Wall clock time and date at job start Tue Mar 31 2020 07:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47328 * 2 1 4 4 N 1.46507 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.36797 * 119.99917 * 263.82688 * 4 3 2 6 6 H 1.08001 * 119.99466 * 136.93266 * 5 4 3 7 7 C 1.39105 * 119.99863 * 316.92708 * 5 4 3 8 8 N 1.31317 * 120.00283 * 349.70582 * 7 5 4 9 9 Si 1.86800 * 119.99699 * 169.69974 * 7 5 4 10 10 H 1.48501 * 109.47226 * 90.00082 * 9 7 5 11 11 H 1.48497 * 109.47003 * 210.00436 * 9 7 5 12 12 H 1.48500 * 109.47261 * 330.00175 * 9 7 5 13 13 C 1.34773 * 119.99727 * 83.82039 * 4 3 2 14 14 O 1.21566 * 120.00217 * 3.66515 * 13 4 3 15 15 C 1.48006 * 119.99710 * 183.65979 * 13 4 3 16 16 C 1.39702 * 120.90097 * 332.49715 * 15 13 4 17 17 C 1.38804 * 118.94112 * 179.97438 * 16 15 13 18 18 O 1.35685 * 119.62116 * 180.02562 * 17 16 15 19 19 N 1.32224 * 120.76071 * 0.02562 * 17 16 15 20 20 C 1.31903 * 121.99511 * 359.97438 * 19 17 16 21 21 C 1.50697 * 119.51101 * 179.97438 * 20 19 17 22 22 C 1.52996 * 109.47008 * 264.99533 * 21 20 19 23 23 C 1.52999 * 109.47055 * 144.99784 * 21 20 19 24 24 C 1.37980 * 120.98074 * 0.26319 * 20 19 17 25 25 H 1.09005 * 109.46682 * 59.99968 * 1 2 3 26 26 H 1.08992 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46772 * 300.00479 * 1 2 3 28 28 H 1.08998 * 109.47136 * 239.99520 * 2 1 3 29 29 H 1.09005 * 109.46682 * 120.00032 * 2 1 3 30 30 H 1.09005 * 109.47585 * 60.00019 * 3 2 1 31 31 H 1.09005 * 109.47265 * 299.99675 * 3 2 1 32 32 H 0.97004 * 120.00503 * 180.02562 * 8 7 5 33 33 H 1.08006 * 120.53102 * 359.97438 * 16 15 13 34 34 H 0.96701 * 113.99901 * 270.02330 * 18 17 16 35 35 H 1.08999 * 109.47184 * 24.99529 * 21 20 19 36 36 H 1.09001 * 109.47502 * 60.00223 * 22 21 20 37 37 H 1.08999 * 109.47146 * 300.00020 * 22 21 20 38 38 H 1.09002 * 109.47292 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47291 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.47337 * 299.99831 * 23 21 20 41 41 H 1.08999 * 109.47332 * 59.99837 * 23 21 20 42 42 H 1.07999 * 120.44011 * 179.72693 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1886 1.5700 1.1787 6 1 5.0503 0.9486 1.3731 7 6 3.7738 2.5002 2.1262 8 7 2.8601 3.3908 1.8159 9 14 4.5165 2.4822 3.8401 10 1 5.7158 3.3575 3.8692 11 1 3.5163 2.9802 4.8182 12 1 4.9079 1.0944 4.1955 13 6 4.1794 1.3166 -1.1595 14 8 3.5739 1.2701 -2.2126 15 6 5.6572 1.2351 -1.1513 16 6 6.4028 1.8276 -0.1292 17 6 7.7867 1.7257 -0.1616 18 8 8.5244 2.2955 0.8244 19 7 8.3945 1.0798 -1.1423 20 6 7.7239 0.5083 -2.1238 21 6 8.4738 -0.2132 -3.2137 22 6 8.6895 0.7328 -4.3966 23 6 7.6637 -1.4272 -3.6727 24 6 6.3461 0.5663 -2.1706 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 2.5711 4.0397 2.4765 33 1 5.9103 2.3564 0.6735 34 1 8.7821 3.2100 0.6444 35 1 9.4398 -0.5441 -2.8323 36 1 9.2667 1.5977 -4.0698 37 1 7.7235 1.0637 -4.7780 38 1 9.2324 0.2111 -5.1848 39 1 8.2063 -1.9494 -4.4607 40 1 7.5100 -2.1012 -2.8299 41 1 6.6977 -1.0963 -4.0541 42 1 5.8060 0.0989 -2.9807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121315280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:59 Heat of formation + Delta-G solvation = -47.497173 kcal Electronic energy + Delta-G solvation = -24124.571280 eV Core-core repulsion = 20683.929777 eV Total energy + Delta-G solvation = -3440.641504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.29745 -38.52801 -37.11973 -35.27215 -34.72275 -33.12575 -31.95770 -31.15644 -28.99605 -27.09727 -26.14335 -25.24653 -23.66071 -22.99628 -21.04889 -20.47807 -19.26855 -18.18297 -17.20731 -16.44406 -15.92617 -15.31442 -14.87466 -14.76992 -14.44749 -14.18824 -14.15535 -13.81471 -13.64510 -13.28436 -12.87024 -12.56694 -12.32959 -12.04344 -11.76926 -11.64856 -11.50993 -11.44336 -11.29041 -11.10105 -11.06481 -11.02098 -10.80986 -10.68441 -10.45725 -10.39235 -9.85564 -9.25782 -9.23242 -9.12017 -8.54479 -8.25685 -7.59300 -6.53870 -4.31310 1.41302 1.56616 3.04013 3.13002 3.17382 3.65989 3.92181 3.98061 4.30960 4.52284 4.77038 4.85434 5.04897 5.26114 5.44196 5.55239 5.60650 5.67965 5.73223 5.77514 5.79678 5.85973 5.91383 5.96237 5.99674 6.08516 6.27144 6.30747 6.35796 6.44789 6.48065 6.57670 6.60664 6.74245 6.85828 7.03120 7.04209 7.21611 7.36584 7.78559 7.91003 8.18467 8.36400 8.84115 9.27276 9.71213 10.45621 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.006256 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.321024 B = 4474.935894 C = 6043.960214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.421 5.421 5 C -0.348 4.348 6 H 0.096 0.904 7 C 0.047 3.953 8 N -0.855 5.855 9 Si 0.914 3.086 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.594 6.594 15 C -0.038 4.038 16 C -0.146 4.146 17 C 0.284 3.716 18 O -0.482 6.482 19 N -0.503 5.503 20 C 0.134 3.866 21 C -0.040 4.040 22 C -0.141 4.141 23 C -0.149 4.149 24 C -0.139 4.139 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.274 0.726 33 H 0.187 0.813 34 H 0.393 0.607 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -3.504 -4.180 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.137 5.137 5 C -0.476 4.476 6 H 0.113 0.887 7 C -0.160 4.160 8 N -0.490 5.490 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.481 6.481 15 C -0.049 4.049 16 C -0.167 4.167 17 C 0.106 3.894 18 O -0.288 6.288 19 N -0.223 5.223 20 C -0.004 4.004 21 C -0.060 4.060 22 C -0.198 4.198 23 C -0.206 4.206 24 C -0.160 4.160 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.249 0.751 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.966 -3.894 -4.210 8.275 hybrid contribution -0.435 0.610 0.915 1.183 sum 5.530 -3.283 -3.294 7.226 Atomic orbital electron populations 1.21646 0.96356 1.00529 1.01478 1.21859 0.94964 0.99291 1.01360 1.21501 0.80877 0.94507 1.03772 1.43273 1.05045 1.60570 1.04777 1.19585 1.14228 1.19686 0.94089 0.88699 1.25495 0.96444 0.93952 1.00142 1.69786 1.28703 1.15283 1.35253 0.86121 0.79099 0.79428 0.81474 1.19493 1.20456 1.19018 1.18193 0.85892 0.82070 0.84396 1.90625 1.69364 1.56882 1.31180 1.20408 0.95293 0.95592 0.93611 1.23643 0.92726 0.99854 1.00441 1.19113 0.87391 0.95501 0.87404 1.84789 1.73167 1.31801 1.39012 1.66626 1.43075 1.10573 1.02012 1.20614 0.90324 0.96282 0.93184 1.19966 0.98839 0.94629 0.92531 1.21803 1.02081 0.99174 0.96775 1.21938 1.00430 0.96956 1.01309 1.22017 0.94351 1.00096 0.99550 0.93062 0.93561 0.92921 0.92875 0.92314 0.87443 0.92663 0.91533 0.79681 0.75138 0.89595 0.92487 0.92282 0.92200 0.92104 0.92371 0.91798 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.71 6.21 -26.73 -0.17 -2.87 16 3 C 0.12 2.69 4.86 -4.04 -0.02 2.67 16 4 N -0.42 -10.29 2.50 -115.83 -0.29 -10.58 16 5 C -0.35 -8.38 6.08 -15.02 -0.09 -8.47 16 6 H 0.10 2.28 6.11 -52.49 -0.32 1.95 16 7 C 0.05 1.12 5.04 -17.45 -0.09 1.03 16 8 N -0.86 -21.22 11.28 55.50 0.63 -20.59 16 9 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.51 12.40 7.44 -12.26 -0.09 12.30 16 14 O -0.59 -15.59 16.40 5.31 0.09 -15.50 16 15 C -0.04 -0.83 5.65 -104.68 -0.59 -1.42 16 16 C -0.15 -3.03 7.84 -38.83 -0.30 -3.33 16 17 C 0.28 5.42 7.74 -17.17 -0.13 5.29 16 18 O -0.48 -8.11 13.56 -18.76 -0.25 -8.37 16 19 N -0.50 -9.36 10.27 -9.61 -0.10 -9.46 16 20 C 0.13 2.31 5.78 -82.66 -0.48 1.83 16 21 C -0.04 -0.54 3.23 -91.78 -0.30 -0.83 16 22 C -0.14 -1.65 9.17 37.16 0.34 -1.31 16 23 C -0.15 -1.74 8.62 37.16 0.32 -1.42 16 24 C -0.14 -2.64 8.75 -39.01 -0.34 -2.98 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.11 2.60 5.62 -51.93 -0.29 2.31 16 31 H 0.05 1.33 7.57 -51.93 -0.39 0.94 16 32 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 33 H 0.19 4.10 5.02 -52.48 -0.26 3.83 16 34 H 0.39 4.55 9.06 45.56 0.41 4.97 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.77 6.48 -51.93 -0.34 0.43 16 42 H 0.14 2.51 6.20 -52.49 -0.33 2.19 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -28.94 345.16 -6.63 -35.57 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.30 Total: 11.60 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.57 Total: -1.47 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.24 Total: -40.64 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.17 Total: -23.87 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.94 -6.63 -35.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121315280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.932 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds