Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47579 * 2 1 4 4 H 1.08998 * 109.47357 * 55.64108 * 3 2 1 5 5 C 1.50693 * 109.47550 * 175.64769 * 3 2 1 6 6 H 1.08000 * 120.00653 * 114.16646 * 5 3 2 7 7 C 1.37878 * 120.00036 * 294.17200 * 5 3 2 8 8 N 1.31511 * 120.00216 * 155.67896 * 7 5 3 9 9 Si 1.86799 * 119.99679 * 335.68206 * 7 5 3 10 10 H 1.48501 * 109.47152 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47113 * 300.00033 * 9 7 5 12 12 H 1.48494 * 109.47235 * 60.00019 * 9 7 5 13 13 N 1.46507 * 109.46934 * 295.64415 * 3 2 1 14 14 C 1.34774 * 119.99722 * 84.99337 * 13 3 2 15 15 O 1.21594 * 120.00489 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99801 * 180.02562 * 14 13 3 17 17 C 1.40174 * 119.99646 * 184.67513 * 16 14 13 18 18 C 1.38706 * 120.09119 * 19.62464 * 17 16 14 19 19 C 1.38206 * 119.98523 * 179.78861 * 18 17 16 20 20 C 1.50699 * 119.91949 * 180.25592 * 19 18 17 21 21 C 1.38270 * 120.15857 * 0.48938 * 19 18 17 22 22 C 1.38252 * 120.18020 * 359.74758 * 21 19 18 23 23 C 1.38543 * 120.01310 * 0.02562 * 22 21 19 24 24 O 1.35975 * 120.08310 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99893 * 0.02693 * 24 23 22 26 26 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46855 * 300.00429 * 1 2 3 28 28 H 1.08996 * 109.47128 * 60.00029 * 1 2 3 29 29 H 1.09007 * 109.47338 * 239.99337 * 2 1 3 30 30 H 1.09002 * 109.47541 * 119.99870 * 2 1 3 31 31 H 0.97003 * 120.00327 * 354.92037 * 8 7 5 32 32 H 0.96999 * 120.00531 * 265.00378 * 13 3 2 33 33 H 0.96998 * 120.00310 * 4.67239 * 16 14 13 34 34 H 1.07999 * 120.00382 * 0.02562 * 18 17 16 35 35 H 1.09001 * 109.46584 * 270.23406 * 20 19 18 36 36 H 1.08999 * 109.47294 * 30.23209 * 20 19 18 37 37 H 1.08998 * 109.46780 * 150.23657 * 20 19 18 38 38 H 1.08006 * 119.90946 * 179.72067 * 21 19 18 39 39 H 1.08000 * 119.99329 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.47005 * 299.99795 * 25 24 23 41 41 H 1.08998 * 109.47531 * 59.99990 * 25 24 23 42 42 H 1.09001 * 109.47017 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6144 1.9784 0.8483 5 6 3.5431 1.4438 0.1078 6 1 4.1433 1.8055 -0.7140 7 6 4.1524 0.9832 1.2557 8 7 5.3869 0.5321 1.2094 9 14 3.2243 0.9998 2.8767 10 1 4.0944 0.4576 3.9510 11 1 2.8366 2.3938 3.2109 12 1 2.0041 0.1619 2.7572 13 7 1.6393 2.1021 -1.2452 14 6 0.4208 2.6694 -1.3453 15 8 -0.3457 2.6341 -0.4021 16 7 0.0519 3.2758 -2.4911 17 6 -1.1747 3.9503 -2.5635 18 6 -1.8175 4.3513 -1.4016 19 6 -3.0247 5.0201 -1.4757 20 6 -3.7189 5.4602 -0.2126 21 6 -3.5994 5.2821 -2.7057 22 6 -2.9669 4.8811 -3.8678 23 6 -1.7543 4.2144 -3.8023 24 8 -1.1313 3.8189 -4.9444 25 6 -1.7838 4.1243 -6.1785 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5140 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8432 0.4543 0.3570 32 1 2.2507 2.1305 -1.9977 33 1 0.6352 3.2455 -3.2655 34 1 -1.3728 4.1444 -0.4394 35 1 -4.3826 4.6673 0.1323 36 1 -2.9754 5.6717 0.5559 37 1 -4.3009 6.3599 -0.4125 38 1 -4.5451 5.8010 -2.7587 39 1 -3.4183 5.0877 -4.8270 40 1 -2.7637 3.6474 -6.1991 41 1 -1.9033 5.2040 -6.2688 42 1 -1.1824 3.7542 -7.0088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155490582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = -43.303057 kcal Electronic energy + Delta-G solvation = -23754.022065 eV Core-core repulsion = 20313.562432 eV Total energy + Delta-G solvation = -3440.459633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69947 -39.34600 -37.57221 -35.69750 -34.34335 -32.51269 -31.74516 -31.36261 -29.41203 -27.95242 -27.04539 -25.89986 -23.13397 -22.28953 -21.32495 -20.62259 -19.67858 -18.53461 -18.11199 -17.19407 -16.64755 -16.03310 -15.78724 -15.20213 -14.80204 -14.29333 -14.05132 -14.03597 -13.63270 -13.58112 -13.28915 -12.83073 -12.55821 -12.41111 -12.26110 -12.21034 -11.95186 -11.70547 -11.51370 -11.26890 -10.94835 -10.80874 -10.67160 -10.42727 -10.25306 -9.84553 -9.69028 -9.34842 -9.11761 -8.38033 -8.27722 -8.12484 -7.49216 -6.60632 -4.20532 1.43879 1.46295 3.04206 3.23821 3.42028 3.46933 3.55681 3.62984 4.00578 4.44628 4.72152 4.78977 4.87788 4.97328 4.99962 5.09883 5.17980 5.28480 5.37301 5.47151 5.69674 5.76684 5.97068 6.02330 6.11817 6.13668 6.17981 6.29798 6.32411 6.61060 6.68955 6.78218 6.84745 6.96151 6.99306 7.06853 7.24314 7.40790 7.45287 7.52660 7.82147 8.25090 8.63411 8.74022 9.12824 9.45156 10.77800 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.004215 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.193913 B = 6641.108460 C = 7422.254187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.267 3.733 4 H 0.042 0.958 5 C -0.626 4.626 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.888 5.888 9 Si 1.031 2.969 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.695 3.305 15 O -0.578 6.578 16 N -0.683 5.683 17 C 0.164 3.836 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.183 4.183 23 C 0.074 3.926 24 O -0.322 6.322 25 C 0.032 3.968 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.271 0.729 32 H 0.390 0.610 33 H 0.407 0.593 34 H 0.169 0.831 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 8.379 -11.635 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.163 3.837 4 H 0.060 0.940 5 C -0.664 4.664 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.520 5.520 9 Si 0.858 3.142 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.362 5.362 14 C 0.395 3.605 15 O -0.457 6.457 16 N -0.329 5.329 17 C 0.066 3.934 18 C -0.130 4.130 19 C -0.100 4.100 20 C -0.164 4.164 21 C -0.136 4.136 22 C -0.202 4.202 23 C 0.027 3.973 24 O -0.236 6.236 25 C -0.063 4.063 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.223 0.777 33 H 0.242 0.758 34 H 0.186 0.814 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.478 7.847 -9.115 20.401 hybrid contribution 0.247 0.385 -2.834 2.871 sum -16.231 8.232 -11.950 21.772 Atomic orbital electron populations 1.21864 0.97294 0.98720 1.02031 1.22271 0.93814 0.99800 1.01396 1.18952 0.95290 0.88069 0.81401 0.94008 1.22003 0.89593 1.49571 1.05216 0.91958 1.25611 0.96385 0.91732 1.02263 1.70870 1.13521 1.37737 1.29885 0.84215 0.75991 0.77693 0.76330 1.20885 1.20623 1.19796 1.45589 1.13267 1.58422 1.18917 1.16095 0.83381 0.78602 0.82376 1.90763 1.52256 1.64710 1.38011 1.42659 1.19571 1.55585 1.15112 1.16972 0.87622 0.97781 0.90989 1.21674 0.95252 0.96833 0.99264 1.19770 0.95558 0.99516 0.95115 1.20699 1.00148 1.00768 0.94773 1.20698 0.99892 1.01613 0.91421 1.20888 0.95600 1.04288 0.99437 1.18597 0.93015 1.00678 0.85014 1.85992 1.48122 1.76691 1.12765 1.22977 0.98463 1.00661 0.84193 0.95275 0.92888 0.93352 0.93210 0.91781 0.91913 0.77690 0.75806 0.81388 0.91380 0.91435 0.91990 0.86242 0.85578 0.92871 0.92879 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.50 37.16 0.32 -2.62 16 2 C -0.13 -3.02 5.36 -26.73 -0.14 -3.16 16 3 C 0.27 6.34 1.85 -69.08 -0.13 6.21 16 4 H 0.04 1.08 6.13 -51.93 -0.32 0.76 16 5 C -0.63 -16.79 8.93 -34.44 -0.31 -17.10 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 7 C 0.05 1.34 5.20 -17.82 -0.09 1.25 16 8 N -0.89 -26.14 13.70 55.43 0.76 -25.38 16 9 Si 1.03 24.88 26.50 -169.99 -4.51 20.38 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.22 6.19 56.52 0.35 -5.87 16 13 N -0.71 -14.46 5.02 -59.81 -0.30 -14.76 16 14 C 0.69 13.61 6.96 -86.92 -0.60 13.01 16 15 O -0.58 -12.62 10.35 5.28 0.05 -12.56 16 16 N -0.68 -11.18 5.34 -14.10 -0.08 -11.26 16 17 C 0.16 2.62 6.52 -83.48 -0.54 2.08 16 18 C -0.11 -1.78 8.44 -39.42 -0.33 -2.11 16 19 C -0.10 -1.32 5.88 -104.62 -0.62 -1.94 16 20 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 21 C -0.12 -1.37 9.69 -39.56 -0.38 -1.75 16 22 C -0.18 -2.14 9.04 -39.46 -0.36 -2.49 16 23 C 0.07 1.02 6.70 -39.08 -0.26 0.76 16 24 O -0.32 -3.97 9.85 -19.66 -0.19 -4.16 16 25 C 0.03 0.25 9.81 101.05 0.99 1.25 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.14 7.81 -51.93 -0.41 0.73 16 28 H 0.05 1.01 5.66 -51.93 -0.29 0.72 16 29 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.06 1.51 5.59 -51.93 -0.29 1.22 16 31 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 32 H 0.39 7.12 8.54 -40.82 -0.35 6.77 16 33 H 0.41 5.74 8.27 -40.82 -0.34 5.40 16 34 H 0.17 3.10 5.38 -52.49 -0.28 2.82 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.13 1.12 6.30 -52.49 -0.33 0.78 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 41 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -31.01 336.54 -7.27 -38.28 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.98 Total: 11.83 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.10 Total: -7.43 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.38 Total: -51.40 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.14 Total: -16.72 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.51 Total: 20.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.01 -7.27 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155490582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.026 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds