Wall clock time and date at job start Tue Mar 31 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46979 * 2 1 4 4 C 1.35981 * 116.99999 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.08077 * 359.95750 * 4 3 2 6 6 C 1.38250 * 120.01341 * 180.02562 * 5 4 3 7 7 C 1.38267 * 120.17891 * 359.97438 * 6 5 4 8 8 C 1.38207 * 120.16007 * 0.03514 * 7 6 5 9 9 C 1.38714 * 119.98488 * 359.96994 * 8 7 6 10 10 N 1.40161 * 120.08749 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99976 * 332.81085 * 10 9 8 12 12 O 1.21588 * 120.00167 * 4.58115 * 11 10 9 13 13 N 1.34780 * 119.99938 * 184.57516 * 11 10 9 14 14 C 1.46504 * 119.99995 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.46731 * 35.00407 * 14 13 11 16 16 C 1.50700 * 109.46754 * 155.00312 * 14 13 11 17 17 H 1.07993 * 120.00093 * 26.75669 * 16 14 13 18 18 C 1.37881 * 119.99500 * 206.75357 * 16 14 13 19 19 N 1.31510 * 119.99679 * 185.30159 * 18 16 14 20 20 Si 1.86800 * 120.00201 * 5.30152 * 18 16 14 21 21 H 1.48506 * 109.46907 * 93.58809 * 20 18 16 22 22 H 1.48495 * 109.46989 * 213.58508 * 20 18 16 23 23 H 1.48496 * 109.47243 * 333.59027 * 20 18 16 24 24 C 1.53000 * 109.47094 * 275.00709 * 14 13 11 25 25 C 1.52997 * 109.47481 * 65.63719 * 24 14 13 26 26 H 1.08995 * 109.47114 * 60.00151 * 1 2 3 27 27 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47566 * 299.99770 * 1 2 3 29 29 H 1.08998 * 109.47212 * 239.99555 * 2 1 3 30 30 H 1.09002 * 109.46809 * 119.99673 * 2 1 3 31 31 H 1.08005 * 119.99741 * 0.04296 * 5 4 3 32 32 H 1.08004 * 119.90959 * 180.28123 * 6 5 4 33 33 H 1.08001 * 119.92098 * 180.02562 * 7 6 5 34 34 H 1.08001 * 120.00909 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00521 * 152.82091 * 10 9 8 36 36 H 0.97000 * 120.00125 * 0.02562 * 13 11 10 37 37 H 0.96998 * 120.00084 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.46923 * 185.63689 * 24 14 13 39 39 H 1.08994 * 109.46893 * 305.63083 * 24 14 13 40 40 H 1.09003 * 109.46530 * 299.99731 * 25 24 14 41 41 H 1.09000 * 109.47316 * 59.99405 * 25 24 14 42 42 H 1.09001 * 109.46984 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1999 0.4280 0.0020 6 6 5.5703 0.6108 0.0030 7 6 6.1012 1.8875 0.0022 8 6 5.2645 2.9875 0.0010 9 6 3.8885 2.8119 0.0000 10 7 3.0380 3.9259 -0.0018 11 6 3.4538 5.0921 0.5308 12 8 4.5944 5.2024 0.9372 13 7 2.6053 6.1360 0.6128 14 6 3.0574 7.4039 1.1912 15 1 4.1038 7.5679 0.9338 16 6 2.2224 8.5322 0.6429 17 1 1.2136 8.3435 0.3067 18 6 2.7464 9.8055 0.5706 19 7 1.9858 10.8089 0.1908 20 14 4.5365 10.1053 1.0121 21 1 5.3666 10.0441 -0.2178 22 1 4.6746 11.4457 1.6362 23 1 4.9915 9.0646 1.9686 24 6 2.9087 7.3519 2.7130 25 6 3.8622 6.3000 3.2831 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5706 0.0019 32 1 6.2279 -0.2459 -0.0005 33 1 7.1724 2.0255 0.0026 34 1 5.6818 3.9836 0.0007 35 1 2.1500 3.8576 -0.3862 36 1 1.6952 6.0480 0.2888 37 1 2.3545 11.7046 0.1396 38 1 3.1498 8.3276 3.1351 39 1 1.8824 7.0889 2.9690 40 1 3.6211 5.3243 2.8610 41 1 4.8886 6.5630 3.0271 42 1 3.7559 6.2627 4.3673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155521423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:27 Heat of formation + Delta-G solvation = -42.684946 kcal Electronic energy + Delta-G solvation = -23648.322992 eV Core-core repulsion = 20207.890162 eV Total energy + Delta-G solvation = -3440.432830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63609 -39.35069 -37.42589 -35.55154 -34.20819 -32.38867 -31.99013 -31.40959 -29.89751 -28.77813 -27.25598 -24.30328 -23.00260 -22.27493 -21.87525 -20.58794 -19.67888 -18.56027 -18.06639 -17.08925 -16.45963 -16.26808 -15.62299 -15.31029 -14.96400 -14.64255 -14.18716 -13.91766 -13.58684 -13.53669 -13.18491 -12.81667 -12.78503 -12.64322 -12.06779 -12.01067 -11.85095 -11.80531 -11.56477 -11.19875 -10.91974 -10.88722 -10.71725 -10.66450 -10.23907 -9.83950 -9.81118 -9.32915 -9.16199 -8.68845 -8.48120 -8.08836 -7.53807 -6.22125 -4.24927 1.43836 1.49165 3.00946 3.19080 3.28953 3.36202 3.44356 3.62393 4.02841 4.34187 4.68043 4.68933 4.79273 4.89943 4.99244 5.01740 5.15934 5.23052 5.36431 5.52099 5.54440 5.69242 5.79275 5.98559 6.11118 6.13939 6.21721 6.29018 6.33994 6.60785 6.66846 6.74515 6.83625 6.97246 7.00099 7.05363 7.23950 7.37694 7.45095 7.53725 7.60148 8.27502 8.68013 8.79772 9.15558 9.40368 10.89658 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.004106 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.581531 B = 6818.197851 C = 7554.894315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.318 6.318 4 C 0.088 3.912 5 C -0.191 4.191 6 C -0.113 4.113 7 C -0.135 4.135 8 C -0.100 4.100 9 C 0.156 3.844 10 N -0.685 5.685 11 C 0.695 3.305 12 O -0.582 6.582 13 N -0.713 5.713 14 C 0.255 3.745 15 H 0.052 0.948 16 C -0.532 4.532 17 H 0.078 0.922 18 C 0.082 3.918 19 N -0.890 5.890 20 Si 0.869 3.131 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.253 1.253 24 C -0.127 4.127 25 C -0.143 4.143 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.164 0.836 35 H 0.407 0.593 36 H 0.391 0.609 37 H 0.267 0.733 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -21.838 -0.799 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.233 6.233 4 C 0.040 3.960 5 C -0.210 4.210 6 C -0.132 4.132 7 C -0.154 4.154 8 C -0.121 4.121 9 C 0.059 3.941 10 N -0.331 5.331 11 C 0.396 3.604 12 O -0.461 6.461 13 N -0.364 5.364 14 C 0.152 3.848 15 H 0.070 0.930 16 C -0.570 4.570 17 H 0.096 0.904 18 C -0.123 4.123 19 N -0.526 5.526 20 Si 0.695 3.305 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.177 1.177 24 C -0.166 4.166 25 C -0.200 4.200 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.181 0.819 35 H 0.242 0.758 36 H 0.224 0.776 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.809 -21.238 -0.422 21.319 hybrid contribution 0.009 -0.095 -0.132 0.163 sum 1.817 -21.333 -0.554 21.418 Atomic orbital electron populations 1.21777 0.92826 1.02692 1.03677 1.22716 0.95719 0.82141 1.01137 1.86018 1.18771 1.29081 1.89390 1.18654 0.82521 0.92624 1.02172 1.20928 0.94197 0.97098 1.08812 1.20838 0.94112 0.97280 1.01004 1.21015 0.99833 0.91988 1.02555 1.21681 0.90593 1.01710 0.98119 1.16975 0.90140 0.83194 1.03814 1.42627 1.18589 1.09193 1.62731 1.16119 0.85584 0.80008 0.78716 1.90790 1.17977 1.82439 1.54923 1.45767 1.14080 1.12168 1.64354 1.19095 0.96868 0.79625 0.89206 0.93049 1.21013 1.01224 0.91299 1.43466 0.90388 1.24872 0.97801 0.95741 0.93839 1.69884 1.36056 1.00158 1.46502 0.86958 0.85524 0.78121 0.79854 1.20072 1.21099 1.17699 1.22129 0.98228 0.98017 0.98251 1.21880 1.00321 0.99921 0.97885 0.91471 0.90544 0.91436 0.92259 0.92244 0.85678 0.86232 0.85877 0.81931 0.75830 0.77588 0.92285 0.92175 0.93044 0.93129 0.93049 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -3.93 9.58 -19.68 -0.19 -4.12 16 4 C 0.09 1.19 6.70 -39.08 -0.26 0.93 16 5 C -0.19 -2.21 9.04 -39.47 -0.36 -2.56 16 6 C -0.11 -1.28 10.04 -39.57 -0.40 -1.68 16 7 C -0.13 -1.75 10.04 -39.58 -0.40 -2.15 16 8 C -0.10 -1.60 8.78 -39.42 -0.35 -1.94 16 9 C 0.16 2.46 6.45 -83.48 -0.54 1.92 16 10 N -0.68 -11.07 5.27 -14.10 -0.07 -11.15 16 11 C 0.69 13.55 7.05 -86.91 -0.61 12.94 16 12 O -0.58 -12.76 10.47 5.29 0.06 -12.71 16 13 N -0.71 -14.31 5.03 -59.81 -0.30 -14.61 16 14 C 0.26 5.99 1.77 -69.08 -0.12 5.87 16 15 H 0.05 1.32 5.05 -51.93 -0.26 1.06 16 16 C -0.53 -14.19 9.06 -34.44 -0.31 -14.50 16 17 H 0.08 2.19 8.03 -52.49 -0.42 1.77 16 18 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 19 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 20 Si 0.87 21.28 26.45 -169.99 -4.50 16.78 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.25 -6.07 6.12 56.52 0.35 -5.72 16 24 C -0.13 -2.79 5.23 -26.73 -0.14 -2.93 16 25 C -0.14 -2.93 8.53 37.16 0.32 -2.62 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 31 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 32 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.16 2.94 5.62 -52.49 -0.29 2.64 16 35 H 0.41 5.65 8.41 -40.82 -0.34 5.31 16 36 H 0.39 6.98 8.59 -40.82 -0.35 6.63 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.06 1.36 7.17 -51.93 -0.37 0.99 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.06 5.63 -51.93 -0.29 0.76 16 41 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -31.13 338.11 -7.84 -38.97 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.02 Total: 11.61 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.68 Total: -4.53 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.40 Total: -51.10 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.13 Total: -16.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.50 Total: 16.78 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.13 -7.84 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155521423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.720 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds