Wall clock time and date at job start Tue Mar 31 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47346 * 2 1 4 4 C 1.35901 * 116.99928 * 180.02562 * 3 2 1 5 5 C 1.38806 * 120.02408 * 359.97438 * 4 3 2 6 6 C 1.38164 * 120.08915 * 180.02562 * 5 4 3 7 7 C 1.38168 * 120.11894 * 359.97438 * 6 5 4 8 8 C 1.38883 * 120.04163 * 0.02562 * 7 6 5 9 9 N 1.39947 * 120.04150 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99839 * 144.93205 * 9 8 7 11 11 O 1.21585 * 120.00510 * 4.62190 * 10 9 8 12 12 N 1.34781 * 119.99622 * 184.62232 * 10 9 8 13 13 C 1.46501 * 119.99627 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47266 * 35.00212 * 13 12 10 15 15 C 1.50699 * 109.46688 * 155.00040 * 13 12 10 16 16 H 1.08001 * 120.00549 * 359.97438 * 15 13 12 17 17 C 1.37882 * 120.00084 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99652 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00359 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47407 * 89.99995 * 19 17 15 21 21 H 1.48502 * 109.47176 * 210.00416 * 19 17 15 22 22 H 1.48500 * 109.47191 * 329.99857 * 19 17 15 23 23 C 1.52998 * 109.47201 * 274.99596 * 13 12 10 24 24 C 1.53000 * 109.46823 * 65.00430 * 23 13 12 25 25 C 1.38585 * 120.01669 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.47349 * 59.99939 * 1 2 3 27 27 H 1.08996 * 109.47514 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47163 * 300.00086 * 1 2 3 29 29 H 1.09000 * 109.47163 * 239.99914 * 2 1 3 30 30 H 1.09006 * 109.47461 * 120.00309 * 2 1 3 31 31 H 1.08005 * 119.95878 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.94238 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.98022 * 179.97438 * 7 6 5 34 34 H 0.96998 * 119.99888 * 324.92975 * 9 8 7 35 35 H 0.97002 * 120.00128 * 0.02562 * 12 10 9 36 36 H 0.97007 * 119.99977 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.47394 * 185.00187 * 23 13 12 38 38 H 1.09001 * 109.47585 * 305.00196 * 23 13 12 39 39 H 1.09005 * 109.47603 * 299.99662 * 24 23 13 40 40 H 1.08996 * 109.47510 * 59.99908 * 24 23 13 41 41 H 1.09006 * 109.47320 * 180.02562 * 24 23 13 42 42 H 1.07990 * 120.06638 * 0.24664 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1996 0.4248 -0.0005 6 6 5.5695 0.6042 -0.0005 7 6 6.1018 1.8792 -0.0011 8 6 5.2602 2.9840 -0.0011 9 7 5.7993 4.2755 -0.0012 10 6 5.1773 5.2653 -0.6718 11 8 4.1053 5.0573 -1.2063 12 7 5.7438 6.4858 -0.7499 13 6 5.0679 7.5616 -1.4793 14 1 3.9898 7.4657 -1.3515 15 6 5.5209 8.8946 -0.9418 16 1 6.2399 8.9363 -0.1370 17 6 5.0174 10.0611 -1.4774 18 7 4.1414 10.0104 -2.4570 19 14 5.5794 11.7134 -0.8116 20 1 6.7713 12.1728 -1.5689 21 1 4.4849 12.7058 -0.9616 22 1 5.9287 11.5754 0.6251 23 6 5.4157 7.4665 -2.9662 24 6 4.8464 6.1679 -3.5410 25 6 3.8838 2.8057 0.0000 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7864 -0.5731 -0.0005 32 1 6.2256 -0.2538 -0.0001 33 1 7.1730 2.0169 -0.0007 34 1 6.6206 4.4581 0.4815 35 1 6.5992 6.6516 -0.3237 36 1 3.7869 10.8311 -2.8336 37 1 4.9859 8.3171 -3.4951 38 1 6.4990 7.4732 -3.0871 39 1 5.2762 5.3171 -3.0122 40 1 3.7632 6.1612 -3.4201 41 1 5.0945 6.0998 -4.6003 42 1 3.2272 3.6631 0.0048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155820308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:32 Heat of formation + Delta-G solvation = -45.765198 kcal Electronic energy + Delta-G solvation = -23263.808418 eV Core-core repulsion = 19823.242019 eV Total energy + Delta-G solvation = -3440.566399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42004 -39.40294 -37.47760 -35.29195 -34.00015 -32.39784 -32.04907 -30.93128 -29.65082 -28.87769 -26.81167 -24.02851 -23.11485 -22.67067 -21.66438 -20.42223 -19.50405 -18.46508 -18.09788 -16.34399 -16.13714 -16.04024 -15.72594 -15.58876 -14.89218 -14.78268 -14.10332 -13.71962 -13.45230 -13.29655 -13.17045 -12.73647 -12.64985 -12.43552 -12.10988 -11.89887 -11.63146 -11.53016 -11.24338 -11.01166 -10.95256 -10.88897 -10.79171 -10.29759 -10.16913 -9.94866 -9.57580 -9.30006 -9.02137 -8.50373 -8.20280 -7.99745 -7.69809 -6.11993 -4.21368 1.45496 1.57512 3.02933 3.24537 3.31244 3.32970 3.40212 3.70764 4.07875 4.32751 4.77069 4.77409 4.96614 4.99718 5.03193 5.16167 5.19799 5.24928 5.36111 5.52078 5.63091 5.68634 5.87875 6.04170 6.38158 6.39740 6.43598 6.50904 6.53829 6.60632 6.69998 7.04365 7.10758 7.17660 7.37170 7.40209 7.47998 7.55569 7.65197 7.87967 7.99674 8.19685 8.74172 8.85525 9.26631 9.47128 10.93323 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.003378 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.213972 B = 8287.468294 C = 8787.826601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.313 6.313 4 C 0.146 3.854 5 C -0.236 4.236 6 C -0.064 4.064 7 C -0.193 4.193 8 C 0.219 3.781 9 N -0.696 5.696 10 C 0.691 3.309 11 O -0.571 6.571 12 N -0.718 5.718 13 C 0.286 3.714 14 H 0.051 0.949 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.881 5.881 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.155 4.155 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.404 0.596 35 H 0.386 0.614 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.021 0.979 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -18.847 5.610 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.227 6.227 4 C 0.100 3.900 5 C -0.256 4.256 6 C -0.083 4.083 7 C -0.214 4.214 8 C 0.122 3.878 9 N -0.344 5.344 10 C 0.391 3.609 11 O -0.448 6.448 12 N -0.369 5.369 13 C 0.184 3.816 14 H 0.068 0.932 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.518 5.518 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.167 4.167 24 C -0.193 4.193 25 C -0.176 4.176 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.238 0.762 35 H 0.218 0.782 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.144 -18.605 4.938 19.249 hybrid contribution 1.287 0.811 0.660 1.658 sum 1.431 -17.794 5.598 18.708 Atomic orbital electron populations 1.21775 0.92922 1.02563 1.03740 1.22736 0.95775 0.82326 1.01132 1.86111 1.19211 1.28795 1.88561 1.18768 0.82132 0.93613 0.95484 1.21094 0.94365 0.97659 1.12496 1.20583 0.94158 0.96328 0.97243 1.20766 0.99282 0.91557 1.09784 1.17166 0.91312 0.83616 0.95739 1.42876 1.29325 1.07281 1.54929 1.16137 0.84350 0.80881 0.79487 1.90911 1.21272 1.81388 1.51252 1.45839 1.24517 1.09412 1.57147 1.18726 0.93760 0.81825 0.87244 0.93165 1.21220 1.26642 0.90131 1.19299 0.92104 1.24879 0.94727 0.99247 0.94817 1.69899 1.29036 1.28183 1.24718 0.86445 0.78283 0.83098 0.79244 1.20576 1.21070 1.19891 1.21956 0.98138 0.97594 0.99024 1.21818 1.01306 0.98794 0.97377 1.20583 0.94424 0.96017 1.06559 0.91381 0.90589 0.91512 0.92184 0.92249 0.85971 0.85839 0.85875 0.76151 0.78242 0.92536 0.88263 0.95115 0.94301 0.93109 0.96016 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.87 16 2 C 0.06 0.55 5.46 37.15 0.20 0.76 16 3 O -0.31 -4.60 10.13 -19.43 -0.20 -4.79 16 4 C 0.15 2.22 6.68 -39.24 -0.26 1.96 16 5 C -0.24 -2.91 9.03 -39.40 -0.36 -3.26 16 6 C -0.06 -0.73 10.03 -39.63 -0.40 -1.13 16 7 C -0.19 -2.43 9.96 -39.37 -0.39 -2.82 16 8 C 0.22 3.42 6.30 -83.71 -0.53 2.89 16 9 N -0.70 -10.84 5.34 -14.24 -0.08 -10.92 16 10 C 0.69 13.89 6.97 -86.92 -0.61 13.29 16 11 O -0.57 -13.53 10.92 5.29 0.06 -13.47 16 12 N -0.72 -14.71 5.03 -59.82 -0.30 -15.01 16 13 C 0.29 7.16 2.24 -69.08 -0.15 7.01 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 18 N -0.88 -24.60 11.29 55.43 0.63 -23.98 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 24 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 25 C -0.15 -2.69 8.63 -39.25 -0.34 -3.03 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.12 1.18 6.29 -52.48 -0.33 0.85 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.40 4.80 8.84 -40.82 -0.36 4.43 16 35 H 0.39 6.74 8.56 -40.82 -0.35 6.39 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 40 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.15 3.08 6.23 -52.49 -0.33 2.75 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -31.24 342.27 -8.49 -39.73 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.07 Total: 11.69 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.67 Total: -3.89 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.25 Total: -49.91 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.14 Total: -18.26 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.24 -8.49 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155820308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.037 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds