Wall clock time and date at job start Tue Mar 31 2020 06:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 H 1.08997 * 109.46907 * 54.99692 * 3 2 1 5 5 C 1.50703 * 109.46878 * 174.99970 * 3 2 1 6 6 H 1.07995 * 119.99669 * 119.72502 * 5 3 2 7 7 C 1.37877 * 119.99674 * 299.99443 * 5 3 2 8 8 N 1.31521 * 119.99831 * 179.72612 * 7 5 3 9 9 Si 1.86800 * 120.00135 * 359.72940 * 7 5 3 10 10 H 1.48495 * 109.47140 * 89.99813 * 9 7 5 11 11 H 1.48504 * 109.46932 * 209.99984 * 9 7 5 12 12 H 1.48497 * 109.47001 * 329.99746 * 9 7 5 13 13 N 1.46504 * 109.46995 * 294.99774 * 3 2 1 14 14 C 1.34773 * 120.00019 * 85.00165 * 13 3 2 15 15 O 1.21589 * 119.99968 * 359.97438 * 14 13 3 16 16 N 1.34772 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.40144 * 120.00283 * 174.38222 * 16 14 13 18 18 C 1.38857 * 120.01528 * 335.17873 * 17 16 14 19 19 C 1.38067 * 119.99005 * 179.72173 * 18 17 16 20 20 C 1.38733 * 120.01465 * 0.55574 * 19 18 17 21 21 O 1.35981 * 119.99250 * 179.70083 * 20 19 18 22 22 C 1.42903 * 116.99523 * 0.02562 * 21 20 19 23 23 C 1.38694 * 120.02771 * 359.71942 * 20 19 18 24 24 C 1.38121 * 120.01579 * 0.02562 * 23 20 19 25 25 C 1.50693 * 120.01029 * 179.97438 * 24 23 20 26 26 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47366 * 300.00567 * 1 2 3 28 28 H 1.09003 * 109.47162 * 60.00406 * 1 2 3 29 29 H 1.08998 * 109.47366 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46639 * 119.99614 * 2 1 3 31 31 H 0.96992 * 120.00006 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99749 * 265.00289 * 13 3 2 33 33 H 0.97003 * 119.99850 * 354.37732 * 16 14 13 34 34 H 1.08008 * 120.00406 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.99761 * 180.27456 * 19 18 17 36 36 H 1.09004 * 109.47038 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.46904 * 299.99703 * 22 21 20 38 38 H 1.09000 * 109.47382 * 59.99465 * 22 21 20 39 39 H 1.07998 * 119.99805 * 180.02562 * 23 20 19 40 40 H 1.09002 * 109.47276 * 270.02062 * 25 24 23 41 41 H 1.08990 * 109.47274 * 30.01917 * 25 24 23 42 42 H 1.09001 * 109.47370 * 150.02389 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8848 -0.6544 7 6 4.1432 0.8784 1.2281 8 7 5.4542 0.8751 1.3336 9 14 3.0959 0.1164 2.5741 10 1 2.8684 -1.3194 2.2712 11 1 3.7964 0.2425 3.8775 12 1 1.7903 0.8205 2.6438 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3415 2.6319 -0.4322 16 7 0.0785 3.2664 -2.5189 17 6 -1.2261 3.7519 -2.6811 18 6 -2.2682 3.2019 -1.9464 19 6 -3.5524 3.6844 -2.1025 20 6 -3.8037 4.7107 -3.0015 21 8 -5.0697 5.1814 -3.1592 22 6 -6.0913 4.5731 -2.3666 23 6 -2.7643 5.2566 -3.7398 24 6 -1.4783 4.7785 -3.5808 25 6 -0.3491 5.3713 -4.3835 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 5.8771 0.4774 2.1106 32 1 2.2720 2.1231 -1.9978 33 1 0.7249 3.3639 -3.2356 34 1 -2.0736 2.3996 -1.2501 35 1 -4.3623 3.2597 -1.5278 36 1 -7.0506 5.0403 -2.5896 37 1 -6.1439 3.5088 -2.5960 38 1 -5.8589 4.7059 -1.3100 39 1 -2.9604 6.0558 -4.4392 40 1 -0.2422 4.8236 -5.3199 41 1 -0.5658 6.4178 -4.5976 42 1 0.5776 5.3013 -3.8139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155973972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:55 Heat of formation + Delta-G solvation = -36.080191 kcal Electronic energy + Delta-G solvation = -23583.800879 eV Core-core repulsion = 20143.654453 eV Total energy + Delta-G solvation = -3440.146426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65166 -39.54179 -37.73899 -35.53607 -34.09322 -32.48793 -32.38057 -31.48849 -29.45633 -27.69791 -26.82603 -26.63758 -23.25512 -22.52935 -21.38630 -20.71996 -19.85727 -18.43469 -17.74894 -17.34793 -16.44442 -15.96625 -15.76919 -15.49667 -14.94246 -14.39050 -14.17435 -14.08344 -13.77397 -13.47260 -13.26626 -13.00737 -12.79918 -12.51924 -12.28022 -12.07643 -12.03719 -11.86561 -11.80842 -11.35524 -11.08278 -10.92040 -10.89568 -10.66017 -9.95711 -9.78766 -9.58464 -9.34466 -9.24363 -8.78240 -8.73829 -8.16939 -7.43705 -6.23426 -4.26135 1.33607 1.51979 3.06252 3.22068 3.25233 3.34412 3.39469 3.51430 3.97247 4.29585 4.69547 4.80572 4.86207 4.98569 5.01985 5.09857 5.10369 5.28935 5.31933 5.40324 5.50414 5.67653 5.80719 5.94975 6.01257 6.04000 6.10916 6.16509 6.41856 6.47951 6.55723 6.64009 6.68945 6.79778 6.93373 7.00352 7.12357 7.28576 7.42059 7.47042 7.51952 8.24595 8.58500 8.75427 9.06366 9.37492 10.88620 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.003727 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.735161 B = 7511.180941 C = 8264.622050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.259 3.741 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.689 5.689 17 C 0.149 3.851 18 C -0.090 4.090 19 C -0.189 4.189 20 C 0.097 3.903 21 O -0.322 6.322 22 C 0.029 3.971 23 C -0.131 4.131 24 C -0.090 4.090 25 C -0.113 4.113 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.403 0.597 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.129 0.871 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 5.867 -11.041 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.155 3.845 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.362 5.362 14 C 0.395 3.605 15 O -0.456 6.456 16 N -0.336 5.336 17 C 0.053 3.947 18 C -0.111 4.111 19 C -0.208 4.208 20 C 0.052 3.948 21 O -0.236 6.236 22 C -0.066 4.066 23 C -0.151 4.151 24 C -0.094 4.094 25 C -0.170 4.170 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.238 0.762 34 H 0.172 0.828 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.287 5.858 -10.127 20.874 hybrid contribution 0.160 -0.651 0.306 0.737 sum -17.127 5.206 -9.822 20.418 Atomic orbital electron populations 1.21867 0.96962 0.98937 1.02245 1.22307 0.94407 1.00021 1.01106 1.19073 0.95441 0.88185 0.81766 0.93169 1.21037 0.88559 1.39988 1.07793 0.90202 1.24822 0.94874 0.95099 0.97679 1.69864 1.08687 1.44461 1.29854 0.86901 0.80991 0.79931 0.80920 1.20213 1.22142 1.18390 1.45459 1.13714 1.58231 1.18796 1.16067 0.83508 0.78774 0.82148 1.90842 1.51830 1.64658 1.38307 1.42799 1.11454 1.61690 1.17672 1.17314 0.83907 0.94954 0.98560 1.21349 0.90101 1.00335 0.99303 1.21127 0.98047 0.99849 1.01766 1.18904 0.84284 0.95010 0.96637 1.86030 1.14650 1.60069 1.62883 1.22998 0.89921 0.98454 0.95274 1.19935 0.89837 1.02836 1.02447 1.19319 0.94824 0.95570 0.99650 1.20714 0.96132 1.01054 0.99063 0.95065 0.92823 0.92974 0.92322 0.92720 0.92243 0.77471 0.76167 0.82821 0.85560 0.88600 0.92816 0.92726 0.85260 0.91028 0.91055 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.04 5.11 -26.73 -0.14 -3.17 16 3 C 0.26 5.99 1.83 -69.08 -0.13 5.86 16 4 H 0.05 1.29 6.62 -51.93 -0.34 0.95 16 5 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 9 Si 0.88 21.48 24.42 -169.99 -4.15 17.33 16 10 H -0.28 -6.49 6.82 56.52 0.39 -6.10 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.71 -13.58 5.03 -59.81 -0.30 -13.88 16 14 C 0.69 12.80 6.94 -86.93 -0.60 12.19 16 15 O -0.58 -12.30 10.64 5.29 0.06 -12.25 16 16 N -0.69 -9.99 4.99 -14.19 -0.07 -10.06 16 17 C 0.15 2.18 6.41 -83.61 -0.54 1.64 16 18 C -0.09 -1.40 8.71 -39.42 -0.34 -1.74 16 19 C -0.19 -2.53 9.03 -39.46 -0.36 -2.88 16 20 C 0.10 1.26 6.69 -39.23 -0.26 1.00 16 21 O -0.32 -3.81 10.50 -19.68 -0.21 -4.01 16 22 C 0.03 0.23 9.81 101.05 0.99 1.23 16 23 C -0.13 -1.61 9.63 -39.46 -0.38 -1.99 16 24 C -0.09 -1.12 5.89 -104.45 -0.62 -1.73 16 25 C -0.11 -1.04 9.45 36.00 0.34 -0.70 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 28 H 0.05 1.00 5.64 -51.93 -0.29 0.71 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.26 3.23 -51.93 -0.17 1.09 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.39 6.53 8.56 -40.82 -0.35 6.18 16 33 H 0.40 4.58 7.40 -40.82 -0.30 4.28 16 34 H 0.15 2.68 5.78 -52.48 -0.30 2.37 16 35 H 0.13 1.44 6.29 -52.48 -0.33 1.11 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 38 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.07 0.63 6.97 -51.93 -0.36 0.27 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -31.60 331.45 -6.83 -38.42 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.79 Total: 10.02 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.13 Total: -5.21 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.40 Total: -49.30 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.15 Total: -16.26 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.15 Total: 17.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.60 -6.83 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155973972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.344 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds