Wall clock time and date at job start Tue Mar 31 2020 07:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 N 1.46500 * 109.47463 * 120.00027 * 2 1 3 5 5 C 1.34780 * 120.00170 * 84.99192 * 4 2 1 6 6 O 1.21593 * 120.00015 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00267 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99951 * 5.33395 * 7 5 4 9 9 C 1.40153 * 120.00047 * 185.33201 * 7 5 4 10 10 C 1.38837 * 120.01553 * 114.86556 * 9 7 5 11 11 C 1.38086 * 119.98496 * 180.23141 * 10 9 7 12 12 C 1.38716 * 120.01866 * 359.47217 * 11 10 9 13 13 O 1.35971 * 119.98999 * 180.27756 * 12 11 10 14 14 C 1.42908 * 117.00074 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46998 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00213 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00078 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99436 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47136 * 90.00199 * 19 17 15 21 21 H 1.48504 * 109.47048 * 210.00056 * 19 17 15 22 22 H 1.48499 * 109.47393 * 329.99808 * 19 17 15 23 23 C 1.38715 * 120.02543 * 0.25183 * 12 11 10 24 24 C 1.38101 * 120.01370 * 0.02562 * 23 12 11 25 25 H 1.08998 * 109.46669 * 59.99799 * 1 2 3 26 26 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46855 * 300.00078 * 1 2 3 28 28 H 1.09001 * 109.47305 * 239.99728 * 2 1 3 29 29 H 1.09000 * 109.47408 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47487 * 299.99700 * 3 2 1 31 31 H 1.08997 * 109.47293 * 60.00190 * 3 2 1 32 32 H 0.97000 * 120.00433 * 265.00682 * 4 2 1 33 33 H 1.09000 * 109.47266 * 269.99628 * 8 7 5 34 34 H 1.09001 * 109.46946 * 29.99624 * 8 7 5 35 35 H 1.09001 * 109.47613 * 149.99294 * 8 7 5 36 36 H 1.08006 * 120.00301 * 359.97438 * 10 9 7 37 37 H 1.08004 * 119.99334 * 179.74742 * 11 10 9 38 38 H 1.08999 * 109.46940 * 299.99817 * 14 13 12 39 39 H 1.09002 * 109.46699 * 59.99725 * 14 13 12 40 40 H 0.97008 * 119.99515 * 179.97438 * 18 17 15 41 41 H 1.07996 * 119.99927 * 180.02562 * 23 12 11 42 42 H 1.08004 * 120.00867 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -2.0322 1.1944 6 8 1.8581 -2.6694 0.1999 7 7 2.5959 -2.6676 2.2950 8 6 2.8327 -1.9155 3.5296 9 6 2.8360 -4.0480 2.2583 10 6 4.1278 -4.5325 2.4131 11 6 4.3643 -5.8924 2.3721 12 6 3.3101 -6.7748 2.1873 13 8 3.5429 -8.1140 2.1526 14 6 2.4109 -8.9646 1.9595 15 6 2.8596 -10.4031 1.9482 16 1 3.9046 -10.6439 2.0762 17 6 1.9359 -11.4121 1.7756 18 7 0.6632 -11.1189 1.6203 19 14 2.4919 -13.1953 1.7623 20 1 2.4545 -13.7358 3.1449 21 1 1.5853 -13.9901 0.8954 22 1 3.8781 -13.2777 1.2360 23 6 2.0184 -6.2917 2.0383 24 6 1.7813 -4.9316 2.0734 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.2491 -0.1824 1.9895 33 1 3.8605 -1.5526 3.5426 34 1 2.1478 -1.0688 3.5763 35 1 2.6660 -2.5653 4.3887 36 1 4.9481 -3.8458 2.5614 37 1 5.3698 -6.2693 2.4884 38 1 1.6992 -8.8119 2.7708 39 1 1.9348 -8.7253 1.0086 40 1 0.0134 -11.8287 1.4985 41 1 1.1980 -6.9791 1.8949 42 1 0.7755 -4.5555 1.9578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122429272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:24 Heat of formation + Delta-G solvation = -62.137023 kcal Electronic energy + Delta-G solvation = -22776.805319 eV Core-core repulsion = 19335.528984 eV Total energy + Delta-G solvation = -3441.276335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.78690 -40.67341 -38.66896 -36.93350 -36.24890 -35.03232 -32.43974 -32.09711 -30.43085 -29.26302 -28.07975 -27.47161 -25.41378 -24.12172 -23.18194 -22.00754 -21.16239 -19.32774 -19.13858 -18.49070 -18.05437 -17.21137 -16.83177 -16.49021 -16.38027 -15.99797 -15.49088 -15.24980 -15.13432 -14.69199 -14.41812 -14.12252 -13.99811 -13.73217 -13.65706 -13.51484 -13.20056 -13.07363 -13.03401 -12.95433 -12.80219 -12.37289 -12.29299 -12.00883 -11.90538 -11.88481 -11.39028 -11.32187 -10.73865 -10.30999 -10.03305 -9.89979 -8.87507 -8.40591 -6.55492 0.31709 0.34895 1.38491 1.42020 1.53977 1.55028 2.05315 2.26238 2.70197 2.71472 2.94076 2.99479 3.84304 3.92969 3.95877 4.16066 4.18482 4.25891 4.34059 4.40902 4.54263 4.64672 4.69170 4.73705 4.76739 4.83917 4.89231 4.94179 4.94538 5.00569 5.05430 5.25288 5.33514 5.36834 5.38601 5.51851 5.51987 5.58701 5.77282 5.81694 6.06329 6.48519 6.75679 6.92392 7.16538 7.52921 8.71923 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002761 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.448569 B =10137.019772 C =10653.205505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 C -0.148 4.148 4 N -0.722 5.722 5 C 0.697 3.303 6 O -0.629 6.629 7 N -0.582 5.582 8 C 0.072 3.928 9 C 0.103 3.897 10 C -0.068 4.068 11 C -0.151 4.151 12 C 0.113 3.887 13 O -0.333 6.333 14 C 0.211 3.789 15 C -0.557 4.557 16 H 0.070 0.930 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.991 3.009 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.262 1.262 23 C -0.216 4.216 24 C -0.068 4.068 25 H 0.079 0.921 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.412 0.588 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.166 0.834 37 H 0.150 0.850 38 H 0.002 0.998 39 H -0.004 1.004 40 H 0.274 0.726 41 H 0.110 0.890 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 27.924 3.753 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.206 4.206 4 N -0.380 5.380 5 C 0.399 3.601 6 O -0.509 6.509 7 N -0.315 5.315 8 C -0.069 4.069 9 C 0.011 3.989 10 C -0.087 4.087 11 C -0.170 4.170 12 C 0.067 3.933 13 O -0.246 6.246 14 C 0.138 3.862 15 C -0.594 4.594 16 H 0.088 0.912 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.813 3.187 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.235 4.235 24 C -0.088 4.088 25 H 0.098 0.902 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.251 0.749 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.183 0.817 37 H 0.168 0.832 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.765 27.367 3.035 27.791 hybrid contribution -0.659 -1.087 0.082 1.274 sum 3.106 26.280 3.116 26.645 Atomic orbital electron populations 1.22175 0.95327 1.00939 1.03446 1.20938 0.94100 0.93921 0.86784 1.22006 1.01841 0.92364 1.04383 1.45239 1.70758 1.03594 1.18381 1.16195 0.78123 0.83037 0.82723 1.90944 1.57968 1.66886 1.35095 1.44434 1.69609 1.05317 1.12101 1.22148 1.03387 0.96898 0.84420 1.17172 0.92648 0.82429 1.06611 1.21137 0.95712 0.94130 0.97738 1.20545 0.98296 0.91779 1.06398 1.19686 0.94334 0.84219 0.95073 1.86056 1.38469 1.13876 1.86235 1.20186 0.83228 0.88449 0.94370 1.21332 0.95671 0.89995 1.52413 0.91205 1.26034 0.94474 1.05142 0.93431 1.70078 1.02482 1.35503 1.48548 0.85064 0.78581 0.76193 0.78867 1.18920 1.19856 1.18632 1.21207 0.96501 0.96632 1.09196 1.20931 0.99082 0.91542 0.97287 0.90188 0.95490 0.90916 0.92294 0.91691 0.89697 0.90216 0.74896 0.89771 0.88800 0.90069 0.81673 0.83187 0.97979 0.98572 0.91726 0.87184 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.15 2.37 3.18 44.99 0.14 2.51 16 3 C -0.15 -1.14 9.38 71.98 0.68 -0.47 16 4 N -0.72 -12.31 4.92 -457.81 -2.25 -14.56 16 5 C 0.70 19.05 8.11 179.05 1.45 20.50 16 6 O -0.63 -24.36 15.49 -4.01 -0.06 -24.42 16 7 N -0.58 -13.89 2.94 -671.40 -1.97 -15.86 16 8 C 0.07 0.86 9.95 127.77 1.27 2.13 16 9 C 0.10 3.21 4.90 38.10 0.19 3.39 16 10 C -0.07 -1.92 9.81 22.38 0.22 -1.70 16 11 C -0.15 -5.21 9.98 22.35 0.22 -4.99 16 12 C 0.11 5.01 6.69 22.50 0.15 5.17 16 13 O -0.33 -17.42 10.12 -93.22 -0.94 -18.37 16 14 C 0.21 12.30 4.49 71.23 0.32 12.62 16 15 C -0.56 -33.57 9.43 25.60 0.24 -33.33 16 16 H 0.07 4.11 7.81 -2.91 -0.02 4.08 16 17 C 0.01 0.49 5.46 84.66 0.46 0.95 16 18 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 19 Si 0.99 44.45 29.54 68.60 2.03 46.48 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 23 C -0.22 -9.42 9.03 22.35 0.20 -9.22 16 24 C -0.07 -2.57 9.21 22.38 0.21 -2.36 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.32 7.58 -2.39 -0.02 1.30 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.41 3.84 6.48 -92.71 -0.60 3.24 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.62 6.60 -2.39 -0.02 0.61 16 35 H 0.08 1.00 8.05 -2.39 -0.02 0.98 16 36 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 37 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.00 0.15 7.66 -2.39 -0.02 0.13 16 39 H 0.00 -0.22 7.66 -2.39 -0.02 -0.23 16 40 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 41 H 0.11 5.26 6.29 -2.91 -0.02 5.24 16 42 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -79.33 354.31 3.93 -75.40 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.41 Total: 14.02 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 6.44 Total: -6.67 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -3.94 Total: -86.44 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.01 Total: -42.79 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -79.33 3.93 -75.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122429272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.267 kcal (2) G-P(sol) polarization free energy of solvation -79.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds