Wall clock time and date at job start Tue Mar 31 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 6 6 C 1.39666 * 119.99942 * 205.00165 * 5 3 2 7 7 C 1.38973 * 120.04908 * 359.97438 * 6 5 3 8 8 C 1.38115 * 120.03568 * 180.02562 * 7 6 5 9 9 C 1.38214 * 120.12728 * 359.96229 * 8 7 6 10 10 C 1.38773 * 120.09803 * 0.02562 * 9 8 7 11 11 O 1.35890 * 120.02228 * 179.97438 * 10 9 8 12 12 C 1.42906 * 117.00073 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.47223 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46717 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00314 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00197 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99990 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47013 * 89.99483 * 18 16 14 20 20 H 1.48496 * 109.47138 * 209.99438 * 18 16 14 21 21 H 1.48500 * 109.47023 * 329.99936 * 18 16 14 22 22 C 1.38618 * 119.96066 * 359.74339 * 10 9 8 23 23 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 24 24 N 1.34772 * 120.00148 * 60.00144 * 23 3 2 25 25 O 1.21289 * 120.00193 * 240.00120 * 23 3 2 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97003 * 120.00178 * 25.01006 * 5 3 2 32 32 H 1.08000 * 119.98012 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.93161 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.95357 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.46972 * 300.00710 * 12 11 10 36 36 H 1.09005 * 109.46996 * 60.00258 * 12 11 10 37 37 H 1.09004 * 109.46829 * 300.00103 * 13 12 11 38 38 H 1.08995 * 109.47191 * 60.00072 * 13 12 11 39 39 H 0.97007 * 120.00104 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.06962 * 180.27753 * 22 10 9 41 41 H 0.97004 * 120.00098 * 359.97438 * 24 23 3 42 42 H 0.97003 * 120.00250 * 180.02562 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6524 2.0974 1.2518 6 6 1.5210 3.4870 1.3014 7 6 1.7581 4.2494 0.1639 8 6 1.6286 5.6236 0.2133 9 6 1.2623 6.2439 1.3929 10 6 1.0239 5.4878 2.5319 11 8 0.6643 6.0993 3.6909 12 6 0.5511 7.5237 3.6650 13 6 0.1412 8.0280 5.0501 14 6 0.0212 9.5300 5.0225 15 1 0.2181 10.0707 4.1086 16 6 -0.3399 10.2138 6.1640 17 7 -0.4441 11.5245 6.1401 18 14 -0.6798 9.2785 7.7449 19 1 0.5789 9.1454 8.5217 20 1 -1.6834 10.0181 8.5517 21 1 -1.2049 7.9284 7.4182 22 6 1.1481 4.1080 2.4854 23 6 3.5419 1.4443 -0.1239 24 7 4.1297 0.8913 -1.2032 25 8 4.2217 1.9436 0.7478 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.4872 1.5660 2.0464 32 1 2.0439 3.7671 -0.7592 33 1 1.8137 6.2145 -0.6715 34 1 1.1622 7.3187 1.4285 35 1 1.5114 7.9595 3.3895 36 1 -0.2032 7.8149 2.9340 37 1 -0.8191 7.5921 5.3259 38 1 0.8957 7.7368 5.7808 39 1 -0.6978 12.0056 6.9434 40 1 0.9586 3.5175 3.3696 41 1 3.5861 0.4916 -1.9001 42 1 5.0965 0.8921 -1.2827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112532361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:51 Heat of formation + Delta-G solvation = -60.387799 kcal Electronic energy + Delta-G solvation = -22578.607589 eV Core-core repulsion = 19137.407106 eV Total energy + Delta-G solvation = -3441.200483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41137 -39.46782 -37.64045 -35.93316 -34.11164 -33.29483 -32.74094 -31.04472 -29.76133 -28.60954 -27.02533 -25.06595 -23.02245 -22.31462 -21.83160 -20.46102 -20.17555 -18.27855 -17.89821 -17.18743 -16.76180 -16.12183 -15.75399 -15.60636 -15.32400 -14.80927 -14.72010 -14.54308 -14.20055 -13.87766 -13.37777 -13.20825 -12.93574 -12.77978 -12.54401 -12.42527 -11.91191 -11.71394 -11.66718 -11.49835 -11.17751 -10.90234 -10.65548 -10.49559 -10.11349 -10.02607 -9.95471 -9.80397 -9.68063 -9.29248 -8.58340 -7.96557 -7.36421 -6.09510 -4.09937 1.72740 1.86254 2.31527 2.93297 3.31253 3.32198 3.39014 3.45064 3.97296 4.13386 4.22649 4.41108 4.43036 4.50385 4.76722 5.00410 5.08770 5.15367 5.24783 5.31876 5.41166 5.48651 5.55378 5.59831 5.77797 5.78571 6.01617 6.03847 6.09809 6.34612 6.42158 6.50938 6.59678 6.74309 6.85649 6.93573 7.12374 7.29403 7.34966 7.59391 7.68381 7.95252 8.04851 8.43485 8.91726 9.51058 11.03066 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.002693 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.457161 B =10396.199791 C =10692.958986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.138 3.862 4 H 0.108 0.892 5 N -0.722 5.722 6 C 0.254 3.746 7 C -0.240 4.240 8 C -0.036 4.036 9 C -0.261 4.261 10 C 0.187 3.813 11 O -0.320 6.320 12 C 0.074 3.926 13 C -0.009 4.009 14 C -0.525 4.525 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.232 4.232 23 C 0.492 3.508 24 N -0.859 5.859 25 O -0.520 6.520 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.403 0.597 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.023 0.977 39 H 0.265 0.735 40 H 0.125 0.875 41 H 0.399 0.601 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -26.224 -18.248 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.027 3.973 4 H 0.125 0.875 5 N -0.352 5.352 6 C 0.152 3.848 7 C -0.262 4.262 8 C -0.055 4.055 9 C -0.281 4.281 10 C 0.139 3.861 11 O -0.233 6.233 12 C -0.001 4.001 13 C -0.047 4.047 14 C -0.563 4.563 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.707 3.293 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.255 4.255 23 C 0.274 3.726 24 N -0.425 5.425 25 O -0.394 6.394 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.239 0.761 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.227 0.773 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.430 -25.785 -17.416 31.430 hybrid contribution 0.114 -0.502 0.531 0.740 sum 4.544 -26.287 -16.885 31.572 Atomic orbital electron populations 1.21767 0.93990 1.02125 1.03048 1.21759 0.97709 0.93408 1.03506 1.20843 0.90423 0.95530 0.90482 0.87478 1.44114 1.76290 1.03481 1.11356 1.17249 0.91731 0.82788 0.93003 1.20310 1.14656 0.94050 0.97186 1.20594 0.94451 0.93604 0.96853 1.21155 1.12846 1.00550 0.93568 1.18751 0.90405 0.91467 0.85474 1.86092 1.82073 1.24480 1.30652 1.23061 1.00446 0.74848 1.01695 1.19589 0.97222 0.96916 0.90956 1.20855 1.47864 0.88819 0.98761 0.90728 1.24934 0.94469 0.94754 0.98892 1.69895 1.47928 1.06643 1.29228 0.86755 0.78560 0.80603 0.83345 1.20075 1.21226 1.18731 1.19608 1.15804 0.92241 0.97842 1.21629 0.91993 0.77336 0.81647 1.43959 1.11483 1.62997 1.24017 1.90804 1.65332 1.43440 1.39811 0.91752 0.92167 0.92220 0.90767 0.90171 0.76146 0.87283 0.86307 0.85417 0.92497 0.92456 0.95452 0.95871 0.92495 0.85738 0.77287 0.76932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.80 37.16 0.36 -0.34 16 2 C -0.13 -0.55 5.42 -26.73 -0.14 -0.70 16 3 C 0.14 1.01 2.08 -69.08 -0.14 0.87 16 4 H 0.11 0.69 6.48 -51.93 -0.34 0.35 16 5 N -0.72 -7.44 4.21 -53.30 -0.22 -7.66 16 6 C 0.25 3.49 6.55 -83.81 -0.55 2.95 16 7 C -0.24 -3.21 9.15 -39.35 -0.36 -3.57 16 8 C -0.04 -0.52 10.03 -39.64 -0.40 -0.91 16 9 C -0.26 -4.36 9.04 -39.39 -0.36 -4.72 16 10 C 0.19 3.41 6.68 -39.24 -0.26 3.15 16 11 O -0.32 -6.65 10.13 -19.39 -0.20 -6.84 16 12 C 0.07 1.59 4.68 37.16 0.17 1.76 16 13 C -0.01 -0.23 4.41 -27.88 -0.12 -0.36 16 14 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 18 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 22 C -0.23 -3.72 9.83 -39.23 -0.39 -4.11 16 23 C 0.49 4.55 7.35 -10.99 -0.08 4.47 16 24 N -0.86 -4.15 8.74 31.22 0.27 -3.87 16 25 O -0.52 -7.74 17.20 5.55 0.10 -7.65 16 26 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.17 7.43 -51.93 -0.39 -0.22 16 31 H 0.40 3.75 8.61 -40.82 -0.35 3.40 16 32 H 0.11 1.20 6.19 -52.49 -0.32 0.88 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.13 2.12 6.29 -52.49 -0.33 1.79 16 35 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 36 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 37 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 38 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.40 0.56 8.19 -40.82 -0.33 0.22 16 42 H 0.40 1.79 8.93 -40.82 -0.36 1.43 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -35.80 349.41 -7.47 -43.27 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.09 Total: 2.05 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.70 Total: -14.95 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.82 Total: -38.47 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.10 Total: -14.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.80 -7.47 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112532361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.122 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds