Wall clock time and date at job start Tue Mar 31 2020 07:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34712 * 116.99683 * 2 1 4 4 O 1.21464 * 120.00281 * 0.02562 * 3 2 1 5 5 C 1.47724 * 119.99662 * 179.97438 * 3 2 1 6 6 C 1.40076 * 120.56496 * 180.02562 * 5 3 2 7 7 C 1.38334 * 118.28542 * 179.70423 * 6 5 3 8 8 C 1.38369 * 119.30942 * 0.27675 * 7 6 5 9 9 C 1.50701 * 119.45569 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.47030 * 92.73018 * 9 8 7 11 11 C 1.46902 * 111.00067 * 195.54433 * 10 9 8 12 12 C 1.50697 * 109.47394 * 164.62983 * 11 10 9 13 13 H 1.08004 * 119.99479 * 4.99025 * 12 11 10 14 14 C 1.37872 * 120.00388 * 184.98534 * 12 11 10 15 15 N 1.31511 * 120.00360 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99799 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47158 * 89.99765 * 16 14 12 18 18 H 1.48501 * 109.47177 * 209.99758 * 16 14 12 19 19 H 1.48504 * 109.47056 * 330.00006 * 16 14 12 20 20 C 1.46894 * 111.00047 * 71.58892 * 10 9 8 21 21 C 1.52997 * 109.47501 * 271.96797 * 20 10 9 22 22 C 1.52996 * 109.47345 * 31.97109 * 20 10 9 23 23 N 1.31929 * 121.08922 * 359.97438 * 8 7 6 24 24 C 1.31685 * 121.88575 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47170 * 299.99554 * 1 2 3 27 27 H 1.09007 * 109.47456 * 59.99363 * 1 2 3 28 28 H 1.07998 * 120.85638 * 359.97438 * 6 5 3 29 29 H 1.08003 * 120.34725 * 180.24979 * 7 6 5 30 30 H 1.09001 * 109.46805 * 212.73049 * 9 8 7 31 31 H 1.09005 * 109.46825 * 332.72962 * 9 8 7 32 32 H 1.08998 * 109.46871 * 284.63635 * 11 10 9 33 33 H 1.09000 * 109.46863 * 44.63264 * 11 10 9 34 34 H 0.97003 * 120.00435 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.47226 * 151.97039 * 20 10 9 36 36 H 1.09006 * 109.46935 * 65.38260 * 21 20 10 37 37 H 1.08997 * 109.47740 * 185.38240 * 21 20 10 38 38 H 1.09001 * 109.47613 * 305.38639 * 21 20 10 39 39 H 1.09007 * 109.47366 * 63.29525 * 22 20 10 40 40 H 1.08995 * 109.47602 * 183.29819 * 22 20 10 41 41 H 1.09001 * 109.47037 * 303.30163 * 22 20 10 42 42 H 1.08002 * 119.72150 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.1870 2.5194 0.0011 7 6 5.5702 2.5368 0.0079 8 6 6.2627 1.3388 0.0081 9 6 7.7696 1.3539 0.0161 10 7 8.2525 1.2888 1.4019 11 6 9.6696 1.6673 1.4838 12 6 10.0303 1.9559 2.9182 13 1 9.3053 1.7897 3.7013 14 6 11.2859 2.4320 3.2310 15 7 11.6009 2.6834 4.4829 16 14 12.5397 2.7200 1.8765 17 1 12.4106 4.1099 1.3699 18 1 13.9077 2.5151 2.4166 19 1 12.2974 1.7639 0.7663 20 6 8.0300 -0.0453 1.9748 21 6 6.6360 -0.1048 2.6026 22 6 8.1374 -1.0990 0.8707 23 7 5.6255 0.1836 0.0024 24 6 4.3104 0.1146 -0.0042 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8900 28 1 3.6214 3.4394 0.0007 29 1 6.1041 3.4756 0.0126 30 1 8.1444 0.4947 -0.5401 31 1 8.1262 2.2724 -0.4503 32 1 10.2862 0.8492 1.1116 33 1 9.8434 2.5575 0.8793 34 1 12.4841 3.0187 4.7029 35 1 8.7814 -0.2424 2.7395 36 1 5.8815 -0.0029 1.8224 37 1 6.5066 -1.0604 3.1105 38 1 6.5265 0.7068 3.3220 39 1 9.1484 -1.0966 0.4632 40 1 7.9146 -2.0825 1.2841 41 1 7.4257 -0.8683 0.0779 42 1 3.8249 -0.8501 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094761621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:57 Heat of formation + Delta-G solvation = -40.926489 kcal Electronic energy + Delta-G solvation = -23603.492829 eV Core-core repulsion = 20163.136251 eV Total energy + Delta-G solvation = -3440.356577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.02914 -41.02794 -39.02568 -37.55991 -34.91308 -33.74345 -33.56343 -32.42842 -30.09996 -28.57000 -27.98404 -26.81450 -24.78535 -24.01230 -23.54778 -22.13606 -20.37756 -19.22028 -18.86321 -18.40135 -17.50880 -17.42541 -16.93070 -16.59823 -16.26216 -16.05373 -15.52356 -15.13731 -14.76830 -14.64554 -14.42914 -14.24103 -14.13072 -14.01211 -13.58013 -13.26886 -13.16668 -13.03390 -12.82301 -12.50924 -12.21877 -12.15208 -11.91231 -11.87168 -11.84783 -11.83132 -11.51227 -11.42992 -10.75504 -10.72230 -10.35981 -10.11749 -8.95093 -8.24667 -6.27540 -0.58472 0.21481 1.37364 1.37890 1.39869 1.50181 1.60500 2.37533 2.62009 3.08065 3.11686 3.43893 3.62809 3.69949 3.79895 3.99732 4.20576 4.21016 4.31317 4.32307 4.35924 4.52913 4.61087 4.68499 4.73391 4.74432 4.79359 4.89397 4.95407 4.98564 5.02136 5.07504 5.14928 5.22617 5.24998 5.39932 5.51851 5.58566 5.66990 6.05502 6.41412 6.57100 6.67824 6.79032 6.83668 7.35403 8.92440 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.003487 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.687526 B = 8029.038761 C = 8226.615600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.522 3.478 4 O -0.533 6.533 5 C -0.196 4.196 6 C -0.010 4.010 7 C -0.164 4.164 8 C 0.175 3.825 9 C 0.078 3.922 10 N -0.530 5.530 11 C 0.175 3.825 12 C -0.510 4.510 13 H 0.031 0.969 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.949 3.051 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.248 1.248 20 C 0.083 3.917 21 C -0.142 4.142 22 C -0.178 4.178 23 N -0.485 5.485 24 C 0.160 3.840 25 H 0.136 0.864 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.072 0.928 31 H 0.099 0.901 32 H -0.010 1.010 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 -6.407 -14.514 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.368 3.632 4 O -0.424 6.424 5 C -0.200 4.200 6 C -0.035 4.035 7 C -0.184 4.184 8 C 0.040 3.960 9 C -0.050 4.050 10 N -0.254 5.254 11 C 0.048 3.952 12 C -0.549 4.549 13 H 0.050 0.950 14 C -0.191 4.191 15 N -0.593 5.593 16 Si 0.772 3.228 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.171 1.171 20 C -0.026 4.026 21 C -0.199 4.199 22 C -0.236 4.236 23 N -0.195 5.195 24 C 0.002 3.998 25 H 0.154 0.846 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.008 0.992 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.689 -6.489 -14.130 24.312 hybrid contribution 0.628 0.686 -0.025 0.931 sum -18.061 -5.803 -14.156 23.670 Atomic orbital electron populations 1.23624 0.73960 1.06056 1.02714 1.86530 1.25457 1.31245 1.83695 1.20989 0.88694 0.81711 0.71846 1.90823 1.67231 1.36975 1.47420 1.20146 0.90319 0.96587 1.12936 1.21846 0.94197 0.97756 0.89701 1.22089 0.94019 1.00389 1.01891 1.21463 0.96557 0.88773 0.89240 1.21362 0.88795 1.03632 0.91204 1.62073 1.19575 1.27284 1.16464 1.19951 0.84852 0.94879 0.95529 1.21231 0.98121 1.42679 0.92836 0.95036 1.25865 1.00445 0.94929 0.97899 1.70064 1.22047 1.47268 1.19906 0.85697 0.77645 0.79860 0.79616 1.18736 1.21240 1.17106 1.21505 0.97220 0.87365 0.96490 1.22121 0.97231 0.99890 1.00709 1.22530 1.01557 0.98898 1.00608 1.67537 1.10142 1.28565 1.13267 1.23497 0.88454 0.98732 0.89125 0.84616 0.91940 0.91602 0.82516 0.82410 0.91065 0.88239 0.99198 0.94543 0.92559 0.93799 0.89836 0.92565 0.95572 0.94447 0.91986 0.87865 0.79099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.20 9.84 -56.21 -0.55 -6.76 16 3 C 0.52 11.56 7.91 70.33 0.56 12.11 16 4 O -0.53 -14.30 16.21 19.95 0.32 -13.98 16 5 C -0.20 -4.30 5.89 -20.00 -0.12 -4.42 16 6 C -0.01 -0.21 9.72 22.74 0.22 0.01 16 7 C -0.16 -3.89 9.71 22.32 0.22 -3.67 16 8 C 0.18 4.69 5.01 42.58 0.21 4.90 16 9 C 0.08 2.36 4.86 85.56 0.42 2.78 16 10 N -0.53 -21.03 4.31 -880.09 -3.79 -24.82 16 11 C 0.17 8.06 3.72 85.56 0.32 8.38 16 12 C -0.51 -29.35 8.90 25.60 0.23 -29.12 16 13 H 0.03 2.06 7.93 -2.91 -0.02 2.04 16 14 C 0.01 0.31 5.47 84.65 0.46 0.77 16 15 N -0.95 -59.82 13.96 21.44 0.30 -59.52 16 16 Si 0.95 43.28 27.37 68.60 1.88 45.16 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.25 -10.39 6.69 99.48 0.67 -9.73 16 20 C 0.08 3.17 2.60 44.91 0.12 3.29 16 21 C -0.14 -4.96 9.04 71.98 0.65 -4.31 16 22 C -0.18 -5.56 7.87 71.98 0.57 -4.99 16 23 N -0.48 -12.13 5.55 -182.76 -1.02 -13.15 16 24 C 0.16 3.36 10.20 85.04 0.87 4.23 16 25 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.16 3.08 7.74 -2.91 -0.02 3.05 16 29 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.07 2.05 5.49 -2.39 -0.01 2.04 16 31 H 0.10 2.70 7.66 -2.38 -0.02 2.68 16 32 H -0.01 -0.45 7.26 -2.39 -0.02 -0.46 16 33 H 0.04 1.59 6.90 -2.39 -0.02 1.58 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.04 2.03 6.97 -2.38 -0.02 2.02 16 36 H 0.08 2.60 3.47 -2.38 -0.01 2.59 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.20 7.87 -2.38 -0.02 1.18 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.10 2.94 3.92 -2.39 -0.01 2.93 16 42 H 0.19 2.98 7.62 -2.91 -0.02 2.95 16 Total: -1.00 -71.01 337.65 4.04 -66.98 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.98 Total: 14.59 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 5.91 Total: -8.50 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -4.51 Total: -97.49 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.23 Total: -20.74 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -71.01 4.04 -66.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094761621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.052 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds