Wall clock time and date at job start Tue Mar 31 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 6 6 C 1.39666 * 119.99942 * 205.00165 * 5 3 2 7 7 C 1.38973 * 120.04908 * 359.97438 * 6 5 3 8 8 C 1.38115 * 120.03568 * 180.02562 * 7 6 5 9 9 C 1.38214 * 120.12728 * 359.96229 * 8 7 6 10 10 C 1.38773 * 120.09803 * 0.02562 * 9 8 7 11 11 O 1.35890 * 120.02228 * 179.97438 * 10 9 8 12 12 C 1.42906 * 117.00073 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.47223 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46717 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00314 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00197 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99990 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47013 * 89.99483 * 18 16 14 20 20 H 1.48496 * 109.47138 * 209.99438 * 18 16 14 21 21 H 1.48500 * 109.47023 * 329.99936 * 18 16 14 22 22 C 1.38618 * 119.96066 * 359.74339 * 10 9 8 23 23 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 24 24 N 1.34772 * 120.00148 * 60.00144 * 23 3 2 25 25 O 1.21289 * 120.00193 * 240.00120 * 23 3 2 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97003 * 120.00178 * 25.01006 * 5 3 2 32 32 H 1.08000 * 119.98012 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.93161 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.95357 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.46972 * 300.00710 * 12 11 10 36 36 H 1.09005 * 109.46996 * 60.00258 * 12 11 10 37 37 H 1.09004 * 109.46829 * 300.00103 * 13 12 11 38 38 H 1.08995 * 109.47191 * 60.00072 * 13 12 11 39 39 H 0.97007 * 120.00104 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.06962 * 180.27753 * 22 10 9 41 41 H 0.97004 * 120.00098 * 359.97438 * 24 23 3 42 42 H 0.97003 * 120.00250 * 180.02562 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6524 2.0974 1.2518 6 6 1.5210 3.4870 1.3014 7 6 1.7581 4.2494 0.1639 8 6 1.6286 5.6236 0.2133 9 6 1.2623 6.2439 1.3929 10 6 1.0239 5.4878 2.5319 11 8 0.6643 6.0993 3.6909 12 6 0.5511 7.5237 3.6650 13 6 0.1412 8.0280 5.0501 14 6 0.0212 9.5300 5.0225 15 1 0.2181 10.0707 4.1086 16 6 -0.3399 10.2138 6.1640 17 7 -0.4441 11.5245 6.1401 18 14 -0.6798 9.2785 7.7449 19 1 0.5789 9.1454 8.5217 20 1 -1.6834 10.0181 8.5517 21 1 -1.2049 7.9284 7.4182 22 6 1.1481 4.1080 2.4854 23 6 3.5419 1.4443 -0.1239 24 7 4.1297 0.8913 -1.2032 25 8 4.2217 1.9436 0.7478 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.4872 1.5660 2.0464 32 1 2.0439 3.7671 -0.7592 33 1 1.8137 6.2145 -0.6715 34 1 1.1622 7.3187 1.4285 35 1 1.5114 7.9595 3.3895 36 1 -0.2032 7.8149 2.9340 37 1 -0.8191 7.5921 5.3259 38 1 0.8957 7.7368 5.7808 39 1 -0.6978 12.0056 6.9434 40 1 0.9586 3.5175 3.3696 41 1 3.5861 0.4916 -1.9001 42 1 5.0965 0.8921 -1.2827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112532361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:48 Heat of formation + Delta-G solvation = -87.294523 kcal Electronic energy + Delta-G solvation = -22579.774352 eV Core-core repulsion = 19137.407106 eV Total energy + Delta-G solvation = -3442.367246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -41.32189 -40.61945 -38.83500 -36.79501 -35.41379 -34.78576 -33.45437 -32.91842 -31.04658 -29.63421 -27.86271 -26.90542 -23.92601 -23.37418 -22.95284 -21.97482 -21.06215 -19.59142 -18.73854 -18.51955 -17.83141 -17.19112 -16.96539 -16.93751 -16.64561 -16.26344 -15.81743 -15.46136 -15.21455 -14.83239 -14.60945 -14.49751 -14.36562 -14.08940 -13.67788 -13.31889 -13.29510 -12.98291 -12.68718 -12.54120 -12.31077 -12.08089 -11.97764 -11.80978 -11.78792 -11.70151 -11.42332 -11.32930 -10.82076 -10.66386 -10.61772 -9.24668 -8.40307 -8.35345 -6.42014 0.55293 0.66718 1.35788 1.36642 1.50043 1.63343 2.06961 2.32986 2.51161 2.74913 2.98607 2.99435 3.74052 3.92868 3.96134 4.02734 4.21673 4.23272 4.27687 4.31692 4.37178 4.49296 4.59458 4.64694 4.68039 4.81007 4.92776 5.10189 5.11270 5.16428 5.27092 5.29759 5.44931 5.47897 5.49211 5.60811 5.68546 5.92376 6.15908 6.27720 6.50732 6.58101 6.63253 6.73432 7.23006 7.39227 8.80443 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.002693 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.457161 B =10396.199791 C =10692.958986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.135 3.865 4 H 0.125 0.875 5 N -0.716 5.716 6 C 0.260 3.740 7 C -0.236 4.236 8 C -0.034 4.034 9 C -0.282 4.282 10 C 0.154 3.846 11 O -0.336 6.336 12 C 0.088 3.912 13 C -0.006 4.006 14 C -0.537 4.537 15 H 0.042 0.958 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.949 3.051 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.251 1.251 22 C -0.247 4.247 23 C 0.490 3.510 24 N -0.835 5.835 25 O -0.585 6.585 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.406 0.594 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.025 0.975 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.419 0.581 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 -29.428 -19.860 35.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.025 3.975 4 H 0.143 0.857 5 N -0.344 5.344 6 C 0.156 3.844 7 C -0.258 4.258 8 C -0.053 4.053 9 C -0.303 4.303 10 C 0.108 3.892 11 O -0.250 6.250 12 C 0.014 3.986 13 C -0.043 4.043 14 C -0.575 4.575 15 H 0.060 0.940 16 C -0.184 4.184 17 N -0.582 5.582 18 Si 0.772 3.228 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.175 1.175 22 C -0.271 4.271 23 C 0.273 3.727 24 N -0.400 5.400 25 O -0.464 6.464 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.243 0.757 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.251 0.749 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.518 -29.072 -19.112 35.084 hybrid contribution 0.150 0.358 0.814 0.902 sum 4.669 -28.714 -18.298 34.367 Atomic orbital electron populations 1.21762 0.94013 1.02690 1.02429 1.21774 0.97487 0.91342 1.04898 1.21163 0.89460 0.97359 0.89483 0.85734 1.44281 1.75046 1.02246 1.12875 1.17367 0.90332 0.84439 0.92310 1.20671 1.13247 0.93812 0.98099 1.20930 0.93166 0.94389 0.96795 1.21213 1.14444 1.00256 0.94349 1.19064 0.92588 0.92415 0.85172 1.86000 1.83243 1.23328 1.32455 1.22656 1.00294 0.76027 0.99649 1.19447 0.97314 0.94499 0.93065 1.21105 1.47700 0.90868 0.97792 0.93994 1.25877 0.94135 0.95649 1.02773 1.70024 1.49088 1.08438 1.30613 0.85672 0.78937 0.79588 0.78597 1.19056 1.20231 1.17458 1.19755 1.16667 0.91550 0.99084 1.21904 0.92487 0.76654 0.81616 1.43771 1.12073 1.61099 1.23095 1.90792 1.66634 1.46665 1.42282 0.93541 0.91069 0.91678 0.91175 0.86969 0.75747 0.84329 0.83487 0.86258 0.92721 0.92294 0.95319 0.95693 0.92056 0.85555 0.74909 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.80 71.98 0.71 -0.25 16 2 C -0.12 -0.62 5.42 30.59 0.17 -0.46 16 3 C 0.13 1.57 2.08 44.24 0.09 1.67 16 4 H 0.13 1.06 6.48 -2.39 -0.02 1.05 16 5 N -0.72 -13.53 4.21 -322.56 -1.36 -14.89 16 6 C 0.26 6.83 6.55 38.20 0.25 7.08 16 7 C -0.24 -5.80 9.15 22.42 0.21 -5.59 16 8 C -0.03 -0.92 10.03 22.23 0.22 -0.70 16 9 C -0.28 -9.56 9.04 22.39 0.20 -9.36 16 10 C 0.15 5.75 6.68 22.49 0.15 5.90 16 11 O -0.34 -14.35 10.13 -92.31 -0.94 -15.29 16 12 C 0.09 3.94 4.68 71.98 0.34 4.28 16 13 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 14 C -0.54 -31.82 9.66 25.60 0.25 -31.58 16 15 H 0.04 2.68 7.99 -2.91 -0.02 2.65 16 16 C 0.01 0.82 5.47 84.66 0.46 1.28 16 17 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 18 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 22 C -0.25 -7.98 9.83 22.50 0.22 -7.76 16 23 C 0.49 7.83 7.35 87.66 0.64 8.48 16 24 N -0.84 -5.24 8.74 -173.53 -1.52 -6.76 16 25 O -0.58 -16.79 17.20 -3.06 -0.05 -16.84 16 26 H 0.05 0.47 7.75 -2.39 -0.02 0.45 16 27 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 -0.08 7.43 -2.39 -0.02 -0.10 16 31 H 0.41 7.10 8.61 -92.71 -0.80 6.30 16 32 H 0.14 2.52 6.19 -2.91 -0.02 2.51 16 33 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.12 4.12 6.29 -2.91 -0.02 4.10 16 35 H 0.05 2.41 7.66 -2.39 -0.02 2.39 16 36 H 0.06 2.55 7.66 -2.38 -0.02 2.54 16 37 H 0.03 1.43 7.20 -2.38 -0.02 1.42 16 38 H 0.02 1.24 7.57 -2.39 -0.02 1.23 16 39 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 40 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.42 -0.69 8.19 -92.70 -0.76 -1.45 16 42 H 0.40 2.47 8.93 -92.71 -0.83 1.65 16 Total: -1.00 -80.32 349.41 0.98 -79.34 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -1.38 Total: 13.35 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 4.04 Total: -27.16 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.58 Total: -80.69 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.99 Total: -32.13 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -80.32 0.98 -79.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112532361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.955 kcal (2) G-P(sol) polarization free energy of solvation -80.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds