Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46958 * 2 1 4 4 C 1.35994 * 116.99642 * 180.02562 * 3 2 1 5 5 C 1.38543 * 120.08021 * 0.27322 * 4 3 2 6 6 C 1.38250 * 120.01353 * 180.25620 * 5 4 3 7 7 C 1.38271 * 120.17617 * 359.74578 * 6 5 4 8 8 C 1.38211 * 120.16011 * 359.97438 * 7 6 5 9 9 C 1.38709 * 119.98510 * 0.02577 * 8 7 6 10 10 N 1.40164 * 120.08751 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00018 * 34.64849 * 10 9 8 12 12 O 1.21590 * 119.99904 * 355.53707 * 11 10 9 13 13 N 1.34781 * 119.99982 * 175.54415 * 11 10 9 14 14 C 1.46502 * 119.99711 * 179.97438 * 13 11 10 15 15 H 1.08991 * 109.46929 * 324.99543 * 14 13 11 16 16 C 1.50699 * 109.46612 * 204.99457 * 14 13 11 17 17 H 1.08005 * 120.00198 * 359.73187 * 16 14 13 18 18 C 1.37877 * 119.99814 * 179.97438 * 16 14 13 19 19 N 1.31520 * 119.99930 * 359.72956 * 18 16 14 20 20 Si 1.86800 * 120.00351 * 179.72687 * 18 16 14 21 21 H 1.48499 * 109.47050 * 59.99811 * 20 18 16 22 22 H 1.48499 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46852 * 300.00731 * 20 18 16 24 24 C 1.53001 * 109.47160 * 84.99925 * 14 13 11 25 25 C 1.53001 * 109.46688 * 294.99685 * 24 14 13 26 26 H 1.09001 * 109.46944 * 59.99734 * 1 2 3 27 27 H 1.08996 * 109.47607 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47245 * 300.00144 * 1 2 3 29 29 H 1.08994 * 109.47038 * 239.99866 * 2 1 3 30 30 H 1.09001 * 109.46944 * 120.00266 * 2 1 3 31 31 H 1.08001 * 119.99478 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.91756 * 179.77228 * 6 5 4 33 33 H 1.07994 * 119.92222 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.00759 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99989 * 214.64528 * 10 9 8 36 36 H 0.96992 * 119.99766 * 359.97438 * 13 11 10 37 37 H 0.97002 * 119.99843 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.46808 * 54.99642 * 24 14 13 39 39 H 1.08992 * 109.46849 * 174.99741 * 24 14 13 40 40 H 1.09002 * 109.47481 * 60.00436 * 25 24 14 41 41 H 1.08999 * 109.46592 * 180.02562 * 25 24 14 42 42 H 1.08993 * 109.47045 * 299.99768 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 4.1999 0.4279 -0.0068 6 6 5.5703 0.6105 -0.0020 7 6 6.1013 1.8872 0.0038 8 6 5.2646 2.9873 0.0042 9 6 3.8887 2.8117 -0.0006 10 7 3.0382 3.9258 0.0003 11 6 3.3945 5.0462 -0.6586 12 8 4.4879 5.1200 -1.1853 13 7 2.5389 6.0849 -0.7335 14 6 2.9265 7.3030 -1.4493 15 1 3.9930 7.4812 -1.3121 16 6 2.1477 8.4736 -0.9068 17 1 1.4322 8.3244 -0.1117 18 6 2.3451 9.7343 -1.4290 19 7 3.2168 9.9161 -2.3969 20 14 1.3743 11.1841 -0.7619 21 1 1.6600 11.3469 0.6862 22 1 1.7681 12.4191 -1.4866 23 1 -0.0775 10.9388 -0.9554 24 6 2.6247 7.1365 -2.9399 25 6 3.5077 6.0289 -3.5183 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.7884 -0.5706 -0.0116 32 1 6.2279 -0.2461 -0.0031 33 1 7.1724 2.0251 0.0071 34 1 5.6820 3.9833 0.0082 35 1 2.1930 3.8904 0.4752 36 1 1.6666 6.0260 -0.3135 37 1 3.3554 10.8030 -2.7645 38 1 1.5758 6.8706 -3.0707 39 1 2.8297 8.0728 -3.4589 40 1 3.3027 5.0925 -2.9993 41 1 3.2930 5.9106 -4.5804 42 1 4.5565 6.2948 -3.3874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155521316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = -45.367917 kcal Electronic energy + Delta-G solvation = -23579.857887 eV Core-core repulsion = 20139.308715 eV Total energy + Delta-G solvation = -3440.549172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53151 -39.20264 -37.36789 -35.36835 -34.07049 -32.38497 -31.93378 -30.90147 -29.85273 -28.67210 -26.74671 -24.25385 -23.19096 -22.19535 -21.81371 -20.42015 -19.46149 -18.43478 -17.96435 -17.04466 -16.22779 -15.98817 -15.63033 -15.10970 -14.75329 -14.65288 -14.17330 -13.84110 -13.55491 -13.44769 -13.09218 -12.78875 -12.62228 -12.36601 -11.98539 -11.89646 -11.54874 -11.48931 -11.23364 -11.10689 -10.95866 -10.85330 -10.80712 -10.29509 -10.14638 -9.99582 -9.55338 -9.26145 -9.00896 -8.47954 -8.43076 -7.89447 -7.49648 -6.10241 -4.19398 1.47010 1.53101 3.07505 3.26908 3.29046 3.32501 3.36954 3.74256 4.10918 4.34365 4.71161 4.72369 4.91623 4.99338 5.03004 5.06855 5.21179 5.26368 5.40147 5.54703 5.57124 5.74926 5.81787 6.00918 6.27440 6.37783 6.45556 6.53605 6.64520 6.71391 6.81398 7.02434 7.08738 7.17424 7.40568 7.42745 7.49444 7.53280 7.67123 7.90736 8.04183 8.21669 8.77420 8.90213 9.31656 9.49752 10.95133 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.003802 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.707775 B = 7361.897601 C = 8035.788854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.317 6.317 4 C 0.091 3.909 5 C -0.193 4.193 6 C -0.110 4.110 7 C -0.137 4.137 8 C -0.087 4.087 9 C 0.155 3.845 10 N -0.690 5.690 11 C 0.694 3.306 12 O -0.579 6.579 13 N -0.719 5.719 14 C 0.287 3.713 15 H 0.050 0.950 16 C -0.534 4.534 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.128 4.128 25 C -0.135 4.135 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.404 0.596 36 H 0.385 0.615 37 H 0.265 0.735 38 H 0.030 0.970 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.020 0.980 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -19.370 5.517 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.231 6.231 4 C 0.044 3.956 5 C -0.213 4.213 6 C -0.129 4.129 7 C -0.156 4.156 8 C -0.108 4.108 9 C 0.059 3.941 10 N -0.338 5.338 11 C 0.395 3.605 12 O -0.457 6.457 13 N -0.370 5.370 14 C 0.185 3.815 15 H 0.068 0.932 16 C -0.573 4.573 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.167 4.167 25 C -0.192 4.192 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.238 0.762 36 H 0.217 0.783 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.117 0.883 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.140 -18.859 4.854 19.507 hybrid contribution -1.323 0.418 0.656 1.534 sum -2.463 -18.441 5.510 19.403 Atomic orbital electron populations 1.21772 0.92868 1.02648 1.03656 1.22713 0.95711 0.82232 1.01121 1.86041 1.18790 1.28957 1.89297 1.18745 0.82500 0.92760 1.01592 1.20940 0.94216 0.97119 1.08998 1.20830 0.94101 0.97241 1.00722 1.20986 0.99822 0.91974 1.02782 1.21353 0.90698 1.00983 0.97764 1.16902 0.90038 0.83287 1.03908 1.42661 1.23216 1.12268 1.55615 1.16089 0.85229 0.79947 0.79252 1.90865 1.21659 1.81367 1.51836 1.45813 1.17478 1.15856 1.57820 1.18705 0.97277 0.78096 0.87423 0.93180 1.21197 1.24010 0.92083 1.20007 0.92167 1.24871 0.95223 0.98720 0.94800 1.69894 1.33667 1.22943 1.25413 0.86512 0.80152 0.81407 0.79030 1.20207 1.21141 1.20205 1.21950 0.96397 0.99363 0.98989 1.21812 1.00772 0.99350 0.97313 0.91426 0.90570 0.91525 0.92237 0.92289 0.85695 0.86189 0.85828 0.83082 0.76154 0.78254 0.92511 0.95138 0.88337 0.94233 0.96083 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.08 9.69 -19.72 -0.19 -4.27 16 4 C 0.09 1.29 6.70 -39.08 -0.26 1.03 16 5 C -0.19 -2.31 9.04 -39.46 -0.36 -2.66 16 6 C -0.11 -1.28 10.04 -39.56 -0.40 -1.68 16 7 C -0.14 -1.82 10.04 -39.58 -0.40 -2.22 16 8 C -0.09 -1.42 8.70 -39.42 -0.34 -1.77 16 9 C 0.16 2.54 6.32 -83.48 -0.53 2.01 16 10 N -0.69 -11.60 5.20 -14.10 -0.07 -11.67 16 11 C 0.69 14.29 6.98 -86.92 -0.61 13.69 16 12 O -0.58 -13.60 10.89 5.29 0.06 -13.55 16 13 N -0.72 -15.14 5.03 -59.81 -0.30 -15.44 16 14 C 0.29 7.25 2.24 -69.08 -0.15 7.10 16 15 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 16 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 19 N -0.88 -24.69 11.31 55.43 0.63 -24.06 16 20 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 25 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 7.65 -51.93 -0.40 0.10 16 30 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 31 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.15 2.78 6.19 -52.49 -0.33 2.45 16 35 H 0.40 5.79 8.58 -40.82 -0.35 5.44 16 36 H 0.39 7.10 8.56 -40.82 -0.35 6.75 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 2.67 5.96 -51.93 -0.31 2.36 16 40 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -30.54 341.60 -8.49 -39.03 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.05 Total: 12.59 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.68 Total: -3.34 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.25 Total: -51.18 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.13 Total: -17.82 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.54 -8.49 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155521316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.338 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds