Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00550 * 2 1 4 4 C 1.52995 * 109.47342 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47162 * 60.00198 * 4 3 2 6 6 C 1.53005 * 109.47103 * 300.00073 * 4 3 2 7 7 N 1.46500 * 109.46898 * 180.02562 * 4 3 2 8 8 C 1.34787 * 119.99847 * 179.97438 * 7 4 3 9 9 O 1.21576 * 119.99880 * 0.02562 * 8 7 4 10 10 N 1.34771 * 119.99713 * 180.02562 * 8 7 4 11 11 C 1.39242 * 119.99554 * 184.29420 * 10 8 7 12 12 C 1.39483 * 119.83450 * 324.70061 * 11 10 8 13 13 C 1.36374 * 120.16935 * 180.26053 * 12 11 10 14 14 C 1.40865 * 119.82738 * 359.49718 * 13 12 11 15 15 C 1.41159 * 120.16406 * 180.23468 * 14 13 12 16 16 H 1.08002 * 120.00173 * 215.04368 * 15 14 13 17 17 C 1.39897 * 120.00121 * 35.03407 * 15 14 13 18 18 N 1.30874 * 119.99674 * 355.54985 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 175.54594 * 17 15 14 20 20 H 1.48499 * 109.47076 * 90.00602 * 19 17 15 21 21 H 1.48506 * 109.46778 * 210.00445 * 19 17 15 22 22 H 1.48496 * 109.47072 * 330.00160 * 19 17 15 23 23 C 1.40874 * 119.67483 * 0.52187 * 14 13 12 24 24 C 1.36371 * 119.82530 * 359.73229 * 23 14 13 25 25 H 1.09001 * 109.46875 * 300.00053 * 1 2 3 26 26 H 1.08998 * 109.47032 * 59.99431 * 1 2 3 27 27 H 1.08997 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46907 * 60.00098 * 3 2 1 29 29 H 1.09002 * 109.47251 * 300.00435 * 3 2 1 30 30 H 1.09002 * 109.47148 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47177 * 299.99740 * 5 4 3 32 32 H 1.08996 * 109.47295 * 60.00049 * 5 4 3 33 33 H 1.08999 * 109.46931 * 300.00025 * 6 4 3 34 34 H 1.08990 * 109.47054 * 60.00045 * 6 4 3 35 35 H 1.09001 * 109.46847 * 180.02562 * 6 4 3 36 36 H 0.96993 * 120.00281 * 0.02562 * 7 4 3 37 37 H 0.96998 * 120.00555 * 4.28661 * 10 8 7 38 38 H 1.08004 * 119.91370 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.08477 * 179.74896 * 13 12 11 40 40 H 0.97003 * 120.00124 * 179.97438 * 18 17 15 41 41 H 1.07995 * 120.08758 * 179.70836 * 23 14 13 42 42 H 1.07996 * 119.91567 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2502 6 6 3.9874 0.4249 1.2483 7 7 4.1314 2.5228 0.0000 8 6 5.4719 2.6636 0.0001 9 8 6.1864 1.6800 -0.0008 10 7 6.0200 3.8948 0.0012 11 6 7.4017 4.0417 -0.0890 12 6 8.2400 3.1115 0.5254 13 6 9.5942 3.2517 0.4459 14 6 10.1459 4.3336 -0.2679 15 6 11.5466 4.4828 -0.3590 16 1 11.9853 5.4697 -0.3662 17 6 12.3668 3.3523 -0.4395 18 7 11.8439 2.1564 -0.3429 19 14 14.2080 3.5497 -0.6851 20 1 14.8775 3.6347 0.6377 21 1 14.7358 2.3802 -1.4328 22 1 14.4743 4.7910 -1.4554 23 6 9.2929 5.2692 -0.8855 24 6 7.9406 5.1187 -0.7928 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 5.0730 0.3389 -1.2505 31 1 3.5430 -0.5703 -1.2503 32 1 3.6645 0.9665 -2.1400 33 1 3.6662 0.9657 2.1385 34 1 3.5441 -0.5707 1.2483 35 1 5.0741 0.3392 1.2480 36 1 3.5613 3.3075 0.0011 37 1 5.4521 4.6786 0.0647 38 1 7.8155 2.2806 1.0694 39 1 10.2420 2.5329 0.9256 40 1 12.4125 1.3725 -0.3991 41 1 9.7086 6.1038 -1.4304 42 1 7.2853 5.8354 -1.2653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118796888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -70.966951 kcal Electronic energy + Delta-G solvation = -23191.273331 eV Core-core repulsion = 19749.614101 eV Total energy + Delta-G solvation = -3441.659229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.62490 -39.76273 -38.85819 -36.91989 -35.91543 -34.74685 -32.58079 -31.34640 -30.41936 -28.36437 -28.22119 -26.88083 -26.33416 -23.49243 -22.98572 -21.72710 -20.76314 -19.38649 -19.18008 -18.17892 -17.42833 -16.99149 -16.78206 -16.28569 -16.27114 -15.78784 -15.63257 -15.15521 -14.86373 -14.57503 -14.46996 -14.16897 -13.93347 -13.65007 -13.25810 -13.10167 -13.04720 -12.85134 -12.72124 -12.58446 -12.47245 -12.27347 -12.17915 -11.83773 -11.67471 -11.62794 -11.14253 -10.74990 -10.62311 -10.42939 -10.09705 -9.39616 -8.65925 -8.45826 -6.28466 0.90737 1.17981 1.39551 1.47668 1.54896 1.65067 2.24336 2.28558 2.85719 2.92231 3.41592 3.73740 3.83076 3.87743 4.07385 4.40312 4.47792 4.53455 4.54419 4.59922 4.65905 4.75221 4.83786 4.91961 4.92422 4.95522 5.04838 5.15195 5.20793 5.32362 5.38193 5.41824 5.48350 5.61320 5.75438 5.86303 6.13711 6.18753 6.20868 6.27318 6.42557 6.76146 7.00361 7.07832 7.23227 7.75279 8.47119 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.003000 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.910381 B = 9331.010738 C = 9823.559717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.072 3.928 4 C 0.194 3.806 5 C -0.154 4.154 6 C -0.154 4.154 7 N -0.722 5.722 8 C 0.696 3.304 9 O -0.609 6.609 10 N -0.660 5.660 11 C 0.045 3.955 12 C -0.108 4.108 13 C -0.167 4.167 14 C 0.062 3.938 15 C -0.497 4.497 16 H 0.079 0.921 17 C 0.021 3.979 18 N -0.849 5.849 19 Si 0.990 3.010 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.255 1.255 23 C -0.209 4.209 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.412 0.588 37 H 0.415 0.585 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.281 0.719 41 H 0.112 0.888 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.667 0.980 0.417 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.005 4.005 4 C 0.107 3.893 5 C -0.212 4.212 6 C -0.212 4.212 7 N -0.381 5.381 8 C 0.397 3.603 9 O -0.488 6.488 10 N -0.308 5.308 11 C -0.049 4.049 12 C -0.128 4.128 13 C -0.187 4.187 14 C 0.060 3.940 15 C -0.528 4.528 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.477 5.477 19 Si 0.811 3.189 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.179 1.179 23 C -0.228 4.228 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.248 0.752 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.932 -0.344 0.405 20.939 hybrid contribution 0.426 0.513 -0.039 0.668 sum -20.507 0.170 0.366 20.511 Atomic orbital electron populations 1.22947 0.79001 1.03903 1.01098 1.87839 1.21595 1.27181 1.95636 1.22493 0.90072 0.85619 1.02346 1.19945 0.92008 0.81387 0.95910 1.22098 1.01621 1.00833 0.96691 1.22099 1.01686 1.00830 0.96627 1.44832 1.03728 1.09200 1.80304 1.16102 0.82672 0.83593 0.77934 1.90888 1.61424 1.38622 1.57886 1.41882 1.05250 1.07036 1.76650 1.17096 0.81585 0.99991 1.06212 1.20672 0.93465 0.98596 1.00078 1.21163 0.93548 1.01425 1.02614 1.18052 0.94235 0.91951 0.89761 1.19739 0.91944 0.94154 1.47009 0.90330 1.26838 1.05874 0.94146 0.92152 1.69925 1.38964 0.99561 1.39261 0.85088 0.75668 0.78921 0.79255 1.18725 1.19867 1.17910 1.20942 0.93212 1.02946 1.05745 1.20405 0.94998 0.98387 0.99272 0.92863 0.92900 0.88668 0.90840 0.90944 0.93799 0.90835 0.92325 0.92176 0.90855 0.93674 0.75150 0.74813 0.88471 0.87985 0.90906 0.87005 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -7.15 9.35 -148.98 -1.39 -8.54 16 3 C 0.07 1.12 4.92 71.98 0.35 1.47 16 4 C 0.19 4.54 0.89 3.60 0.00 4.54 16 5 C -0.15 -4.25 8.26 71.98 0.59 -3.66 16 6 C -0.15 -4.17 8.25 71.98 0.59 -3.57 16 7 N -0.72 -16.83 5.11 -438.01 -2.24 -19.07 16 8 C 0.70 24.02 7.81 179.05 1.40 25.42 16 9 O -0.61 -27.47 9.96 -3.95 -0.04 -27.51 16 10 N -0.66 -21.73 5.31 -316.78 -1.68 -23.41 16 11 C 0.05 1.98 6.31 38.57 0.24 2.23 16 12 C -0.11 -5.62 8.61 22.14 0.19 -5.42 16 13 C -0.17 -9.60 8.61 22.48 0.19 -9.41 16 14 C 0.06 3.50 5.55 -21.27 -0.12 3.38 16 15 C -0.50 -27.79 9.02 23.39 0.21 -27.58 16 16 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 17 C 0.02 1.11 5.42 85.24 0.46 1.58 16 18 N -0.85 -48.45 10.61 21.82 0.23 -48.21 16 19 Si 0.99 40.70 29.56 68.60 2.03 42.73 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 24 C -0.11 -4.60 9.90 22.14 0.22 -4.39 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 1.58 6.17 -2.39 -0.01 1.57 16 31 H 0.07 1.89 7.68 -2.39 -0.02 1.87 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.86 7.68 -2.39 -0.02 1.84 16 35 H 0.04 1.59 6.16 -2.39 -0.01 1.58 16 36 H 0.41 6.01 8.49 -92.71 -0.79 5.23 16 37 H 0.41 9.54 8.83 -92.71 -0.82 8.72 16 38 H 0.10 5.23 6.22 -2.91 -0.02 5.21 16 39 H 0.10 6.30 6.15 -2.91 -0.02 6.28 16 40 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -73.25 342.17 2.16 -71.10 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.56 Total: 36.67 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.81 Total: -23.74 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.69 Total: -90.70 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.43 Total: -36.05 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -73.25 2.16 -71.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118796888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.129 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds