Wall clock time and date at job start Tue Mar 31 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 N 1.46500 * 109.47463 * 120.00027 * 2 1 3 5 5 C 1.34780 * 120.00170 * 84.99192 * 4 2 1 6 6 O 1.21593 * 120.00015 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00267 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99951 * 5.33395 * 7 5 4 9 9 C 1.40153 * 120.00047 * 185.33201 * 7 5 4 10 10 C 1.38837 * 120.01553 * 114.86556 * 9 7 5 11 11 C 1.38086 * 119.98496 * 180.23141 * 10 9 7 12 12 C 1.38716 * 120.01866 * 359.47217 * 11 10 9 13 13 O 1.35971 * 119.98999 * 180.27756 * 12 11 10 14 14 C 1.42908 * 117.00074 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46998 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00213 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00078 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99436 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47136 * 90.00199 * 19 17 15 21 21 H 1.48504 * 109.47048 * 210.00056 * 19 17 15 22 22 H 1.48499 * 109.47393 * 329.99808 * 19 17 15 23 23 C 1.38715 * 120.02543 * 0.25183 * 12 11 10 24 24 C 1.38101 * 120.01370 * 0.02562 * 23 12 11 25 25 H 1.08998 * 109.46669 * 59.99799 * 1 2 3 26 26 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46855 * 300.00078 * 1 2 3 28 28 H 1.09001 * 109.47305 * 239.99728 * 2 1 3 29 29 H 1.09000 * 109.47408 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47487 * 299.99700 * 3 2 1 31 31 H 1.08997 * 109.47293 * 60.00190 * 3 2 1 32 32 H 0.97000 * 120.00433 * 265.00682 * 4 2 1 33 33 H 1.09000 * 109.47266 * 269.99628 * 8 7 5 34 34 H 1.09001 * 109.46946 * 29.99624 * 8 7 5 35 35 H 1.09001 * 109.47613 * 149.99294 * 8 7 5 36 36 H 1.08006 * 120.00301 * 359.97438 * 10 9 7 37 37 H 1.08004 * 119.99334 * 179.74742 * 11 10 9 38 38 H 1.08999 * 109.46940 * 299.99817 * 14 13 12 39 39 H 1.09002 * 109.46699 * 59.99725 * 14 13 12 40 40 H 0.97008 * 119.99515 * 179.97438 * 18 17 15 41 41 H 1.07996 * 119.99927 * 180.02562 * 23 12 11 42 42 H 1.08004 * 120.00867 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -2.0322 1.1944 6 8 1.8581 -2.6694 0.1999 7 7 2.5959 -2.6676 2.2950 8 6 2.8327 -1.9155 3.5296 9 6 2.8360 -4.0480 2.2583 10 6 4.1278 -4.5325 2.4131 11 6 4.3643 -5.8924 2.3721 12 6 3.3101 -6.7748 2.1873 13 8 3.5429 -8.1140 2.1526 14 6 2.4109 -8.9646 1.9595 15 6 2.8596 -10.4031 1.9482 16 1 3.9046 -10.6439 2.0762 17 6 1.9359 -11.4121 1.7756 18 7 0.6632 -11.1189 1.6203 19 14 2.4919 -13.1953 1.7623 20 1 2.4545 -13.7358 3.1449 21 1 1.5853 -13.9901 0.8954 22 1 3.8781 -13.2777 1.2360 23 6 2.0184 -6.2917 2.0383 24 6 1.7813 -4.9316 2.0734 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.2491 -0.1824 1.9895 33 1 3.8605 -1.5526 3.5426 34 1 2.1478 -1.0688 3.5763 35 1 2.6660 -2.5653 4.3887 36 1 4.9481 -3.8458 2.5614 37 1 5.3698 -6.2693 2.4884 38 1 1.6992 -8.8119 2.7708 39 1 1.9348 -8.7253 1.0086 40 1 0.0134 -11.8287 1.4985 41 1 1.1980 -6.9791 1.8949 42 1 0.7755 -4.5555 1.9578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122429272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:25 Heat of formation + Delta-G solvation = -40.153758 kcal Electronic energy + Delta-G solvation = -22775.852053 eV Core-core repulsion = 19335.528984 eV Total energy + Delta-G solvation = -3440.323069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63675 -39.16066 -37.27628 -35.89971 -35.00069 -32.88499 -31.49461 -30.64583 -28.90108 -27.54522 -27.50963 -26.43643 -23.48520 -22.86382 -21.71692 -20.97262 -20.03468 -18.21118 -17.49076 -16.85399 -16.53572 -15.94580 -15.59185 -14.92112 -14.59675 -14.56840 -14.29142 -14.16070 -14.01304 -13.44618 -13.06223 -13.04102 -12.96631 -12.68256 -12.61769 -12.40928 -12.09929 -11.93334 -11.69225 -11.63757 -11.21242 -11.02024 -10.95778 -10.61702 -10.19206 -10.14698 -10.07392 -9.30392 -9.25785 -8.88288 -8.60892 -8.52667 -7.34681 -6.22718 -4.26439 1.75923 1.81870 2.54025 3.15339 3.25714 3.30808 3.35883 3.77206 4.17472 4.21577 4.55396 4.56741 4.77267 4.82836 4.95874 5.13235 5.14404 5.26627 5.30343 5.34076 5.38263 5.42761 5.48673 5.62258 5.73828 5.77259 5.81030 6.01730 6.03292 6.22140 6.38187 6.42797 6.56074 6.78170 6.90677 6.94941 7.02806 7.17576 7.35930 7.70041 7.81579 7.97651 8.48139 8.57908 8.86080 9.38603 10.88544 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002761 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.448569 B =10137.019772 C =10653.205505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 C -0.159 4.159 4 N -0.743 5.743 5 C 0.704 3.296 6 O -0.572 6.572 7 N -0.581 5.581 8 C 0.081 3.919 9 C 0.087 3.913 10 C -0.082 4.082 11 C -0.161 4.161 12 C 0.157 3.843 13 O -0.316 6.316 14 C 0.191 3.809 15 C -0.524 4.524 16 H 0.071 0.929 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.914 3.086 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.203 4.203 24 C -0.057 4.057 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.394 0.606 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.267 0.733 41 H 0.137 0.863 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 25.415 2.636 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 C -0.217 4.217 4 N -0.401 5.401 5 C 0.406 3.594 6 O -0.448 6.448 7 N -0.314 5.314 8 C -0.062 4.062 9 C -0.003 4.003 10 C -0.102 4.102 11 C -0.181 4.181 12 C 0.108 3.892 13 O -0.228 6.228 14 C 0.119 3.881 15 C -0.562 4.562 16 H 0.089 0.911 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.740 3.260 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.222 4.222 24 C -0.077 4.077 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.079 24.762 1.866 24.919 hybrid contribution -0.098 -0.573 0.421 0.717 sum 1.981 24.190 2.287 24.378 Atomic orbital electron populations 1.22212 0.95479 1.02867 1.01759 1.20801 0.93945 0.92236 0.88266 1.22071 1.01711 0.95094 1.02810 1.45379 1.72128 1.05251 1.17315 1.15933 0.78402 0.81851 0.83239 1.90971 1.55597 1.65401 1.32833 1.44319 1.69969 1.06511 1.10584 1.21781 1.00852 0.96578 0.86962 1.17008 0.92924 0.80820 1.09576 1.20756 0.94961 0.94633 0.99870 1.20232 0.98453 0.91355 1.08022 1.19300 0.92829 0.85300 0.91739 1.86138 1.39846 1.12061 1.84770 1.20673 0.82817 0.88067 0.96546 1.20976 0.95350 0.88822 1.51049 0.91119 1.24945 0.94619 0.99991 0.94709 1.69958 1.01181 1.33575 1.48517 0.86240 0.78717 0.82853 0.78153 1.20304 1.20916 1.19486 1.21353 0.97183 0.95832 1.07828 1.20885 0.98105 0.92167 0.96533 0.91718 0.91845 0.92719 0.89342 0.92001 0.90844 0.92211 0.77137 0.92570 0.91543 0.90291 0.86110 0.85243 0.96000 0.95936 0.92329 0.84536 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.15 1.34 3.18 -67.93 -0.22 1.13 16 3 C -0.16 -0.88 9.38 37.16 0.35 -0.53 16 4 N -0.74 -7.19 4.92 -58.67 -0.29 -7.48 16 5 C 0.70 10.00 8.11 -86.92 -0.71 9.30 16 6 O -0.57 -10.83 15.49 5.28 0.08 -10.75 16 7 N -0.58 -7.57 2.94 -126.19 -0.37 -7.94 16 8 C 0.08 0.65 9.95 59.85 0.60 1.24 16 9 C 0.09 1.40 4.90 -83.61 -0.41 0.99 16 10 C -0.08 -1.27 9.81 -39.42 -0.39 -1.65 16 11 C -0.16 -2.84 9.98 -39.46 -0.39 -3.24 16 12 C 0.16 3.30 6.69 -39.23 -0.26 3.04 16 13 O -0.32 -7.80 10.12 -19.65 -0.20 -8.00 16 14 C 0.19 5.19 4.49 36.00 0.16 5.35 16 15 C -0.52 -15.17 9.43 -34.44 -0.32 -15.49 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.20 -4.10 9.03 -39.46 -0.36 -4.45 16 24 C -0.06 -1.03 9.21 -39.41 -0.36 -1.39 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.39 2.62 6.48 -40.82 -0.26 2.35 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.37 6.60 -51.93 -0.34 0.03 16 35 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 38 H 0.02 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.02 0.64 7.66 -51.93 -0.40 0.24 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.14 2.89 6.29 -52.49 -0.33 2.56 16 42 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -33.85 354.31 -8.10 -41.95 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.32 Total: 1.06 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.06 Total: -5.15 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.08 Total: -40.95 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.12 Total: -18.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.85 -8.10 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122429272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.796 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds