Wall clock time and date at job start Tue Mar 31 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34712 * 116.99683 * 2 1 4 4 O 1.21464 * 120.00281 * 0.02562 * 3 2 1 5 5 C 1.47724 * 119.99662 * 179.97438 * 3 2 1 6 6 C 1.40076 * 120.56496 * 180.02562 * 5 3 2 7 7 C 1.38334 * 118.28542 * 179.70423 * 6 5 3 8 8 C 1.38369 * 119.30942 * 0.27675 * 7 6 5 9 9 C 1.50701 * 119.45569 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.47030 * 92.73018 * 9 8 7 11 11 C 1.46902 * 111.00067 * 195.54433 * 10 9 8 12 12 C 1.50697 * 109.47394 * 164.62983 * 11 10 9 13 13 H 1.08004 * 119.99479 * 4.99025 * 12 11 10 14 14 C 1.37872 * 120.00388 * 184.98534 * 12 11 10 15 15 N 1.31511 * 120.00360 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99799 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47158 * 89.99765 * 16 14 12 18 18 H 1.48501 * 109.47177 * 209.99758 * 16 14 12 19 19 H 1.48504 * 109.47056 * 330.00006 * 16 14 12 20 20 C 1.46894 * 111.00047 * 71.58892 * 10 9 8 21 21 C 1.52997 * 109.47501 * 271.96797 * 20 10 9 22 22 C 1.52996 * 109.47345 * 31.97109 * 20 10 9 23 23 N 1.31929 * 121.08922 * 359.97438 * 8 7 6 24 24 C 1.31685 * 121.88575 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47170 * 299.99554 * 1 2 3 27 27 H 1.09007 * 109.47456 * 59.99363 * 1 2 3 28 28 H 1.07998 * 120.85638 * 359.97438 * 6 5 3 29 29 H 1.08003 * 120.34725 * 180.24979 * 7 6 5 30 30 H 1.09001 * 109.46805 * 212.73049 * 9 8 7 31 31 H 1.09005 * 109.46825 * 332.72962 * 9 8 7 32 32 H 1.08998 * 109.46871 * 284.63635 * 11 10 9 33 33 H 1.09000 * 109.46863 * 44.63264 * 11 10 9 34 34 H 0.97003 * 120.00435 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.47226 * 151.97039 * 20 10 9 36 36 H 1.09006 * 109.46935 * 65.38260 * 21 20 10 37 37 H 1.08997 * 109.47740 * 185.38240 * 21 20 10 38 38 H 1.09001 * 109.47613 * 305.38639 * 21 20 10 39 39 H 1.09007 * 109.47366 * 63.29525 * 22 20 10 40 40 H 1.08995 * 109.47602 * 183.29819 * 22 20 10 41 41 H 1.09001 * 109.47037 * 303.30163 * 22 20 10 42 42 H 1.08002 * 119.72150 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.1870 2.5194 0.0011 7 6 5.5702 2.5368 0.0079 8 6 6.2627 1.3388 0.0081 9 6 7.7696 1.3539 0.0161 10 7 8.2525 1.2888 1.4019 11 6 9.6696 1.6673 1.4838 12 6 10.0303 1.9559 2.9182 13 1 9.3053 1.7897 3.7013 14 6 11.2859 2.4320 3.2310 15 7 11.6009 2.6834 4.4829 16 14 12.5397 2.7200 1.8765 17 1 12.4106 4.1099 1.3699 18 1 13.9077 2.5151 2.4166 19 1 12.2974 1.7639 0.7663 20 6 8.0300 -0.0453 1.9748 21 6 6.6360 -0.1048 2.6026 22 6 8.1374 -1.0990 0.8707 23 7 5.6255 0.1836 0.0024 24 6 4.3104 0.1146 -0.0042 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8900 28 1 3.6214 3.4394 0.0007 29 1 6.1041 3.4756 0.0126 30 1 8.1444 0.4947 -0.5401 31 1 8.1262 2.2724 -0.4503 32 1 10.2862 0.8492 1.1116 33 1 9.8434 2.5575 0.8793 34 1 12.4841 3.0187 4.7029 35 1 8.7814 -0.2424 2.7395 36 1 5.8815 -0.0029 1.8224 37 1 6.5066 -1.0604 3.1105 38 1 6.5265 0.7068 3.3220 39 1 9.1484 -1.0966 0.4632 40 1 7.9146 -2.0825 1.2841 41 1 7.4257 -0.8683 0.0779 42 1 3.8249 -0.8501 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094761621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:00 Heat of formation + Delta-G solvation = -20.738937 kcal Electronic energy + Delta-G solvation = -23602.617431 eV Core-core repulsion = 20163.136251 eV Total energy + Delta-G solvation = -3439.481179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.05674 -40.04527 -37.62431 -36.67459 -33.04822 -32.53135 -32.39942 -30.87476 -28.79769 -27.57375 -26.56108 -25.44694 -23.80070 -22.92640 -21.70886 -21.12407 -18.90041 -18.31920 -17.49325 -16.77843 -16.62258 -16.40456 -15.77854 -15.20371 -14.86088 -14.66568 -14.23073 -13.93499 -13.60047 -13.44938 -13.32637 -12.87218 -12.82000 -12.43375 -12.38230 -12.19345 -11.93374 -11.78982 -11.10015 -11.06771 -11.01295 -10.91017 -10.70546 -10.56678 -10.46492 -10.09309 -9.97489 -9.63898 -9.31985 -9.26519 -9.03354 -8.57303 -7.39962 -6.05556 -4.02711 0.40321 1.16877 2.33191 2.39467 3.26876 3.35060 3.35904 3.65271 4.13074 4.40685 4.52884 4.66376 4.70043 4.80874 4.86283 4.88608 4.92520 5.20201 5.26518 5.29555 5.55907 5.62837 5.70181 5.81985 5.86044 5.93548 6.02573 6.07741 6.14920 6.22926 6.37667 6.45162 6.49215 6.62265 6.73402 6.82990 7.03287 7.05138 7.45233 7.58566 7.82940 7.89809 8.02216 8.64292 9.04611 9.55683 11.07677 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.003487 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.687526 B = 8029.038761 C = 8226.615600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.518 3.482 4 O -0.508 6.508 5 C -0.195 4.195 6 C -0.011 4.011 7 C -0.162 4.162 8 C 0.191 3.809 9 C 0.078 3.922 10 N -0.514 5.514 11 C 0.164 3.836 12 C -0.506 4.506 13 H 0.081 0.919 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.874 3.126 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.084 3.916 21 C -0.150 4.150 22 C -0.189 4.189 23 N -0.473 5.473 24 C 0.156 3.844 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.064 0.936 31 H 0.086 0.914 32 H -0.009 1.009 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 -5.693 -11.901 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.363 3.637 4 O -0.397 6.397 5 C -0.199 4.199 6 C -0.037 4.037 7 C -0.182 4.182 8 C 0.055 3.945 9 C -0.051 4.051 10 N -0.238 5.238 11 C 0.038 3.962 12 C -0.544 4.544 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.701 3.299 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.025 4.025 21 C -0.208 4.208 22 C -0.248 4.248 23 N -0.183 5.183 24 C -0.003 4.003 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.009 0.991 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.616 -5.751 -11.499 21.809 hybrid contribution 0.502 0.517 -0.908 1.160 sum -17.114 -5.234 -12.407 21.777 Atomic orbital electron populations 1.23293 0.75814 1.03850 1.02669 1.86540 1.23683 1.32529 1.84349 1.21014 0.88779 0.81469 0.72455 1.90831 1.66745 1.36047 1.46099 1.20017 0.90004 0.96398 1.13487 1.21678 0.94413 0.97088 0.90475 1.21984 0.93638 1.00401 1.02218 1.21673 0.97403 0.87892 0.87558 1.21323 0.87490 1.02560 0.93722 1.62222 1.21673 1.26582 1.13354 1.20217 0.82679 0.94542 0.98743 1.20997 0.98910 1.43238 0.91281 0.90144 1.24887 0.97986 0.95211 0.95222 1.69890 1.21229 1.45584 1.17186 0.86887 0.81225 0.79018 0.82746 1.20171 1.21250 1.19277 1.21566 0.97770 0.86617 0.96506 1.22178 0.97577 1.00221 1.00797 1.22636 1.01473 0.99323 1.01345 1.67619 1.09252 1.28744 1.12672 1.23153 0.89166 0.97762 0.90187 0.87859 0.91732 0.91829 0.83630 0.83429 0.91785 0.89601 0.99103 0.95823 0.92666 0.89532 0.91678 0.93889 0.92911 0.93878 0.93273 0.89345 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.56 9.84 -40.52 -0.40 -3.95 16 3 C 0.52 6.24 7.91 34.61 0.27 6.51 16 4 O -0.51 -7.18 16.21 -19.24 -0.31 -7.49 16 5 C -0.20 -2.35 5.89 -104.83 -0.62 -2.97 16 6 C -0.01 -0.13 9.72 -38.86 -0.38 -0.51 16 7 C -0.16 -2.07 9.71 -39.50 -0.38 -2.45 16 8 C 0.19 2.73 5.01 -82.50 -0.41 2.32 16 9 C 0.08 1.24 4.86 -4.98 -0.02 1.22 16 10 N -0.51 -10.24 4.31 -229.53 -0.99 -11.23 16 11 C 0.16 3.81 3.72 -4.98 -0.02 3.79 16 12 C -0.51 -14.06 8.90 -34.44 -0.31 -14.36 16 13 H 0.08 2.47 7.93 -52.48 -0.42 2.05 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 16 Si 0.87 21.03 27.37 -169.99 -4.65 16.37 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.18 6.69 56.52 0.38 -5.80 16 20 C 0.08 1.60 2.60 -67.72 -0.18 1.42 16 21 C -0.15 -2.62 9.04 37.16 0.34 -2.29 16 22 C -0.19 -3.10 7.87 37.16 0.29 -2.81 16 23 N -0.47 -6.47 5.55 -9.12 -0.05 -6.52 16 24 C 0.16 1.84 10.20 -17.12 -0.17 1.67 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.15 1.55 7.74 -52.49 -0.41 1.15 16 29 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 30 H 0.06 1.00 5.49 -51.93 -0.29 0.71 16 31 H 0.09 1.26 7.66 -51.93 -0.40 0.86 16 32 H -0.01 -0.21 7.26 -51.93 -0.38 -0.58 16 33 H 0.02 0.54 6.90 -51.93 -0.36 0.18 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 35 H 0.09 1.91 6.97 -51.92 -0.36 1.55 16 36 H 0.06 1.06 3.47 -51.93 -0.18 0.88 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.72 7.87 -51.92 -0.41 0.31 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.36 3.92 -51.93 -0.20 1.16 16 42 H 0.17 1.58 7.62 -52.49 -0.40 1.18 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -31.83 337.65 -7.07 -38.90 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.91 Total: 0.66 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.62 Total: -5.29 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.27 Total: -44.29 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.71 Total: -11.44 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.65 Total: 16.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.83 -7.07 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094761621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.165 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds