Wall clock time and date at job start Tue Mar 31 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09003 * 109.46868 * 303.74566 * 3 2 1 5 5 C 1.50702 * 109.47112 * 183.74670 * 3 2 1 6 6 H 1.07995 * 119.99802 * 245.90527 * 5 3 2 7 7 C 1.37872 * 119.99997 * 65.91057 * 5 3 2 8 8 N 1.31518 * 119.99916 * 199.45863 * 7 5 3 9 9 Si 1.86799 * 120.00401 * 19.45010 * 7 5 3 10 10 H 1.48499 * 109.47594 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47157 * 300.00783 * 9 7 5 12 12 H 1.48502 * 109.47005 * 60.00332 * 9 7 5 13 13 N 1.46501 * 109.47406 * 63.74491 * 3 2 1 14 14 C 1.34776 * 119.99882 * 275.00335 * 13 3 2 15 15 O 1.21589 * 120.00390 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99789 * 179.97438 * 14 13 3 17 17 C 1.39952 * 119.99903 * 184.74470 * 16 14 13 18 18 C 1.38884 * 120.07139 * 321.69456 * 17 16 14 19 19 C 1.38091 * 119.92999 * 179.79096 * 18 17 16 20 20 C 1.38305 * 120.06857 * 0.48196 * 19 18 17 21 21 C 1.38264 * 120.14183 * 359.74332 * 20 19 18 22 22 C 1.50698 * 119.96607 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.47062 * 270.02398 * 22 21 20 24 24 C 1.42904 * 113.99717 * 180.02562 * 23 22 21 25 25 C 1.38138 * 120.06596 * 0.02952 * 21 20 19 26 26 H 1.08999 * 109.47098 * 300.00017 * 1 2 3 27 27 H 1.08999 * 109.47253 * 60.00394 * 1 2 3 28 28 H 1.09008 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47098 * 239.99983 * 2 1 3 30 30 H 1.09004 * 109.47025 * 120.00015 * 2 1 3 31 31 H 0.96995 * 119.99630 * 354.94247 * 8 7 5 32 32 H 0.96995 * 119.99946 * 94.99937 * 13 3 2 33 33 H 0.96993 * 120.00109 * 4.74948 * 16 14 13 34 34 H 1.08006 * 120.03547 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.96808 * 180.22751 * 19 18 17 36 36 H 1.07999 * 119.93329 * 179.76797 * 20 19 18 37 37 H 1.08998 * 109.46939 * 30.02818 * 22 21 20 38 38 H 1.08997 * 109.46689 * 150.02424 * 22 21 20 39 39 H 1.09000 * 109.47381 * 180.02562 * 24 23 22 40 40 H 1.09007 * 109.47158 * 299.99867 * 24 23 22 41 41 H 1.09004 * 109.47177 * 59.99894 * 24 23 22 42 42 H 1.08001 * 120.03037 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9753 -0.8545 5 6 3.5441 1.4435 -0.0928 6 1 4.1359 1.8070 0.7342 7 6 4.1647 0.9805 -1.2336 8 7 5.4286 0.6190 -1.1941 9 14 3.2104 0.8662 -2.8354 10 1 4.0983 0.3430 -3.9045 11 1 2.0547 -0.0494 -2.6587 12 1 2.7195 2.2150 -3.2164 13 7 1.6267 2.1066 1.2387 14 6 0.4073 2.6742 1.3245 15 8 -0.3496 2.6355 0.3738 16 7 0.0270 3.2847 2.4643 17 6 -1.2735 3.7867 2.5889 18 6 -1.8925 4.3926 1.5033 19 6 -3.1773 4.8831 1.6282 20 6 -3.8440 4.7802 2.8356 21 6 -3.2288 4.1817 3.9196 22 6 -3.9586 4.0723 5.2335 23 8 -3.6913 5.2317 6.0248 24 6 -4.3391 5.2280 7.2986 25 6 -1.9454 3.6850 3.7997 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9443 0.7466 -0.3826 32 1 2.2307 2.1378 1.9970 33 1 0.6545 3.3763 3.1982 34 1 -1.3706 4.4776 0.5615 35 1 -3.6607 5.3511 0.7833 36 1 -4.8474 5.1679 2.9319 37 1 -5.0302 3.9976 5.0487 38 1 -3.6187 3.1834 5.7649 39 1 -4.0864 6.1412 7.8374 40 1 -5.4187 5.1771 7.1570 41 1 -4.0067 4.3631 7.8727 42 1 -1.4655 3.2172 4.6466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155681109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:46 Heat of formation + Delta-G solvation = -73.234622 kcal Electronic energy + Delta-G solvation = -23105.425897 eV Core-core repulsion = 19663.668334 eV Total energy + Delta-G solvation = -3441.757563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69180 -40.10841 -38.54272 -37.25869 -35.67536 -34.49356 -33.18312 -32.68923 -30.55407 -28.93908 -28.08721 -26.21507 -24.50886 -23.68772 -23.21387 -21.77991 -21.35544 -20.18056 -19.08589 -18.25077 -17.36721 -17.26623 -16.98374 -16.67487 -16.51810 -15.83581 -15.74844 -15.38267 -15.06996 -14.71154 -14.54543 -14.38886 -14.24718 -13.70008 -13.64951 -13.43786 -13.11666 -12.69695 -12.63148 -12.46430 -12.30951 -12.27838 -12.11138 -11.78319 -11.52703 -11.27747 -11.12807 -10.93054 -10.61614 -10.43724 -9.88723 -9.80920 -9.07427 -8.80258 -6.43704 0.31390 0.39319 1.46432 1.51000 1.67983 1.76386 2.14378 2.41411 2.69081 2.99752 3.21460 3.35751 3.89406 3.94733 4.17633 4.32234 4.32967 4.40719 4.41885 4.44238 4.51718 4.57475 4.59654 4.63358 4.77090 4.84215 4.90640 5.01826 5.09405 5.20520 5.28618 5.37129 5.41537 5.54391 5.58578 5.62677 5.63442 5.69041 6.00522 6.09878 6.15213 6.24048 6.53751 7.13503 7.29300 7.61861 8.58800 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.003163 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.274730 B = 8849.589969 C = 9142.297416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 C 0.272 3.728 4 H 0.023 0.977 5 C -0.616 4.616 6 H 0.040 0.960 7 C -0.002 4.002 8 N -0.925 5.925 9 Si 1.071 2.929 10 H -0.282 1.282 11 H -0.247 1.247 12 H -0.274 1.274 13 N -0.714 5.714 14 C 0.696 3.304 15 O -0.607 6.607 16 N -0.682 5.682 17 C 0.151 3.849 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.083 4.083 22 C 0.106 3.894 23 O -0.411 6.411 24 C 0.024 3.976 25 C -0.129 4.129 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.258 0.742 32 H 0.400 0.600 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.611 6.932 15.075 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 C 0.166 3.834 4 H 0.041 0.959 5 C -0.654 4.654 6 H 0.059 0.941 7 C -0.204 4.204 8 N -0.560 5.560 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.172 1.172 12 H -0.200 1.200 13 N -0.366 5.366 14 C 0.397 3.603 15 O -0.487 6.487 16 N -0.332 5.332 17 C 0.056 3.944 18 C -0.154 4.154 19 C -0.126 4.126 20 C -0.136 4.136 21 C -0.084 4.084 22 C 0.030 3.970 23 O -0.331 6.331 24 C -0.072 4.072 25 C -0.149 4.149 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.235 0.765 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.952 6.481 12.563 25.275 hybrid contribution 1.188 0.391 2.303 2.621 sum -19.764 6.872 14.866 25.668 Atomic orbital electron populations 1.21710 0.95597 1.00037 1.01220 1.22209 0.95215 0.98444 1.01321 1.18630 0.92907 0.89139 0.82682 0.95929 1.22236 0.91336 1.48223 1.03555 0.94141 1.26767 0.97168 0.91718 1.04703 1.70989 1.10751 1.42010 1.32217 0.83694 0.75502 0.78539 0.72951 1.20781 1.17178 1.19982 1.45256 1.14560 1.58604 1.18190 1.16109 0.82620 0.78487 0.83133 1.90870 1.53922 1.66010 1.37900 1.42509 1.12905 1.60301 1.17460 1.17657 0.84846 0.96486 0.95368 1.21339 0.97101 0.98199 0.98757 1.21247 0.93602 0.99127 0.98654 1.21279 1.01156 0.99091 0.92028 1.19611 0.94005 0.99317 0.95457 1.21376 0.98967 0.88553 0.88088 1.87940 1.72915 1.42226 1.30064 1.22943 0.97248 1.03139 0.83822 1.20938 0.94513 1.02741 0.96736 0.93771 0.94094 0.92770 0.92426 0.92833 0.93212 0.76540 0.74497 0.86952 0.83953 0.83492 0.90465 0.91291 0.88853 0.92726 0.93077 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.49 71.98 0.61 -4.46 16 2 C -0.13 -5.82 5.32 30.59 0.16 -5.65 16 3 C 0.27 12.81 1.84 44.24 0.08 12.89 16 4 H 0.02 1.18 6.18 -2.39 -0.01 1.16 16 5 C -0.62 -33.29 8.98 25.60 0.23 -33.06 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.28 16 7 C 0.00 -0.13 5.29 84.65 0.45 0.32 16 8 N -0.92 -55.63 13.70 21.45 0.29 -55.34 16 9 Si 1.07 50.32 26.37 68.60 1.81 52.13 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.25 -10.64 5.84 99.48 0.58 -10.06 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 N -0.71 -28.27 5.01 -461.41 -2.31 -30.58 16 14 C 0.70 26.38 6.90 179.05 1.24 27.62 16 15 O -0.61 -26.68 11.12 -4.00 -0.04 -26.73 16 16 N -0.68 -20.07 5.34 -317.17 -1.69 -21.76 16 17 C 0.15 4.36 6.24 38.14 0.24 4.60 16 18 C -0.13 -4.08 8.68 22.39 0.19 -3.89 16 19 C -0.11 -2.60 10.04 22.25 0.22 -2.38 16 20 C -0.12 -2.40 9.70 22.29 0.22 -2.19 16 21 C -0.08 -1.75 5.51 -19.88 -0.11 -1.85 16 22 C 0.11 1.67 6.06 71.24 0.43 2.10 16 23 O -0.41 -7.53 10.69 -148.98 -1.59 -9.12 16 24 C 0.02 0.26 11.01 113.37 1.25 1.51 16 25 C -0.13 -3.01 9.62 22.39 0.22 -2.80 16 26 H 0.04 1.76 5.68 -2.39 -0.01 1.75 16 27 H 0.04 1.70 7.77 -2.39 -0.02 1.68 16 28 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 2.62 5.08 -2.39 -0.01 2.60 16 30 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.26 15.56 8.73 -92.71 -0.81 14.75 16 32 H 0.40 13.99 8.54 -92.71 -0.79 13.20 16 33 H 0.42 9.50 8.84 -92.71 -0.82 8.68 16 34 H 0.11 4.04 6.47 -2.91 -0.02 4.02 16 35 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 38 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -68.88 342.24 1.15 -67.73 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.73 Total: 30.90 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.43 Total: -7.24 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -3.71 Total: -107.68 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.64 Total: -35.84 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 1.81 Total: 52.13 kcal Total: -68.88 1.15 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155681109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.506 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds