Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47579 * 2 1 4 4 H 1.08998 * 109.47357 * 55.64108 * 3 2 1 5 5 C 1.50693 * 109.47550 * 175.64769 * 3 2 1 6 6 H 1.08000 * 120.00653 * 114.16646 * 5 3 2 7 7 C 1.37878 * 120.00036 * 294.17200 * 5 3 2 8 8 N 1.31511 * 120.00216 * 155.67896 * 7 5 3 9 9 Si 1.86799 * 119.99679 * 335.68206 * 7 5 3 10 10 H 1.48501 * 109.47152 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47113 * 300.00033 * 9 7 5 12 12 H 1.48494 * 109.47235 * 60.00019 * 9 7 5 13 13 N 1.46507 * 109.46934 * 295.64415 * 3 2 1 14 14 C 1.34774 * 119.99722 * 84.99337 * 13 3 2 15 15 O 1.21594 * 120.00489 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99801 * 180.02562 * 14 13 3 17 17 C 1.40174 * 119.99646 * 184.67513 * 16 14 13 18 18 C 1.38706 * 120.09119 * 19.62464 * 17 16 14 19 19 C 1.38206 * 119.98523 * 179.78861 * 18 17 16 20 20 C 1.50699 * 119.91949 * 180.25592 * 19 18 17 21 21 C 1.38270 * 120.15857 * 0.48938 * 19 18 17 22 22 C 1.38252 * 120.18020 * 359.74758 * 21 19 18 23 23 C 1.38543 * 120.01310 * 0.02562 * 22 21 19 24 24 O 1.35975 * 120.08310 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99893 * 0.02693 * 24 23 22 26 26 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46855 * 300.00429 * 1 2 3 28 28 H 1.08996 * 109.47128 * 60.00029 * 1 2 3 29 29 H 1.09007 * 109.47338 * 239.99337 * 2 1 3 30 30 H 1.09002 * 109.47541 * 119.99870 * 2 1 3 31 31 H 0.97003 * 120.00327 * 354.92037 * 8 7 5 32 32 H 0.96999 * 120.00531 * 265.00378 * 13 3 2 33 33 H 0.96998 * 120.00310 * 4.67239 * 16 14 13 34 34 H 1.07999 * 120.00382 * 0.02562 * 18 17 16 35 35 H 1.09001 * 109.46584 * 270.23406 * 20 19 18 36 36 H 1.08999 * 109.47294 * 30.23209 * 20 19 18 37 37 H 1.08998 * 109.46780 * 150.23657 * 20 19 18 38 38 H 1.08006 * 119.90946 * 179.72067 * 21 19 18 39 39 H 1.08000 * 119.99329 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.47005 * 299.99795 * 25 24 23 41 41 H 1.08998 * 109.47531 * 59.99990 * 25 24 23 42 42 H 1.09001 * 109.47017 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6144 1.9784 0.8483 5 6 3.5431 1.4438 0.1078 6 1 4.1433 1.8055 -0.7140 7 6 4.1524 0.9832 1.2557 8 7 5.3869 0.5321 1.2094 9 14 3.2243 0.9998 2.8767 10 1 4.0944 0.4576 3.9510 11 1 2.8366 2.3938 3.2109 12 1 2.0041 0.1619 2.7572 13 7 1.6393 2.1021 -1.2452 14 6 0.4208 2.6694 -1.3453 15 8 -0.3457 2.6341 -0.4021 16 7 0.0519 3.2758 -2.4911 17 6 -1.1747 3.9503 -2.5635 18 6 -1.8175 4.3513 -1.4016 19 6 -3.0247 5.0201 -1.4757 20 6 -3.7189 5.4602 -0.2126 21 6 -3.5994 5.2821 -2.7057 22 6 -2.9669 4.8811 -3.8678 23 6 -1.7543 4.2144 -3.8023 24 8 -1.1313 3.8189 -4.9444 25 6 -1.7838 4.1243 -6.1785 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5140 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8432 0.4543 0.3570 32 1 2.2507 2.1305 -1.9977 33 1 0.6352 3.2455 -3.2655 34 1 -1.3728 4.1444 -0.4394 35 1 -4.3826 4.6673 0.1323 36 1 -2.9754 5.6717 0.5559 37 1 -4.3009 6.3599 -0.4125 38 1 -4.5451 5.8010 -2.7587 39 1 -3.4183 5.0877 -4.8270 40 1 -2.7637 3.6474 -6.1991 41 1 -1.9033 5.2040 -6.2688 42 1 -1.1824 3.7542 -7.0088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155490582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = -64.420599 kcal Electronic energy + Delta-G solvation = -23754.937791 eV Core-core repulsion = 20313.562432 eV Total energy + Delta-G solvation = -3441.375358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92480 -40.60802 -38.57526 -37.34199 -35.78088 -34.51812 -33.19322 -32.54494 -30.64532 -28.93002 -28.69001 -26.76176 -24.61502 -23.96125 -22.48840 -21.97813 -21.43299 -20.18647 -19.33164 -18.69690 -17.96167 -17.23208 -16.71107 -16.61802 -16.33168 -15.61707 -15.28410 -15.15134 -15.02047 -14.70955 -14.57996 -14.47408 -14.27050 -14.20719 -13.62059 -13.27264 -13.11987 -12.78304 -12.65304 -12.53042 -12.43453 -12.31249 -12.10414 -11.87291 -11.74698 -11.57191 -11.34713 -11.20673 -10.79189 -10.43315 -9.87255 -9.40312 -8.82297 -8.59492 -6.41406 0.38212 0.44649 1.48185 1.50651 1.67432 1.74562 2.14178 2.35637 2.43570 2.86776 2.94830 3.31840 3.89631 4.00604 4.18578 4.31349 4.35154 4.40040 4.44415 4.48448 4.50775 4.53769 4.76684 4.78463 4.83022 4.88239 4.96296 5.04470 5.11108 5.19912 5.21952 5.30222 5.33962 5.52569 5.57762 5.62653 5.65849 5.78830 5.94741 6.02609 6.15592 6.47206 6.54410 7.11278 7.28127 7.59735 8.56131 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.004215 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.193913 B = 6641.108460 C = 7422.254187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.273 3.727 4 H 0.025 0.975 5 C -0.624 4.624 6 H 0.041 0.959 7 C 0.007 3.993 8 N -0.917 5.917 9 Si 1.064 2.936 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.252 1.252 13 N -0.714 5.714 14 C 0.696 3.304 15 O -0.602 6.602 16 N -0.672 5.672 17 C 0.128 3.872 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.106 4.106 21 C -0.106 4.106 22 C -0.178 4.178 23 C 0.075 3.925 24 O -0.339 6.339 25 C 0.021 3.979 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.261 0.739 32 H 0.399 0.601 33 H 0.416 0.584 34 H 0.138 0.862 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 9.253 -13.142 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.168 3.832 4 H 0.043 0.957 5 C -0.662 4.662 6 H 0.059 0.941 7 C -0.196 4.196 8 N -0.551 5.551 9 Si 0.886 3.114 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.177 1.177 13 N -0.366 5.366 14 C 0.396 3.604 15 O -0.482 6.482 16 N -0.319 5.319 17 C 0.032 3.968 18 C -0.154 4.154 19 C -0.110 4.110 20 C -0.162 4.162 21 C -0.125 4.125 22 C -0.197 4.197 23 C 0.028 3.972 24 O -0.253 6.253 25 C -0.073 4.073 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.233 0.767 33 H 0.253 0.747 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.173 0.827 39 H 0.179 0.821 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.459 8.748 -10.686 23.861 hybrid contribution 1.101 0.216 -2.544 2.780 sum -18.358 8.964 -13.230 24.339 Atomic orbital electron populations 1.21716 0.95606 1.00042 1.01263 1.22159 0.95191 0.98492 1.01023 1.18635 0.93118 0.89068 0.82354 0.95748 1.22158 0.91276 1.48391 1.04357 0.94117 1.26684 0.96448 0.91260 1.05169 1.70962 1.14641 1.40129 1.29342 0.83778 0.75859 0.78428 0.73362 1.20598 1.19938 1.17663 1.45313 1.14115 1.58929 1.18230 1.16097 0.82738 0.78516 0.83000 1.90762 1.52802 1.65493 1.39165 1.42404 1.20208 1.55034 1.14224 1.17226 0.87806 0.99515 0.92296 1.21518 0.96890 0.98850 0.98183 1.20056 0.94745 0.99103 0.97061 1.20737 0.99993 1.02020 0.93496 1.21123 1.00705 1.00253 0.90451 1.21322 0.94532 1.02705 1.01097 1.18682 0.93468 1.00316 0.84767 1.85978 1.49008 1.76754 1.13580 1.23320 0.99281 1.01999 0.82672 0.92797 0.93914 0.93860 0.93001 0.92696 0.92972 0.76700 0.74747 0.84489 0.90949 0.92546 0.89298 0.82691 0.82114 0.91679 0.91341 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.50 71.98 0.61 -4.62 16 2 C -0.13 -5.80 5.36 30.59 0.16 -5.64 16 3 C 0.27 13.16 1.85 44.24 0.08 13.24 16 4 H 0.02 1.28 6.13 -2.39 -0.01 1.27 16 5 C -0.62 -34.19 8.93 25.60 0.23 -33.96 16 6 H 0.04 2.36 7.96 -2.91 -0.02 2.34 16 7 C 0.01 0.40 5.20 84.66 0.44 0.84 16 8 N -0.92 -55.13 13.70 21.45 0.29 -54.83 16 9 Si 1.06 50.45 26.50 68.60 1.82 52.27 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.25 -11.08 6.19 99.48 0.62 -10.47 16 13 N -0.71 -29.54 5.02 -461.41 -2.32 -31.86 16 14 C 0.70 27.78 6.96 179.05 1.25 29.02 16 15 O -0.60 -26.93 10.35 -4.01 -0.04 -26.97 16 16 N -0.67 -22.23 5.34 -316.78 -1.69 -23.92 16 17 C 0.13 4.06 6.52 38.17 0.25 4.31 16 18 C -0.13 -4.38 8.44 22.37 0.19 -4.19 16 19 C -0.11 -2.75 5.88 -19.86 -0.12 -2.87 16 20 C -0.11 -2.13 10.01 71.24 0.71 -1.42 16 21 C -0.11 -2.12 9.69 22.28 0.22 -1.90 16 22 C -0.18 -3.52 9.04 22.35 0.20 -3.32 16 23 C 0.08 1.92 6.70 22.60 0.15 2.08 16 24 O -0.34 -7.64 9.85 -93.27 -0.92 -8.56 16 25 C 0.02 0.27 9.81 113.37 1.11 1.38 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.80 7.81 -2.39 -0.02 1.78 16 28 H 0.04 1.79 5.66 -2.39 -0.01 1.77 16 29 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.05 2.54 5.59 -2.39 -0.01 2.53 16 31 H 0.26 15.69 8.73 -92.71 -0.81 14.88 16 32 H 0.40 14.86 8.54 -92.71 -0.79 14.07 16 33 H 0.42 11.79 8.27 -92.71 -0.77 11.02 16 34 H 0.14 5.33 5.38 -2.91 -0.02 5.32 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.24 8.09 -2.39 -0.02 1.22 16 37 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 38 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.16 2.02 6.30 -2.91 -0.02 2.00 16 40 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 41 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.56 336.54 2.00 -66.55 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.63 Total: 34.39 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.49 Total: -7.06 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -3.71 Total: -110.62 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.96 Total: -35.54 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 1.82 Total: 52.27 kcal Total: -68.56 2.00 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155490582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.133 kcal (2) G-P(sol) polarization free energy of solvation -68.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds