495 19.695 Atomic orbital electron populations 1.22165 0.95278 1.02441 1.02128 1.20905 0.93573 0.92653 0.88590 1.22149 1.01803 0.95808 1.02114 1.47112 1.53862 1.29074 1.06882 1.21686 1.01166 0.99931 0.83861 1.15967 0.78880 0.79885 0.84841 1.90881 1.63546 1.68223 1.24982 1.45659 1.55063 1.31103 1.07529 1.19829 0.93469 0.85224 0.94121 1.19233 0.99507 1.05330 0.97456 1.20648 0.97374 0.94921 0.93969 1.21159 1.00244 1.06933 0.97313 1.19441 0.92164 0.92196 0.85627 1.83978 1.51647 1.47556 1.24429 1.21356 1.07542 1.12756 1.05302 0.88925 1.25320 0.96965 0.98459 0.95725 1.70033 1.23587 1.40438 1.15328 0.85694 0.79384 0.79898 0.78367 1.19781 1.20194 1.19145 1.20213 1.01953 1.02978 0.96335 1.20540 0.95453 0.97577 0.93675 0.92401 0.91472 0.92236 0.88026 0.91538 0.92465 0.92275 0.92697 0.90824 0.91325 0.76699 0.91749 0.91805 0.87409 0.85432 0.91876 0.86382 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.17 37.16 0.34 -0.87 16 2 C 0.15 1.39 3.25 -67.93 -0.22 1.17 16 3 C -0.16 -1.20 9.19 37.15 0.34 -0.86 16 4 N -0.63 -6.86 2.76 -179.67 -0.50 -7.36 16 5 C 0.08 0.61 9.26 59.85 0.55 1.16 16 6 C 0.70 10.06 8.28 -86.92 -0.72 9.34 16 7 O -0.60 -10.70 15.67 5.29 0.08 -10.62 16 8 N -0.74 -9.82 5.41 -66.42 -0.36 -10.18 16 9 C 0.20 2.86 5.80 -5.19 -0.03 2.83 16 10 C -0.21 -3.46 5.25 -104.58 -0.55 -4.01 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 12 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 13 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 14 O -0.17 -4.80 9.76 0.05 0.00 -4.79 16 15 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -24.63 13.67 55.48 0.76 -23.88 16 19 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 24 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 25 H 0.06 0.37 6.66 -51.93 -0.35 0.03 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.10 1.19 6.90 -51.93 -0.36 0.83 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 34 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 35 H 0.40 4.71 6.20 -40.82 -0.25 4.46 16 36 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -31.67 348.95 -7.59 -39.26 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.95 Total: 6.65 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.87 Total: -9.30 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.10 Total: -41.41 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.67 -7.59 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086391686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.501 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds