Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00550 * 2 1 4 4 C 1.52995 * 109.47342 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47162 * 60.00198 * 4 3 2 6 6 C 1.53005 * 109.47103 * 300.00073 * 4 3 2 7 7 N 1.46500 * 109.46898 * 180.02562 * 4 3 2 8 8 C 1.34787 * 119.99847 * 179.97438 * 7 4 3 9 9 O 1.21576 * 119.99880 * 0.02562 * 8 7 4 10 10 N 1.34771 * 119.99713 * 180.02562 * 8 7 4 11 11 C 1.39242 * 119.99554 * 184.29420 * 10 8 7 12 12 C 1.39483 * 119.83450 * 324.70061 * 11 10 8 13 13 C 1.36374 * 120.16935 * 180.26053 * 12 11 10 14 14 C 1.40865 * 119.82738 * 359.49718 * 13 12 11 15 15 C 1.41159 * 120.16406 * 180.23468 * 14 13 12 16 16 H 1.08002 * 120.00173 * 215.04368 * 15 14 13 17 17 C 1.39897 * 120.00121 * 35.03407 * 15 14 13 18 18 N 1.30874 * 119.99674 * 355.54985 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 175.54594 * 17 15 14 20 20 H 1.48499 * 109.47076 * 90.00602 * 19 17 15 21 21 H 1.48506 * 109.46778 * 210.00445 * 19 17 15 22 22 H 1.48496 * 109.47072 * 330.00160 * 19 17 15 23 23 C 1.40874 * 119.67483 * 0.52187 * 14 13 12 24 24 C 1.36371 * 119.82530 * 359.73229 * 23 14 13 25 25 H 1.09001 * 109.46875 * 300.00053 * 1 2 3 26 26 H 1.08998 * 109.47032 * 59.99431 * 1 2 3 27 27 H 1.08997 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46907 * 60.00098 * 3 2 1 29 29 H 1.09002 * 109.47251 * 300.00435 * 3 2 1 30 30 H 1.09002 * 109.47148 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47177 * 299.99740 * 5 4 3 32 32 H 1.08996 * 109.47295 * 60.00049 * 5 4 3 33 33 H 1.08999 * 109.46931 * 300.00025 * 6 4 3 34 34 H 1.08990 * 109.47054 * 60.00045 * 6 4 3 35 35 H 1.09001 * 109.46847 * 180.02562 * 6 4 3 36 36 H 0.96993 * 120.00281 * 0.02562 * 7 4 3 37 37 H 0.96998 * 120.00555 * 4.28661 * 10 8 7 38 38 H 1.08004 * 119.91370 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.08477 * 179.74896 * 13 12 11 40 40 H 0.97003 * 120.00124 * 179.97438 * 18 17 15 41 41 H 1.07995 * 120.08758 * 179.70836 * 23 14 13 42 42 H 1.07996 * 119.91567 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2502 6 6 3.9874 0.4249 1.2483 7 7 4.1314 2.5228 0.0000 8 6 5.4719 2.6636 0.0001 9 8 6.1864 1.6800 -0.0008 10 7 6.0200 3.8948 0.0012 11 6 7.4017 4.0417 -0.0890 12 6 8.2400 3.1115 0.5254 13 6 9.5942 3.2517 0.4459 14 6 10.1459 4.3336 -0.2679 15 6 11.5466 4.4828 -0.3590 16 1 11.9853 5.4697 -0.3662 17 6 12.3668 3.3523 -0.4395 18 7 11.8439 2.1564 -0.3429 19 14 14.2080 3.5497 -0.6851 20 1 14.8775 3.6347 0.6377 21 1 14.7358 2.3802 -1.4328 22 1 14.4743 4.7910 -1.4554 23 6 9.2929 5.2692 -0.8855 24 6 7.9406 5.1187 -0.7928 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 5.0730 0.3389 -1.2505 31 1 3.5430 -0.5703 -1.2503 32 1 3.6645 0.9665 -2.1400 33 1 3.6662 0.9657 2.1385 34 1 3.5441 -0.5707 1.2483 35 1 5.0741 0.3392 1.2480 36 1 3.5613 3.3075 0.0011 37 1 5.4521 4.6786 0.0647 38 1 7.8155 2.2806 1.0694 39 1 10.2420 2.5329 0.9256 40 1 12.4125 1.3725 -0.3991 41 1 9.7086 6.1038 -1.4304 42 1 7.2853 5.8354 -1.2653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118796888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -49.579327 kcal Electronic energy + Delta-G solvation = -23190.345894 eV Core-core repulsion = 19749.614101 eV Total energy + Delta-G solvation = -3440.731793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24185 -38.57032 -37.41830 -35.67881 -34.23400 -32.96805 -31.25129 -29.41423 -28.61746 -27.65498 -27.08625 -25.85274 -24.78434 -21.89646 -21.14345 -20.11457 -19.53177 -17.99345 -17.22376 -16.91626 -16.34471 -16.10994 -15.27495 -15.16712 -14.82174 -14.47091 -13.97672 -13.86446 -13.68223 -13.15268 -13.00564 -12.64281 -12.24028 -12.11891 -11.94621 -11.76035 -11.74772 -11.54494 -11.37850 -11.17420 -11.06120 -10.87605 -10.78381 -10.43107 -9.98759 -9.85082 -9.80306 -9.41140 -9.01062 -8.84053 -8.66860 -7.44646 -6.79545 -6.52546 -4.26175 2.69746 2.86230 3.11291 3.14713 3.16319 3.23081 3.72220 3.78724 4.04165 4.52771 4.73539 4.75887 4.80095 4.98799 5.03339 5.03703 5.29800 5.34732 5.50436 5.72106 5.87771 5.96759 6.00268 6.08243 6.18911 6.44343 6.49847 6.56605 6.70504 6.86521 6.87730 6.95108 7.11693 7.22530 7.35504 7.45964 7.72087 7.90374 8.10018 8.16411 8.37138 8.54937 8.74851 9.00469 9.01749 9.18819 10.38584 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.003000 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.910381 B = 9331.010738 C = 9823.559717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.063 3.937 4 C 0.197 3.803 5 C -0.159 4.159 6 C -0.159 4.159 7 N -0.747 5.747 8 C 0.700 3.300 9 O -0.565 6.565 10 N -0.670 5.670 11 C 0.027 3.973 12 C -0.093 4.093 13 C -0.143 4.143 14 C 0.098 3.902 15 C -0.465 4.465 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.809 5.809 19 Si 0.914 3.086 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.204 4.204 24 C -0.117 4.117 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.389 0.611 37 H 0.390 0.610 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.277 0.723 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 -0.755 1.127 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.014 4.014 4 C 0.111 3.889 5 C -0.217 4.217 6 C -0.217 4.217 7 N -0.405 5.405 8 C 0.401 3.599 9 O -0.441 6.441 10 N -0.316 5.316 11 C -0.066 4.066 12 C -0.114 4.114 13 C -0.163 4.163 14 C 0.095 3.905 15 C -0.496 4.496 16 H 0.092 0.908 17 C -0.146 4.146 18 N -0.436 5.436 19 Si 0.739 3.261 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.224 4.224 24 C -0.138 4.138 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.221 0.779 37 H 0.222 0.778 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.297 -2.125 1.106 18.453 hybrid contribution -0.125 1.101 -0.279 1.143 sum -18.422 -1.024 0.827 18.469 Atomic orbital electron populations 1.22759 0.80890 1.02891 0.99942 1.87876 1.19571 1.26837 1.95378 1.22606 0.93144 0.85270 1.00408 1.19857 0.89461 0.82181 0.97417 1.22187 1.04408 0.99807 0.95344 1.22187 1.04342 0.99862 0.95343 1.45142 1.05427 1.07848 1.82088 1.15897 0.81350 0.84347 0.78312 1.90877 1.59811 1.37121 1.56311 1.42136 1.06856 1.05822 1.76755 1.17081 0.79617 1.01378 1.08532 1.20674 0.93690 0.97826 0.99161 1.21306 0.92863 1.00969 1.01159 1.17715 0.93260 0.90934 0.88560 1.19449 0.91300 0.93489 1.45318 0.90768 1.25874 1.00879 0.94852 0.93015 1.69794 1.37126 0.98681 1.37981 0.86227 0.82098 0.78743 0.79036 1.19592 1.20357 1.18837 1.20669 0.92196 1.03282 1.06220 1.20045 0.95292 0.98114 1.00337 0.94083 0.94070 0.89438 0.92875 0.92871 0.89687 0.91483 0.93326 0.93330 0.91459 0.89734 0.77856 0.77770 0.87266 0.85270 0.91162 0.88636 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.89 9.35 -35.23 -0.33 -4.22 16 3 C 0.06 0.60 4.92 37.15 0.18 0.79 16 4 C 0.20 2.48 0.89 -131.82 -0.12 2.37 16 5 C -0.16 -2.24 8.26 37.16 0.31 -1.93 16 6 C -0.16 -2.18 8.25 37.16 0.31 -1.88 16 7 N -0.75 -9.61 5.11 -52.42 -0.27 -9.88 16 8 C 0.70 12.42 7.81 -86.91 -0.68 11.74 16 9 O -0.57 -12.38 9.96 5.30 0.05 -12.32 16 10 N -0.67 -11.75 5.31 -14.10 -0.07 -11.83 16 11 C 0.03 0.59 6.31 -83.57 -0.53 0.07 16 12 C -0.09 -2.35 8.61 -39.79 -0.34 -2.69 16 13 C -0.14 -3.89 8.61 -39.26 -0.34 -4.22 16 14 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 15 C -0.46 -12.58 9.02 -37.85 -0.34 -12.92 16 16 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 17 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 18 N -0.81 -21.95 10.61 55.55 0.59 -21.36 16 19 Si 0.91 19.45 29.56 -169.99 -5.03 14.43 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.20 -4.98 9.74 -39.26 -0.38 -5.36 16 24 C -0.12 -2.58 9.90 -39.79 -0.39 -2.98 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.49 6.17 -51.93 -0.32 1.17 16 31 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 7.68 -51.93 -0.40 0.47 16 35 H 0.08 1.43 6.16 -51.93 -0.32 1.11 16 36 H 0.39 3.64 8.49 -40.82 -0.35 3.29 16 37 H 0.39 5.24 8.83 -40.82 -0.36 4.88 16 38 H 0.11 2.77 6.22 -52.48 -0.33 2.45 16 39 H 0.13 3.68 6.15 -52.49 -0.32 3.36 16 40 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -31.40 342.17 -7.94 -39.34 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.15 Total: 12.61 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.90 Total: -11.93 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.25 Total: -43.07 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.28 Total: -16.54 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.40 -7.94 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118796888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.236 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds