Wall clock time and date at job start Tue Mar 31 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47035 * 2 1 4 4 N 1.46501 * 109.46488 * 120.00188 * 2 1 3 5 5 C 1.46499 * 120.00091 * 299.99633 * 4 2 1 6 6 C 1.34778 * 119.99866 * 120.00606 * 4 2 1 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 4 2 8 8 N 1.34769 * 119.99808 * 179.97438 * 6 4 2 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08997 * 109.47062 * 300.00356 * 1 2 3 26 26 H 1.08998 * 109.46790 * 59.99935 * 1 2 3 27 27 H 1.08996 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47062 * 239.99644 * 2 1 3 29 29 H 1.08998 * 109.47385 * 299.99701 * 3 2 1 30 30 H 1.09001 * 109.47062 * 60.00149 * 3 2 1 31 31 H 1.09003 * 109.47005 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47115 * 270.00402 * 5 4 2 33 33 H 1.09004 * 109.47392 * 30.00446 * 5 4 2 34 34 H 1.08993 * 109.47095 * 150.00535 * 5 4 2 35 35 H 0.97001 * 120.00514 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 37 37 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1902 2.5268 6 6 2.7932 -1.7865 1.0725 7 8 3.0866 -2.2020 -0.0318 8 7 3.2427 -2.4215 2.1730 9 6 4.0846 -3.6130 2.0386 10 6 4.4496 -4.1271 3.4073 11 6 3.6380 -5.0543 4.0353 12 6 3.9699 -5.5278 5.2894 13 6 5.1200 -5.0714 5.9202 14 8 5.4493 -5.5354 7.1527 15 6 4.6824 -6.5210 7.6608 16 1 3.8021 -6.8493 7.1283 17 6 5.0239 -7.1132 8.8672 18 7 6.0966 -6.7138 9.5157 19 14 3.9618 -8.4793 9.5708 20 1 4.4487 -9.7911 9.0733 21 1 4.0390 -8.4525 11.0535 22 1 2.5531 -8.2804 9.1448 23 6 5.9297 -4.1357 5.2897 24 6 5.5952 -3.6703 4.0332 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 2.4157 0.5273 2.8568 33 1 0.6903 0.2974 2.4844 34 1 1.6237 -1.0226 3.2291 35 1 3.0088 -2.0898 3.0540 36 1 4.9927 -3.3565 1.4931 37 1 3.5391 -4.3838 1.4942 38 1 2.7440 -5.4090 3.5440 39 1 3.3360 -6.2521 5.7790 40 1 6.3353 -7.1278 10.3598 41 1 6.8222 -3.7756 5.7796 42 1 6.2267 -2.9460 3.5405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086391686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:01 Heat of formation + Delta-G solvation = -51.697378 kcal Electronic energy + Delta-G solvation = -22614.588209 eV Core-core repulsion = 19173.764571 eV Total energy + Delta-G solvation = -3440.823638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36766 -40.74819 -38.63784 -37.49240 -35.75561 -34.31182 -33.17241 -31.83634 -30.95785 -28.06833 -27.90341 -27.58483 -26.17222 -23.64750 -22.81455 -22.07707 -20.45039 -19.87606 -19.36892 -18.78112 -17.49163 -16.86447 -16.45780 -16.33826 -16.08504 -15.69569 -15.45501 -15.30919 -15.05001 -14.72982 -14.52425 -14.37178 -14.09392 -13.83619 -13.64199 -13.33238 -13.26414 -13.01703 -12.96298 -12.82646 -12.54011 -12.36555 -12.23812 -12.19022 -12.10538 -11.73930 -11.24486 -11.20658 -10.80542 -10.19445 -9.81734 -9.48335 -9.02298 -8.48380 -6.16539 0.52313 0.57385 1.36178 1.44177 1.53098 1.76226 2.14712 2.17191 2.76614 3.04948 3.24098 3.48837 3.86528 3.95673 4.02974 4.17165 4.18754 4.23613 4.37178 4.46006 4.56506 4.64367 4.69784 4.73773 4.76676 4.80651 4.87175 4.96902 5.03464 5.06709 5.14368 5.25771 5.26413 5.37348 5.46906 5.52843 5.64793 5.68682 5.75471 5.99246 6.01371 6.15443 6.96455 6.97590 7.56149 7.75617 8.74456 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.002664 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.337676 B =10507.590723 C =10734.985459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 C -0.153 4.153 4 N -0.627 5.627 5 C 0.071 3.929 6 C 0.697 3.303 7 O -0.638 6.638 8 N -0.731 5.731 9 C 0.203 3.797 10 C -0.182 4.182 11 C -0.045 4.045 12 C -0.243 4.243 13 C 0.124 3.876 14 O -0.228 6.228 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.203 4.203 24 C -0.043 4.043 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 13.828 -14.774 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 C -0.211 4.211 4 N -0.364 5.364 5 C -0.071 4.071 6 C 0.399 3.601 7 O -0.521 6.521 8 N -0.388 5.388 9 C 0.079 3.921 10 C -0.183 4.183 11 C -0.063 4.063 12 C -0.262 4.262 13 C 0.072 3.928 14 O -0.134 6.134 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.223 4.223 24 C -0.061 4.061 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.283 13.559 -15.213 23.293 hybrid contribution -0.066 -0.691 1.146 1.340 sum -11.349 12.867 -14.067 22.186 Atomic orbital electron populations 1.22108 0.93434 1.01952 1.03761 1.21052 0.94975 0.93261 0.87062 1.22088 1.00761 0.94558 1.03694 1.47229 1.52607 1.27942 1.08581 1.21909 1.02713 1.00318 0.82181 1.16127 0.79200 0.80606 0.84193 1.90856 1.65156 1.69576 1.26463 1.45412 1.54853 1.30663 1.07890 1.19705 0.94033 0.85848 0.92483 1.19479 0.98144 1.03172 0.97511 1.20924 0.98369 0.94426 0.92600 1.21237 0.99472 1.06987 0.98483 1.19984 0.93874 0.93529 0.85368 1.83949 1.53332 1.49261 1.26886 1.21835 1.08072 1.13145 1.05913 0.87889 1.26580 0.98416 1.01055 0.95884 1.70176 1.26262 1.42943 1.16287 0.84596 0.77948 0.76256 0.77503 1.18978 1.19655 1.17511 1.20437 1.01763 1.02575 0.97493 1.20865 0.95787 0.97284 0.92180 0.90780 0.89843 0.93748 0.90817 0.89900 0.90950 0.93814 0.91654 0.88605 0.91165 0.75657 0.91365 0.91595 0.84440 0.86112 0.91790 0.86602 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.17 71.98 0.66 -1.23 16 2 C 0.14 2.38 3.25 44.99 0.15 2.53 16 3 C -0.15 -1.90 9.19 71.98 0.66 -1.24 16 4 N -0.63 -12.18 2.76 -840.62 -2.32 -14.50 16 5 C 0.07 0.89 9.26 127.77 1.18 2.07 16 6 C 0.70 18.61 8.28 179.06 1.48 20.09 16 7 O -0.64 -22.21 15.67 -3.98 -0.06 -22.27 16 8 N -0.73 -17.40 5.41 -482.31 -2.61 -20.01 16 9 C 0.20 5.27 5.80 85.63 0.50 5.77 16 10 C -0.18 -5.34 5.25 -19.84 -0.10 -5.45 16 11 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 12 C -0.24 -9.95 9.17 22.39 0.21 -9.75 16 13 C 0.12 5.86 6.65 22.58 0.15 6.01 16 14 O -0.23 -13.30 9.76 -22.72 -0.22 -13.52 16 15 C -0.41 -23.39 9.49 67.92 0.64 -22.75 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 17 C -0.02 -1.19 5.49 84.84 0.47 -0.73 16 18 N -0.92 -55.35 13.67 21.62 0.30 -55.05 16 19 Si 1.02 41.81 29.55 68.60 2.03 43.83 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 23 C -0.20 -8.16 9.99 22.39 0.22 -7.93 16 24 C -0.04 -1.34 9.69 22.25 0.22 -1.12 16 25 H 0.07 0.67 6.66 -2.39 -0.02 0.66 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.68 6.90 -2.39 -0.02 1.67 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.10 0.80 6.43 -2.38 -0.02 0.79 16 34 H 0.07 0.87 6.36 -2.39 -0.02 0.86 16 35 H 0.41 8.31 6.20 -92.71 -0.57 7.74 16 36 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 37 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 38 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 39 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -73.35 348.95 4.21 -69.14 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.46 Total: 27.32 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 6.65 Total: -14.95 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -4.64 Total: -89.56 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.28 Total: -35.79 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -73.35 4.21 -69.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086391686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.446 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds