Wall clock time and date at job start Tue Mar 31 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46958 * 2 1 4 4 C 1.35994 * 116.99642 * 180.02562 * 3 2 1 5 5 C 1.38543 * 120.08021 * 0.27322 * 4 3 2 6 6 C 1.38250 * 120.01353 * 180.25620 * 5 4 3 7 7 C 1.38271 * 120.17617 * 359.74578 * 6 5 4 8 8 C 1.38211 * 120.16011 * 359.97438 * 7 6 5 9 9 C 1.38709 * 119.98510 * 0.02577 * 8 7 6 10 10 N 1.40164 * 120.08751 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00018 * 34.64849 * 10 9 8 12 12 O 1.21590 * 119.99904 * 355.53707 * 11 10 9 13 13 N 1.34781 * 119.99982 * 175.54415 * 11 10 9 14 14 C 1.46502 * 119.99711 * 179.97438 * 13 11 10 15 15 H 1.08991 * 109.46929 * 324.99543 * 14 13 11 16 16 C 1.50699 * 109.46612 * 204.99457 * 14 13 11 17 17 H 1.08005 * 120.00198 * 359.73187 * 16 14 13 18 18 C 1.37877 * 119.99814 * 179.97438 * 16 14 13 19 19 N 1.31520 * 119.99930 * 359.72956 * 18 16 14 20 20 Si 1.86800 * 120.00351 * 179.72687 * 18 16 14 21 21 H 1.48499 * 109.47050 * 59.99811 * 20 18 16 22 22 H 1.48499 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46852 * 300.00731 * 20 18 16 24 24 C 1.53001 * 109.47160 * 84.99925 * 14 13 11 25 25 C 1.53001 * 109.46688 * 294.99685 * 24 14 13 26 26 H 1.09001 * 109.46944 * 59.99734 * 1 2 3 27 27 H 1.08996 * 109.47607 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47245 * 300.00144 * 1 2 3 29 29 H 1.08994 * 109.47038 * 239.99866 * 2 1 3 30 30 H 1.09001 * 109.46944 * 120.00266 * 2 1 3 31 31 H 1.08001 * 119.99478 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.91756 * 179.77228 * 6 5 4 33 33 H 1.07994 * 119.92222 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.00759 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99989 * 214.64528 * 10 9 8 36 36 H 0.96992 * 119.99766 * 359.97438 * 13 11 10 37 37 H 0.97002 * 119.99843 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.46808 * 54.99642 * 24 14 13 39 39 H 1.08992 * 109.46849 * 174.99741 * 24 14 13 40 40 H 1.09002 * 109.47481 * 60.00436 * 25 24 14 41 41 H 1.08999 * 109.46592 * 180.02562 * 25 24 14 42 42 H 1.08993 * 109.47045 * 299.99768 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 4.1999 0.4279 -0.0068 6 6 5.5703 0.6105 -0.0020 7 6 6.1013 1.8872 0.0038 8 6 5.2646 2.9873 0.0042 9 6 3.8887 2.8117 -0.0006 10 7 3.0382 3.9258 0.0003 11 6 3.3945 5.0462 -0.6586 12 8 4.4879 5.1200 -1.1853 13 7 2.5389 6.0849 -0.7335 14 6 2.9265 7.3030 -1.4493 15 1 3.9930 7.4812 -1.3121 16 6 2.1477 8.4736 -0.9068 17 1 1.4322 8.3244 -0.1117 18 6 2.3451 9.7343 -1.4290 19 7 3.2168 9.9161 -2.3969 20 14 1.3743 11.1841 -0.7619 21 1 1.6600 11.3469 0.6862 22 1 1.7681 12.4191 -1.4866 23 1 -0.0775 10.9388 -0.9554 24 6 2.6247 7.1365 -2.9399 25 6 3.5077 6.0289 -3.5183 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.7884 -0.5706 -0.0116 32 1 6.2279 -0.2461 -0.0031 33 1 7.1724 2.0251 0.0071 34 1 5.6820 3.9833 0.0082 35 1 2.1930 3.8904 0.4752 36 1 1.6666 6.0260 -0.3135 37 1 3.3554 10.8030 -2.7645 38 1 1.5758 6.8706 -3.0707 39 1 2.8297 8.0728 -3.4589 40 1 3.3027 5.0925 -2.9993 41 1 3.2930 5.9106 -4.5804 42 1 4.5565 6.2948 -3.3874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155521316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:23 Heat of formation + Delta-G solvation = -65.087057 kcal Electronic energy + Delta-G solvation = -23580.712973 eV Core-core repulsion = 20139.308715 eV Total energy + Delta-G solvation = -3441.404258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77993 -40.55226 -38.45232 -37.10487 -35.57492 -34.29861 -32.86283 -32.54327 -30.95977 -29.90606 -28.63641 -25.24543 -24.94880 -23.52865 -22.79170 -21.94240 -21.31832 -19.79169 -19.30964 -18.31910 -17.78062 -17.09115 -16.95053 -16.72175 -16.24575 -16.02574 -15.62420 -15.09841 -14.95874 -14.57626 -14.46390 -14.19909 -13.95377 -13.51392 -13.35534 -13.17519 -12.96794 -12.90138 -12.81773 -12.64468 -12.52440 -12.18861 -12.08601 -11.95500 -11.62943 -11.59208 -11.28668 -11.06639 -10.85379 -10.52198 -9.71572 -9.48310 -8.71366 -8.14805 -6.32040 0.37999 0.48241 1.45736 1.47791 1.55414 1.81764 2.25132 2.26499 2.43959 2.90696 3.14484 3.48255 3.91172 4.04833 4.11249 4.26426 4.30012 4.42548 4.49519 4.52475 4.57310 4.60040 4.73601 4.79426 4.98152 4.98723 5.06431 5.15962 5.24433 5.30565 5.37136 5.45035 5.53593 5.59188 5.61233 5.69769 5.75934 5.87870 5.92928 6.17090 6.29699 6.50712 6.75391 7.26606 7.36247 7.74483 8.90581 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.003802 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.707775 B = 7361.897601 C = 8035.788854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.333 6.333 4 C 0.093 3.907 5 C -0.188 4.188 6 C -0.095 4.095 7 C -0.144 4.144 8 C -0.111 4.111 9 C 0.117 3.883 10 N -0.675 5.675 11 C 0.694 3.306 12 O -0.612 6.612 13 N -0.717 5.717 14 C 0.297 3.703 15 H 0.001 0.999 16 C -0.550 4.550 17 H 0.071 0.929 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.415 0.585 36 H 0.399 0.601 37 H 0.265 0.735 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -21.940 6.283 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.248 6.248 4 C 0.045 3.955 5 C -0.207 4.207 6 C -0.114 4.114 7 C -0.163 4.163 8 C -0.131 4.131 9 C 0.022 3.978 10 N -0.324 5.324 11 C 0.394 3.606 12 O -0.493 6.493 13 N -0.369 5.369 14 C 0.193 3.807 15 H 0.019 0.981 16 C -0.588 4.588 17 H 0.089 0.911 18 C -0.183 4.183 19 N -0.552 5.552 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.159 4.159 25 C -0.176 4.176 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.251 0.749 36 H 0.234 0.766 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.467 -21.492 5.656 22.361 hybrid contribution -0.879 1.046 0.446 1.437 sum -3.346 -20.447 6.102 21.598 Atomic orbital electron populations 1.21806 0.91846 1.04126 1.02930 1.23066 0.96584 0.80615 1.02475 1.86035 1.18074 1.31602 1.89068 1.18805 0.83535 0.92264 1.00870 1.21377 0.94149 0.97956 1.07255 1.21277 0.94667 0.97477 0.97987 1.21224 1.00463 0.92015 1.02550 1.21223 0.91510 1.00593 0.99823 1.17150 0.90050 0.83926 1.06679 1.42346 1.23731 1.11457 1.54834 1.16158 0.84578 0.80576 0.79251 1.90848 1.23008 1.82144 1.53281 1.45455 1.18285 1.15096 1.58044 1.18274 0.94382 0.79697 0.88306 0.98111 1.21532 1.24208 0.92698 1.20348 0.91124 1.25750 0.96091 1.01519 0.94944 1.70047 1.35051 1.23507 1.26597 0.85416 0.79039 0.77672 0.78295 1.19714 1.21108 1.18991 1.21798 0.96999 0.98627 0.98506 1.21625 0.98949 0.98506 0.98555 0.92576 0.87968 0.91838 0.91210 0.90403 0.82231 0.82318 0.84145 0.86445 0.74861 0.76621 0.92547 0.94286 0.90777 0.94387 0.93843 0.95412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.70 5.46 71.98 0.39 1.09 16 3 O -0.33 -7.99 9.69 -93.49 -0.91 -8.89 16 4 C 0.09 2.47 6.70 22.59 0.15 2.62 16 5 C -0.19 -3.85 9.04 22.35 0.20 -3.65 16 6 C -0.10 -1.90 10.04 22.28 0.22 -1.68 16 7 C -0.14 -3.68 10.04 22.27 0.22 -3.46 16 8 C -0.11 -3.73 8.70 22.38 0.19 -3.54 16 9 C 0.12 3.87 6.32 38.17 0.24 4.11 16 10 N -0.67 -23.29 5.20 -316.80 -1.65 -24.93 16 11 C 0.69 29.76 6.98 179.05 1.25 31.01 16 12 O -0.61 -30.51 10.89 -4.00 -0.04 -30.56 16 13 N -0.72 -31.12 5.03 -461.41 -2.32 -33.44 16 14 C 0.30 15.61 2.24 44.25 0.10 15.71 16 15 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 16 C -0.55 -29.46 8.73 25.60 0.22 -29.23 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 18 C 0.02 0.93 5.29 84.65 0.45 1.38 16 19 N -0.91 -52.61 11.31 21.45 0.24 -52.37 16 20 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 C -0.12 -6.11 5.45 30.60 0.17 -5.95 16 25 C -0.12 -5.66 8.51 71.98 0.61 -5.05 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.91 7.65 -2.39 -0.02 0.89 16 30 H 0.08 0.88 7.68 -2.39 -0.02 0.86 16 31 H 0.16 2.13 6.30 -2.91 -0.02 2.11 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.12 4.70 6.19 -2.91 -0.02 4.68 16 35 H 0.41 12.01 8.58 -92.71 -0.80 11.21 16 36 H 0.40 14.86 8.56 -92.71 -0.79 14.07 16 37 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 4.16 5.96 -2.39 -0.01 4.15 16 40 H 0.04 1.79 5.64 -2.39 -0.01 1.78 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 Total: -1.00 -69.07 341.60 1.98 -67.09 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.54 Total: 36.44 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.17 Total: 2.29 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -3.72 Total: -110.74 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.95 Total: -39.45 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.07 1.98 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155521316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.006 kcal (2) G-P(sol) polarization free energy of solvation -69.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds