Wall clock time and date at job start Tue Mar 31 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09003 * 109.46868 * 303.74566 * 3 2 1 5 5 C 1.50702 * 109.47112 * 183.74670 * 3 2 1 6 6 H 1.07995 * 119.99802 * 245.90527 * 5 3 2 7 7 C 1.37872 * 119.99997 * 65.91057 * 5 3 2 8 8 N 1.31518 * 119.99916 * 199.45863 * 7 5 3 9 9 Si 1.86799 * 120.00401 * 19.45010 * 7 5 3 10 10 H 1.48499 * 109.47594 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47157 * 300.00783 * 9 7 5 12 12 H 1.48502 * 109.47005 * 60.00332 * 9 7 5 13 13 N 1.46501 * 109.47406 * 63.74491 * 3 2 1 14 14 C 1.34776 * 119.99882 * 275.00335 * 13 3 2 15 15 O 1.21589 * 120.00390 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99789 * 179.97438 * 14 13 3 17 17 C 1.39952 * 119.99903 * 184.74470 * 16 14 13 18 18 C 1.38884 * 120.07139 * 321.69456 * 17 16 14 19 19 C 1.38091 * 119.92999 * 179.79096 * 18 17 16 20 20 C 1.38305 * 120.06857 * 0.48196 * 19 18 17 21 21 C 1.38264 * 120.14183 * 359.74332 * 20 19 18 22 22 C 1.50698 * 119.96607 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.47062 * 270.02398 * 22 21 20 24 24 C 1.42904 * 113.99717 * 180.02562 * 23 22 21 25 25 C 1.38138 * 120.06596 * 0.02952 * 21 20 19 26 26 H 1.08999 * 109.47098 * 300.00017 * 1 2 3 27 27 H 1.08999 * 109.47253 * 60.00394 * 1 2 3 28 28 H 1.09008 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47098 * 239.99983 * 2 1 3 30 30 H 1.09004 * 109.47025 * 120.00015 * 2 1 3 31 31 H 0.96995 * 119.99630 * 354.94247 * 8 7 5 32 32 H 0.96995 * 119.99946 * 94.99937 * 13 3 2 33 33 H 0.96993 * 120.00109 * 4.74948 * 16 14 13 34 34 H 1.08006 * 120.03547 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.96808 * 180.22751 * 19 18 17 36 36 H 1.07999 * 119.93329 * 179.76797 * 20 19 18 37 37 H 1.08998 * 109.46939 * 30.02818 * 22 21 20 38 38 H 1.08997 * 109.46689 * 150.02424 * 22 21 20 39 39 H 1.09000 * 109.47381 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.47158 * 299.99867 * 24 23 22 41 41 H 1.09004 * 109.47177 * 59.99894 * 24 23 22 42 42 H 1.08001 * 120.03037 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9753 -0.8545 5 6 3.5441 1.4435 -0.0928 6 1 4.1359 1.8070 0.7342 7 6 4.1647 0.9805 -1.2336 8 7 5.4286 0.6190 -1.1941 9 14 3.2104 0.8662 -2.8354 10 1 4.0983 0.3430 -3.9045 11 1 2.0547 -0.0494 -2.6587 12 1 2.7195 2.2150 -3.2164 13 7 1.6267 2.1066 1.2387 14 6 0.4073 2.6742 1.3245 15 8 -0.3496 2.6355 0.3738 16 7 0.0270 3.2847 2.4643 17 6 -1.2735 3.7867 2.5889 18 6 -1.8925 4.3926 1.5033 19 6 -3.1773 4.8831 1.6282 20 6 -3.8440 4.7802 2.8356 21 6 -3.2288 4.1817 3.9196 22 6 -3.9586 4.0723 5.2335 23 8 -3.6913 5.2317 6.0248 24 6 -4.3391 5.2280 7.2986 25 6 -1.9454 3.6850 3.7997 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9443 0.7466 -0.3826 32 1 2.2307 2.1378 1.9970 33 1 0.6545 3.3763 3.1982 34 1 -1.3706 4.4776 0.5615 35 1 -3.6607 5.3511 0.7833 36 1 -4.8474 5.1679 2.9319 37 1 -5.0302 3.9976 5.0487 38 1 -3.6187 3.1834 5.7649 39 1 -4.0864 6.1412 7.8374 40 1 -5.4187 5.1771 7.1570 41 1 -4.0067 4.3631 7.8727 42 1 -1.4655 3.2172 4.6466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155681109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:47 Heat of formation + Delta-G solvation = -51.198989 kcal Electronic energy + Delta-G solvation = -23104.470360 eV Core-core repulsion = 19663.668334 eV Total energy + Delta-G solvation = -3440.802026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37326 -38.99002 -37.70788 -35.63870 -34.28573 -32.51696 -31.87621 -31.38760 -29.35937 -27.47596 -27.03063 -25.50279 -22.84776 -22.26843 -22.06901 -20.37198 -19.69161 -18.48692 -17.53581 -16.89824 -16.63977 -16.19303 -16.08600 -15.30377 -15.25415 -14.75460 -14.55082 -13.88413 -13.66711 -13.38878 -12.95117 -12.74550 -12.62237 -12.49981 -12.43815 -12.28361 -11.77690 -11.68629 -11.57209 -11.17727 -10.88001 -10.70529 -10.43877 -10.10220 -9.99309 -9.86767 -9.64486 -9.48333 -9.10891 -8.81287 -8.30461 -8.23662 -7.88036 -6.61239 -4.23272 1.31806 1.40146 3.08498 3.38876 3.40703 3.44717 3.60245 3.73290 4.06047 4.40686 4.68422 4.74300 4.77796 5.00131 5.01548 5.06715 5.13668 5.15276 5.22731 5.34277 5.44042 5.60209 5.75924 5.96836 6.09572 6.11561 6.28273 6.39960 6.42993 6.59018 6.64272 6.69189 6.80854 6.84301 6.94619 7.03797 7.16900 7.19698 7.40679 7.49087 7.77396 8.22407 8.60498 8.72556 9.11239 9.45318 10.79715 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.003163 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.274730 B = 8849.589969 C = 9142.297416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.265 3.735 4 H 0.042 0.958 5 C -0.620 4.620 6 H 0.061 0.939 7 C 0.041 3.959 8 N -0.895 5.895 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.280 1.280 13 N -0.712 5.712 14 C 0.694 3.306 15 O -0.579 6.579 16 N -0.698 5.698 17 C 0.176 3.824 18 C -0.108 4.108 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.080 4.080 22 C 0.106 3.894 23 O -0.385 6.385 24 C 0.030 3.970 25 C -0.131 4.131 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.390 0.610 33 H 0.403 0.597 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 6.859 13.592 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C 0.161 3.839 4 H 0.060 0.940 5 C -0.658 4.658 6 H 0.079 0.921 7 C -0.166 4.166 8 N -0.528 5.528 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.206 1.206 13 N -0.363 5.363 14 C 0.395 3.605 15 O -0.457 6.457 16 N -0.346 5.346 17 C 0.080 3.920 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.141 4.141 21 C -0.081 4.081 22 C 0.030 3.970 23 O -0.304 6.304 24 C -0.067 4.067 25 C -0.152 4.152 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.223 0.777 33 H 0.238 0.762 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.178 6.384 11.007 22.189 hybrid contribution 0.409 0.304 2.618 2.667 sum -17.770 6.687 13.625 23.369 Atomic orbital electron populations 1.21857 0.97305 0.98697 1.01969 1.22323 0.93824 0.99810 1.01635 1.18958 0.95146 0.88063 0.81688 0.94047 1.22056 0.89559 1.49664 1.04518 0.92079 1.25671 0.97089 0.91996 1.01859 1.70889 1.09726 1.39585 1.32583 0.84090 0.75646 0.77712 0.75814 1.20908 1.19627 1.20590 1.45555 1.13692 1.58188 1.18893 1.16104 0.83363 0.78606 0.82464 1.90887 1.53251 1.65034 1.36516 1.42800 1.12187 1.61305 1.18348 1.17459 0.84913 0.95205 0.94420 1.21408 0.95766 0.96182 0.99505 1.21024 0.94519 0.99562 0.97310 1.20924 1.00137 1.00207 0.92803 1.19212 0.94309 1.00480 0.94085 1.21322 0.98191 0.88292 0.89240 1.87991 1.72013 1.41795 1.28599 1.22756 0.96562 1.02221 0.85117 1.20738 0.94130 1.03087 0.97248 0.93462 0.92904 0.95258 0.91494 0.93160 0.92078 0.77745 0.76230 0.84134 0.85732 0.86276 0.92402 0.92501 0.89598 0.94094 0.94058 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.49 37.16 0.32 -2.58 16 2 C -0.14 -3.06 5.32 -26.73 -0.14 -3.20 16 3 C 0.27 6.26 1.84 -69.08 -0.13 6.13 16 4 H 0.04 1.07 6.18 -51.93 -0.32 0.75 16 5 C -0.62 -16.54 8.98 -34.44 -0.31 -16.85 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.04 1.14 5.29 -17.82 -0.09 1.04 16 8 N -0.90 -26.41 13.70 55.43 0.76 -25.65 16 9 Si 1.04 24.95 26.37 -169.99 -4.48 20.47 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.10 5.84 56.52 0.33 -5.77 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.71 -14.14 5.01 -59.81 -0.30 -14.44 16 14 C 0.69 13.20 6.90 -86.92 -0.60 12.60 16 15 O -0.58 -12.64 11.12 5.29 0.06 -12.58 16 16 N -0.70 -10.47 5.34 -14.22 -0.08 -10.54 16 17 C 0.18 2.60 6.24 -83.69 -0.52 2.08 16 18 C -0.11 -1.66 8.68 -39.40 -0.34 -2.00 16 19 C -0.11 -1.34 10.04 -39.61 -0.40 -1.74 16 20 C -0.12 -1.41 9.70 -39.55 -0.38 -1.80 16 21 C -0.08 -0.95 5.51 -104.65 -0.58 -1.53 16 22 C 0.11 1.01 6.06 36.00 0.22 1.23 16 23 O -0.38 -4.07 10.69 -35.23 -0.38 -4.45 16 24 C 0.03 0.21 11.01 101.05 1.11 1.32 16 25 C -0.13 -1.66 9.62 -39.39 -0.38 -2.04 16 26 H 0.05 0.97 5.68 -51.93 -0.29 0.68 16 27 H 0.05 1.13 7.77 -51.93 -0.40 0.73 16 28 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 1.56 5.08 -51.93 -0.26 1.30 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 32 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 33 H 0.40 4.78 8.84 -40.82 -0.36 4.42 16 34 H 0.14 2.43 6.47 -52.48 -0.34 2.09 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -31.72 342.24 -7.68 -39.40 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.20 Total: 9.97 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.23 Total: -7.33 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.38 Total: -50.63 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.32 Total: -17.03 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.48 Total: 20.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.72 -7.68 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155681109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.802 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds