Wall clock time and date at job start Tue Mar 31 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47411 * 2 1 4 4 C 1.35979 * 117.00348 * 180.02562 * 3 2 1 5 5 C 1.38714 * 119.99108 * 180.02562 * 4 3 2 6 6 C 1.38098 * 120.01548 * 180.02562 * 5 4 3 7 7 C 1.38828 * 119.98882 * 359.97438 * 6 5 4 8 8 N 1.40149 * 120.01871 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99817 * 33.27067 * 8 7 6 10 10 O 1.21597 * 119.99907 * 5.31523 * 9 8 7 11 11 N 1.34774 * 120.00227 * 185.31846 * 9 8 7 12 12 C 1.46496 * 120.00207 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46978 * 324.99393 * 12 11 9 14 14 C 1.50707 * 109.46958 * 205.00035 * 12 11 9 15 15 H 1.07998 * 120.00006 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99561 * 180.02562 * 14 12 11 17 17 N 1.31510 * 120.00182 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99492 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47172 * 90.00046 * 18 16 14 20 20 H 1.48508 * 109.46933 * 209.99570 * 18 16 14 21 21 H 1.48494 * 109.47390 * 329.99743 * 18 16 14 22 22 C 1.52993 * 109.47259 * 85.00019 * 12 11 9 23 23 C 1.53005 * 109.46758 * 294.99981 * 22 12 11 24 24 C 1.38836 * 119.96755 * 0.27817 * 7 6 5 25 25 C 1.38102 * 119.98654 * 359.44260 * 24 7 6 26 26 H 1.08995 * 109.46971 * 59.99504 * 1 2 3 27 27 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46873 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.46873 * 239.99989 * 2 1 3 30 30 H 1.09007 * 109.47347 * 120.00509 * 2 1 3 31 31 H 1.07997 * 119.99142 * 359.97438 * 5 4 3 32 32 H 1.08005 * 120.00249 * 179.97438 * 6 5 4 33 33 H 0.96993 * 120.00216 * 213.27098 * 8 7 6 34 34 H 0.97002 * 119.99598 * 0.02562 * 11 9 8 35 35 H 0.97007 * 119.99837 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47586 * 54.99656 * 22 12 11 37 37 H 1.09005 * 109.47437 * 175.00336 * 22 12 11 38 38 H 1.09001 * 109.47159 * 299.99461 * 23 22 12 39 39 H 1.08997 * 109.47369 * 60.00398 * 23 22 12 40 40 H 1.09008 * 109.46946 * 180.02562 * 23 22 12 41 41 H 1.08000 * 120.00711 * 179.70364 * 24 7 6 42 42 H 1.08002 * 119.99143 * 180.27866 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 3.8844 2.8072 0.0000 6 6 5.2534 2.9888 -0.0011 7 6 6.0994 1.8880 -0.0022 8 7 7.4888 2.0715 -0.0027 9 6 8.0294 3.1269 0.6380 10 8 7.3228 3.8653 1.2968 11 7 9.3531 3.3638 0.5485 12 6 9.9406 4.5113 1.2444 13 1 9.2342 5.3414 1.2367 14 6 11.2104 4.9258 0.5465 15 1 11.5463 4.3880 -0.3277 16 6 11.9437 5.9910 1.0248 17 7 11.5348 6.6455 2.0896 18 14 13.5179 6.5043 0.1601 19 1 13.2029 7.5109 -0.8852 20 1 14.4558 7.0944 1.1488 21 1 14.1465 5.3159 -0.4704 22 6 10.2566 4.1237 2.6903 23 6 8.9536 3.8229 3.4340 24 6 5.5683 0.6053 -0.0080 25 6 4.1991 0.4250 -0.0011 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2263 3.6635 0.0004 32 1 5.6659 3.9870 -0.0011 33 1 8.0614 1.4391 -0.4642 34 1 9.9167 2.7750 0.0226 35 1 12.0505 7.3952 2.4259 36 1 10.8923 3.2383 2.6986 37 1 10.7740 4.9472 3.1825 38 1 8.3179 4.7083 3.4258 39 1 8.4362 2.9994 2.9419 40 1 9.1787 3.5472 4.4643 41 1 6.2258 -0.2515 -0.0137 42 1 3.7859 -0.5728 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155398149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:13 Heat of formation + Delta-G solvation = -46.737503 kcal Electronic energy + Delta-G solvation = -22983.260151 eV Core-core repulsion = 19542.651589 eV Total energy + Delta-G solvation = -3440.608562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40749 -39.46864 -37.48330 -35.23502 -33.95378 -32.40965 -31.87880 -30.84708 -30.75737 -28.25436 -26.70603 -24.26401 -23.16665 -22.29999 -21.98501 -20.39973 -19.49721 -18.33118 -18.09870 -17.25417 -16.22015 -16.04865 -15.68837 -15.17735 -14.89262 -14.28521 -14.11031 -13.65956 -13.48470 -13.45311 -13.19697 -12.92765 -12.65778 -12.55754 -12.34884 -11.95473 -11.83234 -11.54585 -11.25479 -11.03672 -10.96309 -10.84963 -10.76995 -10.31526 -10.17328 -9.73077 -9.51393 -9.36301 -9.04585 -8.85052 -8.50717 -7.90075 -7.43157 -6.13027 -4.22338 1.43192 1.52855 3.11334 3.23853 3.26214 3.31463 3.34707 3.68410 4.09471 4.31880 4.67253 4.69331 4.87922 4.91471 4.98729 5.01243 5.18707 5.23644 5.40897 5.51512 5.52101 5.74667 5.75712 6.06881 6.08825 6.35864 6.42240 6.47951 6.50214 6.66784 6.71765 7.03772 7.09273 7.16835 7.37041 7.39089 7.46210 7.48087 7.64303 7.87247 7.99629 8.18768 8.73850 8.85780 9.27036 9.46495 10.92308 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039761 B = 0.002820 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.041014 B = 9927.217166 C =10053.934935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.099 3.901 5 C -0.129 4.129 6 C -0.081 4.081 7 C 0.150 3.850 8 N -0.697 5.697 9 C 0.692 3.308 10 O -0.576 6.576 11 N -0.719 5.719 12 C 0.286 3.714 13 H 0.050 0.950 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.881 5.881 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.119 4.119 25 C -0.189 4.189 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.400 0.600 34 H 0.385 0.615 35 H 0.265 0.735 36 H 0.030 0.970 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.021 0.979 41 H 0.124 0.876 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 -14.318 -5.162 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.054 3.946 5 C -0.149 4.149 6 C -0.102 4.102 7 C 0.054 3.946 8 N -0.345 5.345 9 C 0.392 3.608 10 O -0.454 6.454 11 N -0.370 5.370 12 C 0.184 3.816 13 H 0.068 0.932 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.167 4.167 23 C -0.193 4.193 24 C -0.141 4.141 25 C -0.208 4.208 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.164 0.836 33 H 0.235 0.765 34 H 0.217 0.783 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.142 0.858 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.275 -13.242 -4.401 20.689 hybrid contribution 1.580 -0.643 -0.813 1.890 sum -13.695 -13.885 -5.214 20.188 Atomic orbital electron populations 1.21769 0.93012 1.02630 1.03490 1.22710 0.95643 0.82492 1.01181 1.86062 1.19315 1.28700 1.89311 1.18897 0.81969 0.94140 0.99593 1.20324 0.94730 0.94703 1.05094 1.21133 0.91497 0.99786 0.97756 1.17449 0.82693 0.93201 1.01283 1.42861 1.05049 1.29307 1.57329 1.16119 0.83588 0.81045 0.80004 1.90905 1.60650 1.48964 1.44848 1.45835 1.04920 1.32608 1.53657 1.18718 0.92863 0.81981 0.88002 0.93194 1.21219 1.07584 1.15519 1.12940 0.92111 1.24878 0.97950 0.95912 0.94940 1.69897 1.39020 1.20585 1.22355 0.86447 0.82607 0.78786 0.79232 1.20570 1.21078 1.19905 1.21958 0.95511 1.01040 0.98238 1.21818 0.99055 1.01033 0.97368 1.20604 0.94681 0.95449 1.03331 1.20896 0.93467 0.97769 1.08676 0.91590 0.90583 0.91552 0.92281 0.92243 0.85161 0.83585 0.76506 0.78271 0.92532 0.95134 0.88273 0.93121 0.94279 0.96032 0.85764 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.90 10.14 -19.67 -0.20 -4.10 16 4 C 0.10 1.32 6.69 -39.23 -0.26 1.06 16 5 C -0.13 -1.87 9.98 -39.46 -0.39 -2.26 16 6 C -0.08 -1.31 8.65 -39.41 -0.34 -1.66 16 7 C 0.15 2.27 6.28 -83.61 -0.53 1.74 16 8 N -0.70 -10.63 5.36 -14.19 -0.08 -10.71 16 9 C 0.69 13.64 6.87 -86.92 -0.60 13.04 16 10 O -0.58 -13.31 11.16 5.28 0.06 -13.25 16 11 N -0.72 -14.57 5.03 -59.81 -0.30 -14.87 16 12 C 0.29 7.10 2.24 -69.08 -0.15 6.94 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 17 N -0.88 -24.48 11.29 55.43 0.63 -23.85 16 18 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 23 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 24 C -0.12 -1.49 9.96 -39.41 -0.39 -1.88 16 25 C -0.19 -2.23 9.03 -39.46 -0.36 -2.59 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.06 0.46 7.66 -51.92 -0.40 0.06 16 31 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.15 2.66 6.41 -52.48 -0.34 2.33 16 33 H 0.40 4.71 8.83 -40.82 -0.36 4.34 16 34 H 0.39 6.70 8.56 -40.82 -0.35 6.35 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 38 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 39 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 40 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -30.64 342.55 -8.49 -39.13 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.08 Total: 11.15 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.66 Total: -4.06 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.25 Total: -49.43 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.14 Total: -17.35 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.64 -8.49 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155398149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.606 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds