Wall clock time and date at job start Tue Mar 31 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47346 * 2 1 4 4 C 1.35901 * 116.99928 * 180.02562 * 3 2 1 5 5 C 1.38806 * 120.02408 * 359.97438 * 4 3 2 6 6 C 1.38164 * 120.08915 * 180.02562 * 5 4 3 7 7 C 1.38168 * 120.11894 * 359.97438 * 6 5 4 8 8 C 1.38883 * 120.04163 * 0.02562 * 7 6 5 9 9 N 1.39947 * 120.04150 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99839 * 144.93205 * 9 8 7 11 11 O 1.21585 * 120.00510 * 4.62190 * 10 9 8 12 12 N 1.34781 * 119.99622 * 184.62232 * 10 9 8 13 13 C 1.46501 * 119.99627 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47266 * 35.00212 * 13 12 10 15 15 C 1.50699 * 109.46688 * 155.00040 * 13 12 10 16 16 H 1.08001 * 120.00549 * 359.97438 * 15 13 12 17 17 C 1.37882 * 120.00084 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99652 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00359 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47407 * 89.99995 * 19 17 15 21 21 H 1.48502 * 109.47176 * 210.00416 * 19 17 15 22 22 H 1.48500 * 109.47191 * 329.99857 * 19 17 15 23 23 C 1.52998 * 109.47201 * 274.99596 * 13 12 10 24 24 C 1.53000 * 109.46823 * 65.00430 * 23 13 12 25 25 C 1.38585 * 120.01669 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.47349 * 59.99939 * 1 2 3 27 27 H 1.08996 * 109.47514 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47163 * 300.00086 * 1 2 3 29 29 H 1.09000 * 109.47163 * 239.99914 * 2 1 3 30 30 H 1.09006 * 109.47461 * 120.00309 * 2 1 3 31 31 H 1.08005 * 119.95878 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.94238 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.98022 * 179.97438 * 7 6 5 34 34 H 0.96998 * 119.99888 * 324.92975 * 9 8 7 35 35 H 0.97002 * 120.00128 * 0.02562 * 12 10 9 36 36 H 0.97007 * 119.99977 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.47394 * 185.00187 * 23 13 12 38 38 H 1.09001 * 109.47585 * 305.00196 * 23 13 12 39 39 H 1.09005 * 109.47603 * 299.99662 * 24 23 13 40 40 H 1.08996 * 109.47510 * 59.99908 * 24 23 13 41 41 H 1.09006 * 109.47320 * 180.02562 * 24 23 13 42 42 H 1.07990 * 120.06638 * 0.24664 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1996 0.4248 -0.0005 6 6 5.5695 0.6042 -0.0005 7 6 6.1018 1.8792 -0.0011 8 6 5.2602 2.9840 -0.0011 9 7 5.7993 4.2755 -0.0012 10 6 5.1773 5.2653 -0.6718 11 8 4.1053 5.0573 -1.2063 12 7 5.7438 6.4858 -0.7499 13 6 5.0679 7.5616 -1.4793 14 1 3.9898 7.4657 -1.3515 15 6 5.5209 8.8946 -0.9418 16 1 6.2399 8.9363 -0.1370 17 6 5.0174 10.0611 -1.4774 18 7 4.1414 10.0104 -2.4570 19 14 5.5794 11.7134 -0.8116 20 1 6.7713 12.1728 -1.5689 21 1 4.4849 12.7058 -0.9616 22 1 5.9287 11.5754 0.6251 23 6 5.4157 7.4665 -2.9662 24 6 4.8464 6.1679 -3.5410 25 6 3.8838 2.8057 0.0000 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7864 -0.5731 -0.0005 32 1 6.2256 -0.2538 -0.0001 33 1 7.1730 2.0169 -0.0007 34 1 6.6206 4.4581 0.4815 35 1 6.5992 6.6516 -0.3237 36 1 3.7869 10.8311 -2.8336 37 1 4.9859 8.3171 -3.4951 38 1 6.4990 7.4732 -3.0871 39 1 5.2762 5.3171 -3.0122 40 1 3.7632 6.1612 -3.4201 41 1 5.0945 6.0998 -4.6003 42 1 3.2272 3.6631 0.0048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155820308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:32 Heat of formation + Delta-G solvation = -66.766222 kcal Electronic energy + Delta-G solvation = -23264.719091 eV Core-core repulsion = 19823.242019 eV Total energy + Delta-G solvation = -3441.477072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71825 -40.67695 -38.68647 -37.02300 -35.44686 -34.29764 -32.86198 -32.75364 -30.75577 -30.08204 -28.70628 -25.27888 -24.67145 -23.85611 -22.90683 -21.82327 -21.34890 -19.82602 -19.48221 -18.03410 -17.39325 -17.07990 -16.99076 -16.80779 -16.56311 -16.26963 -15.79818 -15.14500 -14.63409 -14.52125 -14.41247 -14.26689 -14.02635 -13.53939 -13.37055 -13.18743 -13.04402 -12.99504 -12.88507 -12.66111 -12.55375 -12.19087 -12.07554 -11.92153 -11.76703 -11.58783 -11.16433 -11.05244 -10.87178 -10.53682 -9.72474 -9.32062 -8.93616 -8.15484 -6.32848 0.36002 0.52496 1.45428 1.46329 1.56453 1.76414 2.21295 2.33952 2.44486 2.90140 3.14026 3.50757 3.93243 4.07192 4.12635 4.20427 4.33047 4.39020 4.43201 4.49064 4.56746 4.61251 4.71309 4.77190 4.93260 4.93412 5.06567 5.19646 5.22247 5.35786 5.41423 5.42270 5.44945 5.53960 5.55129 5.61505 5.77274 5.87900 5.98493 6.17042 6.30037 6.55101 6.75228 7.26636 7.35712 7.73096 8.90063 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.003378 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.213972 B = 8287.468294 C = 8787.826601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.345 6.345 4 C 0.131 3.869 5 C -0.227 4.227 6 C -0.053 4.053 7 C -0.183 4.183 8 C 0.195 3.805 9 N -0.677 5.677 10 C 0.690 3.310 11 O -0.612 6.612 12 N -0.714 5.714 13 C 0.296 3.704 14 H -0.003 1.003 15 C -0.547 4.547 16 H 0.073 0.927 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.972 3.028 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.192 4.192 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.423 0.577 35 H 0.402 0.598 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.022 0.978 41 H 0.044 0.956 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -21.176 6.493 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.259 6.259 4 C 0.085 3.915 5 C -0.246 4.246 6 C -0.072 4.072 7 C -0.204 4.204 8 C 0.099 3.901 9 N -0.327 5.327 10 C 0.390 3.610 11 O -0.492 6.492 12 N -0.366 5.366 13 C 0.193 3.807 14 H 0.015 0.985 15 C -0.586 4.586 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.553 5.553 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.159 4.159 24 C -0.177 4.177 25 C -0.214 4.214 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.261 0.739 35 H 0.237 0.763 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.725 -20.982 5.866 21.956 hybrid contribution 0.425 1.372 0.414 1.495 sum 3.149 -19.610 6.280 20.830 Atomic orbital electron populations 1.21829 0.92012 1.04273 1.02753 1.23098 0.96621 0.80537 1.02634 1.86086 1.19355 1.31857 1.88648 1.18918 0.82883 0.93695 0.96002 1.21477 0.94649 0.97964 1.10546 1.21142 0.94246 0.97163 0.94619 1.21117 1.00416 0.90827 1.08043 1.17423 0.91120 0.84111 0.97420 1.42509 1.29476 1.06597 1.54101 1.16243 0.83902 0.81304 0.79507 1.90903 1.23155 1.82130 1.52973 1.45433 1.25030 1.08891 1.57284 1.18269 0.91126 0.83085 0.88253 0.98534 1.21561 1.26768 0.90642 1.19588 0.90890 1.25780 0.94690 1.03061 0.94987 1.70059 1.30199 1.29063 1.25990 0.85343 0.77774 0.78231 0.78957 1.19583 1.21374 1.18924 1.21797 0.98527 0.97136 0.98444 1.21635 0.99300 0.98079 0.98699 1.20436 0.95125 0.95889 1.09943 0.92691 0.87442 0.92217 0.90885 0.90247 0.82804 0.81381 0.82732 0.73875 0.76258 0.92592 0.90880 0.93883 0.94152 0.95864 0.93741 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 0.85 5.46 71.98 0.39 1.24 16 3 O -0.34 -10.44 10.13 -92.43 -0.94 -11.38 16 4 C 0.13 4.00 6.68 22.49 0.15 4.15 16 5 C -0.23 -4.92 9.03 22.39 0.20 -4.72 16 6 C -0.05 -0.98 10.03 22.24 0.22 -0.76 16 7 C -0.18 -4.03 9.96 22.41 0.22 -3.80 16 8 C 0.20 6.04 6.30 38.13 0.24 6.28 16 9 N -0.68 -21.03 5.34 -317.22 -1.69 -22.72 16 10 C 0.69 28.74 6.97 179.05 1.25 29.99 16 11 O -0.61 -31.02 10.92 -3.98 -0.04 -31.06 16 12 N -0.71 -29.85 5.03 -461.42 -2.32 -32.17 16 13 C 0.30 15.42 2.24 44.24 0.10 15.52 16 14 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 15 C -0.55 -29.00 8.73 25.60 0.22 -28.78 16 16 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 17 C 0.02 0.81 5.29 84.66 0.45 1.26 16 18 N -0.91 -52.75 11.29 21.45 0.24 -52.51 16 19 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 24 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 25 C -0.19 -7.06 8.63 22.49 0.19 -6.86 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 30 H 0.08 1.14 7.66 -2.38 -0.02 1.12 16 31 H 0.15 2.30 6.29 -2.91 -0.02 2.28 16 32 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.42 9.45 8.84 -92.71 -0.82 8.63 16 35 H 0.40 13.87 8.56 -92.71 -0.79 13.08 16 36 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 37 H 0.07 4.09 5.95 -2.39 -0.01 4.08 16 38 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.87 5.65 -2.38 -0.01 1.86 16 40 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 41 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.10 4.78 6.23 -2.92 -0.02 4.76 16 Total: -1.00 -73.32 342.27 1.87 -71.45 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -0.57 Total: 33.24 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.16 Total: 0.96 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.77 Total: -107.40 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.98 Total: -42.44 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -73.32 1.87 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155820308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.681 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds