Wall clock time and date at job start Tue Mar 31 2020 07:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47328 * 2 1 4 4 N 1.46507 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.36797 * 119.99917 * 263.82688 * 4 3 2 6 6 H 1.08001 * 119.99466 * 136.93266 * 5 4 3 7 7 C 1.39105 * 119.99863 * 316.92708 * 5 4 3 8 8 N 1.31317 * 120.00283 * 349.70582 * 7 5 4 9 9 Si 1.86800 * 119.99699 * 169.69974 * 7 5 4 10 10 H 1.48501 * 109.47226 * 90.00082 * 9 7 5 11 11 H 1.48497 * 109.47003 * 210.00436 * 9 7 5 12 12 H 1.48500 * 109.47261 * 330.00175 * 9 7 5 13 13 C 1.34773 * 119.99727 * 83.82039 * 4 3 2 14 14 O 1.21566 * 120.00217 * 3.66515 * 13 4 3 15 15 C 1.48006 * 119.99710 * 183.65979 * 13 4 3 16 16 C 1.39702 * 120.90097 * 332.49715 * 15 13 4 17 17 C 1.38804 * 118.94112 * 179.97438 * 16 15 13 18 18 O 1.35685 * 119.62116 * 180.02562 * 17 16 15 19 19 N 1.32224 * 120.76071 * 0.02562 * 17 16 15 20 20 C 1.31903 * 121.99511 * 359.97438 * 19 17 16 21 21 C 1.50697 * 119.51101 * 179.97438 * 20 19 17 22 22 C 1.52996 * 109.47008 * 264.99533 * 21 20 19 23 23 C 1.52999 * 109.47055 * 144.99784 * 21 20 19 24 24 C 1.37980 * 120.98074 * 0.26319 * 20 19 17 25 25 H 1.09005 * 109.46682 * 59.99968 * 1 2 3 26 26 H 1.08992 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46772 * 300.00479 * 1 2 3 28 28 H 1.08998 * 109.47136 * 239.99520 * 2 1 3 29 29 H 1.09005 * 109.46682 * 120.00032 * 2 1 3 30 30 H 1.09005 * 109.47585 * 60.00019 * 3 2 1 31 31 H 1.09005 * 109.47265 * 299.99675 * 3 2 1 32 32 H 0.97004 * 120.00503 * 180.02562 * 8 7 5 33 33 H 1.08006 * 120.53102 * 359.97438 * 16 15 13 34 34 H 0.96701 * 113.99901 * 270.02330 * 18 17 16 35 35 H 1.08999 * 109.47184 * 24.99529 * 21 20 19 36 36 H 1.09001 * 109.47502 * 60.00223 * 22 21 20 37 37 H 1.08999 * 109.47146 * 300.00020 * 22 21 20 38 38 H 1.09002 * 109.47292 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47291 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.47337 * 299.99831 * 23 21 20 41 41 H 1.08999 * 109.47332 * 59.99837 * 23 21 20 42 42 H 1.07999 * 120.44011 * 179.72693 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1886 1.5700 1.1787 6 1 5.0503 0.9486 1.3731 7 6 3.7738 2.5002 2.1262 8 7 2.8601 3.3908 1.8159 9 14 4.5165 2.4822 3.8401 10 1 5.7158 3.3575 3.8692 11 1 3.5163 2.9802 4.8182 12 1 4.9079 1.0944 4.1955 13 6 4.1794 1.3166 -1.1595 14 8 3.5739 1.2701 -2.2126 15 6 5.6572 1.2351 -1.1513 16 6 6.4028 1.8276 -0.1292 17 6 7.7867 1.7257 -0.1616 18 8 8.5244 2.2955 0.8244 19 7 8.3945 1.0798 -1.1423 20 6 7.7239 0.5083 -2.1238 21 6 8.4738 -0.2132 -3.2137 22 6 8.6895 0.7328 -4.3966 23 6 7.6637 -1.4272 -3.6727 24 6 6.3461 0.5663 -2.1706 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 2.5711 4.0397 2.4765 33 1 5.9103 2.3564 0.6735 34 1 8.7821 3.2100 0.6444 35 1 9.4398 -0.5441 -2.8323 36 1 9.2667 1.5977 -4.0698 37 1 7.7235 1.0637 -4.7780 38 1 9.2324 0.2111 -5.1848 39 1 8.2063 -1.9494 -4.4607 40 1 7.5100 -2.1012 -2.8299 41 1 6.6977 -1.0963 -4.0541 42 1 5.8060 0.0989 -2.9807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121315280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:58 Heat of formation + Delta-G solvation = -67.031484 kcal Electronic energy + Delta-G solvation = -24125.418352 eV Core-core repulsion = 20683.929777 eV Total energy + Delta-G solvation = -3441.488575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84579 -40.30801 -38.45292 -37.14148 -35.97759 -34.75118 -33.67267 -32.83863 -30.42191 -28.05643 -27.82043 -27.04042 -25.06462 -24.56141 -22.58732 -21.94051 -20.99822 -19.69762 -18.78835 -18.08469 -17.54727 -16.87812 -16.49552 -16.42131 -16.15610 -15.72266 -15.49508 -15.21641 -15.10718 -14.67087 -14.41709 -14.11745 -13.53645 -13.39460 -13.35968 -13.22886 -12.95898 -12.79584 -12.73579 -12.65420 -12.47048 -12.29377 -12.10953 -12.05756 -11.99648 -11.75528 -11.57314 -11.09468 -10.93770 -10.72458 -10.24944 -9.75919 -9.46421 -8.38057 -6.21500 -0.17758 0.06214 1.41022 1.45541 1.55809 1.96749 2.23317 2.51576 2.68704 2.80376 3.04076 3.51702 3.84109 4.04027 4.11288 4.15916 4.18804 4.27067 4.30587 4.41158 4.49279 4.52677 4.71868 4.78674 4.83282 4.89837 4.93274 4.99477 5.02233 5.06472 5.16509 5.20151 5.28427 5.34640 5.36731 5.39616 5.43735 5.52162 5.58720 5.92262 6.30624 6.64845 6.90426 6.96516 7.37924 7.82670 8.62869 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.006256 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.321024 B = 4474.935894 C = 6043.960214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.117 3.883 4 N -0.429 5.429 5 C -0.356 4.356 6 H 0.094 0.906 7 C 0.015 3.985 8 N -0.884 5.884 9 Si 0.974 3.026 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.266 1.266 13 C 0.493 3.507 14 O -0.623 6.623 15 C -0.059 4.059 16 C -0.159 4.159 17 C 0.293 3.707 18 O -0.485 6.485 19 N -0.506 5.506 20 C 0.145 3.855 21 C -0.039 4.039 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.278 0.722 33 H 0.170 0.830 34 H 0.416 0.584 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -4.431 -4.131 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C -0.006 4.006 4 N -0.145 5.145 5 C -0.484 4.484 6 H 0.112 0.888 7 C -0.190 4.190 8 N -0.520 5.520 9 Si 0.797 3.203 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.190 1.190 13 C 0.282 3.718 14 O -0.512 6.512 15 C -0.070 4.070 16 C -0.180 4.180 17 C 0.115 3.885 18 O -0.294 6.294 19 N -0.226 5.226 20 C 0.007 3.993 21 C -0.059 4.059 22 C -0.195 4.195 23 C -0.204 4.204 24 C -0.163 4.163 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.187 0.813 34 H 0.276 0.724 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.489 -4.802 -4.151 9.817 hybrid contribution -0.848 0.924 0.852 1.516 sum 6.641 -3.878 -3.299 8.368 Atomic orbital electron populations 1.21601 0.93303 1.02435 1.01899 1.21758 0.97589 0.96667 1.00513 1.21497 0.80634 0.96360 1.02089 1.43516 1.05615 1.60235 1.05097 1.19704 1.14458 1.20107 0.94096 0.88846 1.26175 0.96530 0.93218 1.03034 1.69875 1.29773 1.15917 1.36455 0.85205 0.78497 0.79296 0.77292 1.18860 1.20005 1.19008 1.18692 0.87285 0.81746 0.84033 1.90576 1.70341 1.58316 1.31946 1.20339 0.93849 0.97489 0.95313 1.23397 0.93607 1.00790 1.00219 1.19078 0.86873 0.95046 0.87508 1.84724 1.72582 1.33635 1.38453 1.66828 1.42834 1.10732 1.02195 1.21296 0.89906 0.94769 0.93376 1.20143 0.98847 0.95128 0.91743 1.21794 1.02036 0.98884 0.96741 1.21940 1.00281 0.96237 1.01944 1.22134 0.95199 0.99960 0.98993 0.92836 0.90883 0.92326 0.94147 0.92550 0.88508 0.94677 0.91208 0.81303 0.72379 0.88629 0.93103 0.93017 0.89184 0.89107 0.93045 0.92486 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.91 71.98 0.71 -3.55 16 2 C -0.13 -5.12 6.21 30.59 0.19 -4.93 16 3 C 0.12 5.61 4.86 86.38 0.42 6.03 16 4 N -0.43 -21.77 2.50 -638.64 -1.60 -23.37 16 5 C -0.36 -17.55 6.08 84.13 0.51 -17.04 16 6 H 0.09 4.58 6.11 -2.91 -0.02 4.56 16 7 C 0.02 0.73 5.04 84.98 0.43 1.16 16 8 N -0.88 -44.66 11.28 21.69 0.24 -44.41 16 9 Si 0.97 38.05 29.57 68.60 2.03 40.08 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 12 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 13 C 0.49 25.09 7.44 86.83 0.65 25.74 16 14 O -0.62 -34.03 16.40 -3.92 -0.06 -34.09 16 15 C -0.06 -2.64 5.65 -19.90 -0.11 -2.75 16 16 C -0.16 -6.69 7.84 22.76 0.18 -6.51 16 17 C 0.29 10.95 7.74 84.77 0.66 11.60 16 18 O -0.48 -15.54 13.56 -90.04 -1.22 -16.76 16 19 N -0.51 -18.10 10.27 -297.19 -3.05 -21.15 16 20 C 0.14 4.80 5.78 42.49 0.25 5.05 16 21 C -0.04 -0.96 3.23 -11.54 -0.04 -0.99 16 22 C -0.14 -2.84 9.17 71.98 0.66 -2.18 16 23 C -0.15 -3.07 8.62 71.98 0.62 -2.45 16 24 C -0.14 -5.39 8.75 22.64 0.20 -5.19 16 25 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.10 4.84 5.62 -2.38 -0.01 4.82 16 31 H 0.03 1.78 7.57 -2.38 -0.02 1.76 16 32 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 33 H 0.17 7.66 5.02 -2.91 -0.01 7.65 16 34 H 0.42 8.86 9.06 -74.06 -0.67 8.18 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.28 6.48 -2.39 -0.02 1.26 16 42 H 0.15 5.27 6.20 -2.91 -0.02 5.25 16 Total: -1.00 -63.12 345.16 2.03 -61.10 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.37 Total: 34.63 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.32 Total: 3.98 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -4.41 Total: -88.93 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -1.28 Total: -50.85 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -63.12 2.03 -61.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121315280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.932 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds