Wall clock time and date at job start Tue Mar 31 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47411 * 2 1 4 4 C 1.35979 * 117.00348 * 180.02562 * 3 2 1 5 5 C 1.38714 * 119.99108 * 180.02562 * 4 3 2 6 6 C 1.38098 * 120.01548 * 180.02562 * 5 4 3 7 7 C 1.38828 * 119.98882 * 359.97438 * 6 5 4 8 8 N 1.40149 * 120.01871 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99817 * 33.27067 * 8 7 6 10 10 O 1.21597 * 119.99907 * 5.31523 * 9 8 7 11 11 N 1.34774 * 120.00227 * 185.31846 * 9 8 7 12 12 C 1.46496 * 120.00207 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46978 * 324.99393 * 12 11 9 14 14 C 1.50707 * 109.46958 * 205.00035 * 12 11 9 15 15 H 1.07998 * 120.00006 * 359.97438 * 14 12 11 16 16 C 1.37880 * 119.99561 * 180.02562 * 14 12 11 17 17 N 1.31510 * 120.00182 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99492 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47172 * 90.00046 * 18 16 14 20 20 H 1.48508 * 109.46933 * 209.99570 * 18 16 14 21 21 H 1.48494 * 109.47390 * 329.99743 * 18 16 14 22 22 C 1.52993 * 109.47259 * 85.00019 * 12 11 9 23 23 C 1.53005 * 109.46758 * 294.99981 * 22 12 11 24 24 C 1.38836 * 119.96755 * 0.27817 * 7 6 5 25 25 C 1.38102 * 119.98654 * 359.44260 * 24 7 6 26 26 H 1.08995 * 109.46971 * 59.99504 * 1 2 3 27 27 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46873 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.46873 * 239.99989 * 2 1 3 30 30 H 1.09007 * 109.47347 * 120.00509 * 2 1 3 31 31 H 1.07997 * 119.99142 * 359.97438 * 5 4 3 32 32 H 1.08005 * 120.00249 * 179.97438 * 6 5 4 33 33 H 0.96993 * 120.00216 * 213.27098 * 8 7 6 34 34 H 0.97002 * 119.99598 * 0.02562 * 11 9 8 35 35 H 0.97007 * 119.99837 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47586 * 54.99656 * 22 12 11 37 37 H 1.09005 * 109.47437 * 175.00336 * 22 12 11 38 38 H 1.09001 * 109.47159 * 299.99461 * 23 22 12 39 39 H 1.08997 * 109.47369 * 60.00398 * 23 22 12 40 40 H 1.09008 * 109.46946 * 180.02562 * 23 22 12 41 41 H 1.08000 * 120.00711 * 179.70364 * 24 7 6 42 42 H 1.08002 * 119.99143 * 180.27866 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 3.8844 2.8072 0.0000 6 6 5.2534 2.9888 -0.0011 7 6 6.0994 1.8880 -0.0022 8 7 7.4888 2.0715 -0.0027 9 6 8.0294 3.1269 0.6380 10 8 7.3228 3.8653 1.2968 11 7 9.3531 3.3638 0.5485 12 6 9.9406 4.5113 1.2444 13 1 9.2342 5.3414 1.2367 14 6 11.2104 4.9258 0.5465 15 1 11.5463 4.3880 -0.3277 16 6 11.9437 5.9910 1.0248 17 7 11.5348 6.6455 2.0896 18 14 13.5179 6.5043 0.1601 19 1 13.2029 7.5109 -0.8852 20 1 14.4558 7.0944 1.1488 21 1 14.1465 5.3159 -0.4704 22 6 10.2566 4.1237 2.6903 23 6 8.9536 3.8229 3.4340 24 6 5.5683 0.6053 -0.0080 25 6 4.1991 0.4250 -0.0011 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2263 3.6635 0.0004 32 1 5.6659 3.9870 -0.0011 33 1 8.0614 1.4391 -0.4642 34 1 9.9167 2.7750 0.0226 35 1 12.0505 7.3952 2.4259 36 1 10.8923 3.2383 2.6986 37 1 10.7740 4.9472 3.1825 38 1 8.3179 4.7083 3.4258 39 1 8.4362 2.9994 2.9419 40 1 9.1787 3.5472 4.4643 41 1 6.2258 -0.2515 -0.0137 42 1 3.7859 -0.5728 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155398149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:12 Heat of formation + Delta-G solvation = -66.704150 kcal Electronic energy + Delta-G solvation = -22984.125970 eV Core-core repulsion = 19542.651589 eV Total energy + Delta-G solvation = -3441.474381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66129 -40.68446 -38.66890 -36.95375 -35.35313 -34.25740 -32.85335 -32.39790 -31.81981 -29.59613 -28.45722 -25.23215 -24.91498 -23.44122 -23.13500 -21.84656 -21.28681 -19.73061 -19.22926 -18.58125 -17.81436 -17.03825 -16.95494 -16.77168 -16.34676 -15.93408 -15.38781 -15.03440 -14.64542 -14.54135 -14.44261 -14.22149 -13.99948 -13.76145 -13.50514 -13.18557 -13.14430 -13.05176 -12.85604 -12.68459 -12.61664 -12.15414 -12.05028 -11.86464 -11.67273 -11.56188 -11.11066 -11.00781 -10.71870 -10.52404 -9.95145 -9.65222 -8.58518 -8.14722 -6.31707 0.37781 0.41786 1.46149 1.46345 1.56836 1.84504 2.25470 2.33878 2.43833 2.88491 3.14939 3.51499 3.86455 3.96191 4.12241 4.20064 4.32713 4.43557 4.44246 4.51133 4.59063 4.63723 4.74028 4.79730 4.99024 5.01830 5.06710 5.08933 5.23589 5.24525 5.36597 5.38995 5.46161 5.53196 5.58567 5.64182 5.78850 5.89286 5.96155 6.18697 6.33543 6.53145 6.76629 7.30475 7.37069 7.76934 8.90726 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039761 B = 0.002820 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.041014 B = 9927.217166 C =10053.934935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.101 3.899 5 C -0.146 4.146 6 C -0.103 4.103 7 C 0.123 3.877 8 N -0.677 5.677 9 C 0.691 3.309 10 O -0.614 6.614 11 N -0.715 5.715 12 C 0.296 3.704 13 H -0.001 1.001 14 C -0.546 4.546 15 H 0.072 0.928 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 0.971 3.029 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.260 1.260 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.103 4.103 25 C -0.181 4.181 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.420 0.580 34 H 0.402 0.598 35 H 0.265 0.735 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.159 0.841 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 -17.607 -6.162 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.056 3.944 5 C -0.165 4.165 6 C -0.123 4.123 7 C 0.028 3.972 8 N -0.327 5.327 9 C 0.392 3.608 10 O -0.495 6.495 11 N -0.368 5.368 12 C 0.192 3.808 13 H 0.016 0.984 14 C -0.585 4.585 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.553 5.553 18 Si 0.795 3.205 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.184 1.184 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.124 4.124 25 C -0.200 4.200 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.258 0.742 34 H 0.236 0.764 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.177 0.823 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.350 -16.604 -5.446 23.259 hybrid contribution 1.401 0.311 -0.520 1.527 sum -13.949 -16.293 -5.966 22.263 Atomic orbital electron populations 1.21810 0.91757 1.04151 1.02994 1.23085 0.96746 0.80808 1.02483 1.86065 1.18544 1.31416 1.88982 1.18981 0.82940 0.93965 0.98556 1.20344 0.94152 0.95960 1.06027 1.20936 0.92637 0.98913 0.99845 1.17650 0.82098 0.94163 1.03268 1.42484 1.05566 1.28194 1.56456 1.16204 0.83028 0.81630 0.79946 1.90892 1.61407 1.50585 1.46575 1.45430 1.05538 1.31929 1.53905 1.18264 0.91479 0.82052 0.88968 0.98356 1.21563 1.07796 1.15799 1.13295 0.90947 1.25761 1.01240 0.95955 0.95551 1.70053 1.40372 1.21035 1.23831 0.85369 0.78540 0.78620 0.77927 1.20563 1.21035 1.18401 1.21802 0.96020 1.00308 0.97855 1.21638 0.97730 0.99858 0.98489 1.20930 0.95468 0.94999 1.00989 1.21292 0.92979 0.98895 1.06787 0.91955 0.88018 0.92233 0.90625 0.91088 0.85173 0.86946 0.74230 0.76355 0.92610 0.93983 0.90958 0.95710 0.94021 0.93855 0.82335 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.04 0.59 5.46 71.98 0.39 0.99 16 3 O -0.34 -7.63 10.14 -93.31 -0.95 -8.57 16 4 C 0.10 2.54 6.69 22.50 0.15 2.69 16 5 C -0.15 -4.31 9.98 22.35 0.22 -4.09 16 6 C -0.10 -3.46 8.65 22.38 0.19 -3.27 16 7 C 0.12 3.64 6.28 38.10 0.24 3.88 16 8 N -0.68 -20.09 5.36 -317.06 -1.70 -21.78 16 9 C 0.69 27.70 6.87 179.05 1.23 28.93 16 10 O -0.61 -29.78 11.16 -4.02 -0.04 -29.82 16 11 N -0.72 -29.18 5.03 -461.41 -2.32 -31.50 16 12 C 0.30 15.13 2.24 44.25 0.10 15.23 16 13 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 14 C -0.55 -28.59 8.73 25.60 0.22 -28.36 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.02 0.81 5.29 84.66 0.45 1.25 16 17 N -0.91 -52.24 11.29 21.45 0.24 -51.99 16 18 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 23 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 24 C -0.10 -2.25 9.96 22.38 0.22 -2.03 16 25 C -0.18 -3.66 9.03 22.35 0.20 -3.46 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 30 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 31 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.11 4.50 6.41 -2.91 -0.02 4.48 16 33 H 0.42 8.95 8.83 -92.71 -0.82 8.13 16 34 H 0.40 13.56 8.56 -92.71 -0.79 12.77 16 35 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16 38 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 39 H 0.04 1.88 5.64 -2.39 -0.01 1.86 16 40 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.16 2.10 6.29 -2.91 -0.02 2.08 16 Total: -1.00 -69.39 342.55 1.84 -67.55 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.57 Total: 32.03 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.14 Total: 0.22 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.78 Total: -105.28 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.99 Total: -38.39 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -69.39 1.84 -67.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155398149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.844 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds