Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46979 * 2 1 4 4 C 1.35981 * 116.99999 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.08077 * 359.95750 * 4 3 2 6 6 C 1.38250 * 120.01341 * 180.02562 * 5 4 3 7 7 C 1.38267 * 120.17891 * 359.97438 * 6 5 4 8 8 C 1.38207 * 120.16007 * 0.03514 * 7 6 5 9 9 C 1.38714 * 119.98488 * 359.96994 * 8 7 6 10 10 N 1.40161 * 120.08749 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99976 * 332.81085 * 10 9 8 12 12 O 1.21588 * 120.00167 * 4.58115 * 11 10 9 13 13 N 1.34780 * 119.99938 * 184.57516 * 11 10 9 14 14 C 1.46504 * 119.99995 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.46731 * 35.00407 * 14 13 11 16 16 C 1.50700 * 109.46754 * 155.00312 * 14 13 11 17 17 H 1.07993 * 120.00093 * 26.75669 * 16 14 13 18 18 C 1.37881 * 119.99500 * 206.75357 * 16 14 13 19 19 N 1.31510 * 119.99679 * 185.30159 * 18 16 14 20 20 Si 1.86800 * 120.00201 * 5.30152 * 18 16 14 21 21 H 1.48506 * 109.46907 * 93.58809 * 20 18 16 22 22 H 1.48495 * 109.46989 * 213.58508 * 20 18 16 23 23 H 1.48496 * 109.47243 * 333.59027 * 20 18 16 24 24 C 1.53000 * 109.47094 * 275.00709 * 14 13 11 25 25 C 1.52997 * 109.47481 * 65.63719 * 24 14 13 26 26 H 1.08995 * 109.47114 * 60.00151 * 1 2 3 27 27 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47566 * 299.99770 * 1 2 3 29 29 H 1.08998 * 109.47212 * 239.99555 * 2 1 3 30 30 H 1.09002 * 109.46809 * 119.99673 * 2 1 3 31 31 H 1.08005 * 119.99741 * 0.04296 * 5 4 3 32 32 H 1.08004 * 119.90959 * 180.28123 * 6 5 4 33 33 H 1.08001 * 119.92098 * 180.02562 * 7 6 5 34 34 H 1.08001 * 120.00909 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00521 * 152.82091 * 10 9 8 36 36 H 0.97000 * 120.00125 * 0.02562 * 13 11 10 37 37 H 0.96998 * 120.00084 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.46923 * 185.63689 * 24 14 13 39 39 H 1.08994 * 109.46893 * 305.63083 * 24 14 13 40 40 H 1.09003 * 109.46530 * 299.99731 * 25 24 14 41 41 H 1.09000 * 109.47316 * 59.99405 * 25 24 14 42 42 H 1.09001 * 109.46984 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1999 0.4280 0.0020 6 6 5.5703 0.6108 0.0030 7 6 6.1012 1.8875 0.0022 8 6 5.2645 2.9875 0.0010 9 6 3.8885 2.8119 0.0000 10 7 3.0380 3.9259 -0.0018 11 6 3.4538 5.0921 0.5308 12 8 4.5944 5.2024 0.9372 13 7 2.6053 6.1360 0.6128 14 6 3.0574 7.4039 1.1912 15 1 4.1038 7.5679 0.9338 16 6 2.2224 8.5322 0.6429 17 1 1.2136 8.3435 0.3067 18 6 2.7464 9.8055 0.5706 19 7 1.9858 10.8089 0.1908 20 14 4.5365 10.1053 1.0121 21 1 5.3666 10.0441 -0.2178 22 1 4.6746 11.4457 1.6362 23 1 4.9915 9.0646 1.9686 24 6 2.9087 7.3519 2.7130 25 6 3.8622 6.3000 3.2831 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5706 0.0019 32 1 6.2279 -0.2459 -0.0005 33 1 7.1724 2.0255 0.0026 34 1 5.6818 3.9836 0.0007 35 1 2.1500 3.8576 -0.3862 36 1 1.6952 6.0480 0.2888 37 1 2.3545 11.7046 0.1396 38 1 3.1498 8.3276 3.1351 39 1 1.8824 7.0889 2.9690 40 1 3.6211 5.3243 2.8610 41 1 4.8886 6.5630 3.0271 42 1 3.7559 6.2627 4.3673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155521423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = -63.557514 kcal Electronic energy + Delta-G solvation = -23649.228094 eV Core-core repulsion = 20207.890162 eV Total energy + Delta-G solvation = -3441.337932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84802 -40.59975 -38.47003 -37.16852 -35.62098 -34.40514 -33.14594 -32.59611 -30.95301 -30.00209 -29.02217 -25.17696 -24.74109 -23.57353 -22.80767 -21.97358 -21.41785 -19.95186 -19.32811 -18.36154 -18.18526 -17.14350 -16.98342 -16.67076 -16.36509 -15.98803 -15.67016 -15.10196 -14.95969 -14.78727 -14.56674 -14.21748 -14.05449 -13.73368 -13.67148 -13.35625 -13.00220 -12.92608 -12.86124 -12.60843 -12.52992 -12.37440 -11.99563 -11.79906 -11.73602 -11.59844 -11.36753 -11.20843 -10.82314 -10.77187 -9.79952 -9.48172 -8.67488 -8.37648 -6.43070 0.39401 0.48801 1.30448 1.36075 1.48403 1.74885 2.19767 2.25451 2.29373 2.91332 2.99074 3.40508 3.91255 4.04783 4.11117 4.26442 4.29269 4.33503 4.42187 4.42498 4.52873 4.54194 4.61232 4.77330 4.84966 4.98088 5.00059 5.09400 5.16326 5.23437 5.27242 5.30502 5.38219 5.43204 5.54490 5.61004 5.65841 5.78204 5.93252 5.99839 6.31509 6.50302 6.61344 7.15831 7.24241 7.64811 8.77468 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.004106 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.581531 B = 6818.197851 C = 7554.894315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.334 6.334 4 C 0.089 3.911 5 C -0.187 4.187 6 C -0.100 4.100 7 C -0.142 4.142 8 C -0.123 4.123 9 C 0.120 3.880 10 N -0.673 5.673 11 C 0.696 3.304 12 O -0.607 6.607 13 N -0.714 5.714 14 C 0.263 3.737 15 H 0.032 0.968 16 C -0.529 4.529 17 H 0.055 0.945 18 C 0.034 3.966 19 N -0.931 5.931 20 Si 0.923 3.077 21 H -0.276 1.276 22 H -0.277 1.277 23 H -0.247 1.247 24 C -0.124 4.124 25 C -0.130 4.130 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.416 0.584 36 H 0.401 0.599 37 H 0.270 0.730 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.036 0.964 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -25.100 -0.309 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.249 6.249 4 C 0.041 3.959 5 C -0.206 4.206 6 C -0.119 4.119 7 C -0.161 4.161 8 C -0.143 4.143 9 C 0.024 3.976 10 N -0.320 5.320 11 C 0.397 3.603 12 O -0.488 6.488 13 N -0.367 5.367 14 C 0.159 3.841 15 H 0.050 0.950 16 C -0.567 4.567 17 H 0.073 0.927 18 C -0.166 4.166 19 N -0.570 5.570 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.202 1.202 23 H -0.171 1.171 24 C -0.164 4.164 25 C -0.187 4.187 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.252 0.748 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.423 -24.560 0.053 24.679 hybrid contribution -0.251 0.723 -0.336 0.836 sum 2.172 -23.837 -0.283 23.937 Atomic orbital electron populations 1.21810 0.91875 1.04119 1.02951 1.23054 0.96535 0.80595 1.02452 1.86015 1.18103 1.31614 1.89171 1.18731 0.83506 0.92193 1.01465 1.21352 0.94150 0.97920 1.07165 1.21270 0.94651 0.97556 0.98416 1.21243 1.00473 0.92022 1.02323 1.21532 0.91325 1.01404 1.00084 1.17210 0.90170 0.83791 1.06406 1.42363 1.19105 1.08464 1.62082 1.16117 0.84986 0.80564 0.78665 1.90785 1.18956 1.83069 1.55998 1.45439 1.14730 1.11593 1.64894 1.18791 0.95007 0.80042 0.90297 0.95001 1.21211 1.00554 0.92359 1.42575 0.92723 1.25542 1.01247 0.95697 0.94120 1.69982 1.37789 1.00714 1.48501 0.86107 0.81192 0.78368 0.79643 1.20197 1.20213 1.17060 1.22041 0.99167 0.98236 0.96918 1.21724 0.98794 0.98803 0.99376 0.91968 0.88020 0.92406 0.90596 0.91076 0.82376 0.82546 0.84215 0.84967 0.74767 0.76466 0.92061 0.92898 0.92229 0.93719 0.94518 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.05 0.68 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.64 9.58 -93.34 -0.89 -8.54 16 4 C 0.09 2.25 6.70 22.59 0.15 2.40 16 5 C -0.19 -3.65 9.04 22.34 0.20 -3.45 16 6 C -0.10 -1.91 10.04 22.28 0.22 -1.68 16 7 C -0.14 -3.45 10.04 22.27 0.22 -3.22 16 8 C -0.12 -3.92 8.78 22.38 0.20 -3.73 16 9 C 0.12 3.75 6.45 38.17 0.25 4.00 16 10 N -0.67 -21.98 5.27 -316.80 -1.67 -23.65 16 11 C 0.70 27.60 7.05 179.05 1.26 28.86 16 12 O -0.61 -27.26 10.47 -3.99 -0.04 -27.30 16 13 N -0.71 -29.12 5.03 -461.40 -2.32 -31.45 16 14 C 0.26 12.50 1.77 44.24 0.08 12.58 16 15 H 0.03 1.66 5.05 -2.39 -0.01 1.65 16 16 C -0.53 -28.80 9.06 25.60 0.23 -28.57 16 17 H 0.05 3.17 8.03 -2.91 -0.02 3.15 16 18 C 0.03 1.93 5.47 84.66 0.46 2.39 16 19 N -0.93 -55.83 13.96 21.45 0.30 -55.53 16 20 Si 0.92 44.47 26.45 68.60 1.81 46.28 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.25 -11.57 6.12 99.48 0.61 -10.96 16 24 C -0.12 -5.42 5.23 30.59 0.16 -5.26 16 25 C -0.13 -5.21 8.53 71.98 0.61 -4.60 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.83 7.67 -2.39 -0.02 0.82 16 30 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 31 H 0.16 2.00 6.30 -2.91 -0.02 1.98 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.13 5.02 5.62 -2.91 -0.02 5.00 16 35 H 0.42 11.62 8.41 -92.71 -0.78 10.84 16 36 H 0.40 14.56 8.59 -92.71 -0.80 13.77 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.05 2.36 7.17 -2.38 -0.02 2.34 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.04 1.84 5.63 -2.39 -0.01 1.82 16 41 H 0.04 1.56 7.88 -2.39 -0.02 1.54 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -68.55 338.11 1.74 -66.80 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.62 Total: 33.58 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.18 Total: -0.21 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.69 Total: -110.62 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.94 Total: -35.83 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.81 Total: 46.28 kcal Total: -68.55 1.74 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155521423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.247 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds