Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 H 1.08997 * 109.46907 * 54.99692 * 3 2 1 5 5 C 1.50703 * 109.46878 * 174.99970 * 3 2 1 6 6 H 1.07995 * 119.99669 * 119.72502 * 5 3 2 7 7 C 1.37877 * 119.99674 * 299.99443 * 5 3 2 8 8 N 1.31521 * 119.99831 * 179.72612 * 7 5 3 9 9 Si 1.86800 * 120.00135 * 359.72940 * 7 5 3 10 10 H 1.48495 * 109.47140 * 89.99813 * 9 7 5 11 11 H 1.48504 * 109.46932 * 209.99984 * 9 7 5 12 12 H 1.48497 * 109.47001 * 329.99746 * 9 7 5 13 13 N 1.46504 * 109.46995 * 294.99774 * 3 2 1 14 14 C 1.34773 * 120.00019 * 85.00165 * 13 3 2 15 15 O 1.21589 * 119.99968 * 359.97438 * 14 13 3 16 16 N 1.34772 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.40144 * 120.00283 * 174.38222 * 16 14 13 18 18 C 1.38857 * 120.01528 * 335.17873 * 17 16 14 19 19 C 1.38067 * 119.99005 * 179.72173 * 18 17 16 20 20 C 1.38733 * 120.01465 * 0.55574 * 19 18 17 21 21 O 1.35981 * 119.99250 * 179.70083 * 20 19 18 22 22 C 1.42903 * 116.99523 * 0.02562 * 21 20 19 23 23 C 1.38694 * 120.02771 * 359.71942 * 20 19 18 24 24 C 1.38121 * 120.01579 * 0.02562 * 23 20 19 25 25 C 1.50693 * 120.01029 * 179.97438 * 24 23 20 26 26 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47366 * 300.00567 * 1 2 3 28 28 H 1.09003 * 109.47162 * 60.00406 * 1 2 3 29 29 H 1.08998 * 109.47366 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46639 * 119.99614 * 2 1 3 31 31 H 0.96992 * 120.00006 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99749 * 265.00289 * 13 3 2 33 33 H 0.97003 * 119.99850 * 354.37732 * 16 14 13 34 34 H 1.08008 * 120.00406 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.99761 * 180.27456 * 19 18 17 36 36 H 1.09004 * 109.47038 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.46904 * 299.99703 * 22 21 20 38 38 H 1.09000 * 109.47382 * 59.99465 * 22 21 20 39 39 H 1.07998 * 119.99805 * 180.02562 * 23 20 19 40 40 H 1.09002 * 109.47276 * 270.02062 * 25 24 23 41 41 H 1.08990 * 109.47274 * 30.01917 * 25 24 23 42 42 H 1.09001 * 109.47370 * 150.02389 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8848 -0.6544 7 6 4.1432 0.8784 1.2281 8 7 5.4542 0.8751 1.3336 9 14 3.0959 0.1164 2.5741 10 1 2.8684 -1.3194 2.2712 11 1 3.7964 0.2425 3.8775 12 1 1.7903 0.8205 2.6438 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3415 2.6319 -0.4322 16 7 0.0785 3.2664 -2.5189 17 6 -1.2261 3.7519 -2.6811 18 6 -2.2682 3.2019 -1.9464 19 6 -3.5524 3.6844 -2.1025 20 6 -3.8037 4.7107 -3.0015 21 8 -5.0697 5.1814 -3.1592 22 6 -6.0913 4.5731 -2.3666 23 6 -2.7643 5.2566 -3.7398 24 6 -1.4783 4.7785 -3.5808 25 6 -0.3491 5.3713 -4.3835 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 5.8771 0.4774 2.1106 32 1 2.2720 2.1231 -1.9978 33 1 0.7249 3.3639 -3.2356 34 1 -2.0736 2.3996 -1.2501 35 1 -4.3623 3.2597 -1.5278 36 1 -7.0506 5.0403 -2.5896 37 1 -6.1439 3.5088 -2.5960 38 1 -5.8589 4.7059 -1.3100 39 1 -2.9604 6.0558 -4.4392 40 1 -0.2422 4.8236 -5.3199 41 1 -0.5658 6.4178 -4.5976 42 1 0.5776 5.3013 -3.8139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155973972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -58.021551 kcal Electronic energy + Delta-G solvation = -23584.752328 eV Core-core repulsion = 20143.654453 eV Total energy + Delta-G solvation = -3441.097875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86300 -40.68820 -38.85046 -37.15799 -35.38894 -34.38566 -33.42114 -33.09390 -30.48816 -29.36646 -27.89587 -27.43199 -24.82240 -24.01509 -22.66284 -21.88667 -21.48477 -19.92893 -18.80634 -18.52174 -18.17769 -17.29057 -16.99747 -16.60526 -16.41602 -16.02661 -15.22830 -15.18883 -15.12330 -14.83206 -14.60525 -14.24132 -14.01641 -13.86738 -13.66607 -13.62486 -13.10812 -12.96889 -12.81630 -12.76917 -12.68384 -12.43592 -12.25514 -11.87662 -11.84669 -11.35294 -11.23453 -11.03574 -10.85108 -10.73451 -9.81831 -9.73056 -8.52488 -8.37618 -6.42988 0.33820 0.44988 1.28050 1.36443 1.46168 1.74215 2.15909 2.26794 2.43050 2.85496 2.98690 3.36224 3.87384 3.92057 4.15595 4.25284 4.33146 4.33426 4.39484 4.41162 4.47218 4.52306 4.65172 4.74398 4.83199 4.84920 4.99307 5.03135 5.03968 5.12320 5.22089 5.27118 5.39736 5.42883 5.44691 5.51101 5.56373 5.67639 5.91107 6.02310 6.30709 6.48911 6.59896 7.14223 7.24340 7.63745 8.77534 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.003727 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.735161 B = 7511.180941 C = 8264.622050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.269 3.731 4 H 0.023 0.977 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.710 5.710 14 C 0.695 3.305 15 O -0.607 6.607 16 N -0.671 5.671 17 C 0.122 3.878 18 C -0.110 4.110 19 C -0.196 4.196 20 C 0.097 3.903 21 O -0.331 6.331 22 C 0.019 3.981 23 C -0.136 4.136 24 C -0.080 4.080 25 C -0.113 4.113 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.270 0.730 32 H 0.404 0.596 33 H 0.418 0.582 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.679 6.283 -12.444 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.164 3.836 4 H 0.041 0.959 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.363 5.363 14 C 0.396 3.604 15 O -0.488 6.488 16 N -0.320 5.320 17 C 0.027 3.973 18 C -0.131 4.131 19 C -0.215 4.215 20 C 0.051 3.949 21 O -0.245 6.245 22 C -0.075 4.075 23 C -0.155 4.155 24 C -0.083 4.083 25 C -0.170 4.170 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.257 0.743 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.170 0.830 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.199 6.291 -11.592 23.293 hybrid contribution 0.644 -0.663 0.642 1.125 sum -18.555 5.629 -10.950 22.268 Atomic orbital electron populations 1.21737 0.95256 1.00340 1.01550 1.22221 0.95833 0.98548 1.01025 1.18667 0.92999 0.89303 0.82679 0.95869 1.21278 0.90283 1.38625 1.06876 0.92428 1.25521 0.95707 0.95857 0.99847 1.69971 1.10253 1.46180 1.30877 0.86051 0.79336 0.79988 0.78361 1.18492 1.22164 1.18444 1.45141 1.14537 1.58614 1.17987 1.16091 0.82760 0.78718 0.82826 1.90834 1.52518 1.65659 1.39755 1.42485 1.12019 1.60708 1.16776 1.17510 0.83376 0.96428 1.00004 1.21247 0.91482 1.00584 0.99795 1.21233 0.97695 1.00234 1.02315 1.19091 0.85185 0.94482 0.96112 1.86027 1.14564 1.60422 1.63521 1.23288 0.89961 0.99183 0.95076 1.20290 0.89560 1.03142 1.02529 1.19626 0.95948 0.94216 0.98538 1.20816 0.94675 1.02144 0.99334 0.92500 0.94381 0.92874 0.91332 0.93759 0.92078 0.76089 0.74333 0.85264 0.84212 0.85995 0.92076 0.92544 0.83001 0.88968 0.89397 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.14 -5.85 5.11 30.60 0.16 -5.69 16 3 C 0.27 12.46 1.83 44.25 0.08 12.54 16 4 H 0.02 1.22 6.62 -2.39 -0.02 1.20 16 5 C -0.53 -28.58 9.31 25.60 0.24 -28.34 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.70 5.45 84.65 0.46 2.17 16 8 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 9 Si 0.94 44.47 24.42 68.60 1.68 46.15 16 10 H -0.26 -11.58 6.82 99.48 0.68 -10.90 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 13 N -0.71 -27.03 5.03 -461.40 -2.32 -29.35 16 14 C 0.70 25.52 6.94 179.06 1.24 26.76 16 15 O -0.61 -26.17 10.64 -4.00 -0.04 -26.21 16 16 N -0.67 -18.89 4.99 -317.07 -1.58 -20.47 16 17 C 0.12 3.47 6.41 38.10 0.24 3.71 16 18 C -0.11 -3.41 8.71 22.38 0.19 -3.22 16 19 C -0.20 -5.10 9.03 22.35 0.20 -4.90 16 20 C 0.10 2.35 6.69 22.50 0.15 2.50 16 21 O -0.33 -7.11 10.50 -93.34 -0.98 -8.09 16 22 C 0.02 0.27 9.81 113.37 1.11 1.39 16 23 C -0.14 -3.01 9.63 22.35 0.22 -2.79 16 24 C -0.08 -1.81 5.89 -19.76 -0.12 -1.93 16 25 C -0.11 -1.75 9.45 71.23 0.67 -1.07 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.56 7.84 -2.39 -0.02 1.54 16 28 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 29 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.04 1.97 3.23 -2.38 -0.01 1.97 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.40 13.29 8.56 -92.71 -0.79 12.50 16 33 H 0.42 8.88 7.40 -92.71 -0.69 8.20 16 34 H 0.13 4.63 5.78 -2.91 -0.02 4.61 16 35 H 0.14 3.08 6.29 -2.91 -0.02 3.06 16 36 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.78 7.66 -2.38 -0.02 0.76 16 38 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 39 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 42 H 0.07 1.06 6.97 -2.39 -0.02 1.05 16 Total: -1.00 -68.73 331.45 2.01 -66.72 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.50 Total: 29.90 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.47 Total: -3.30 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.60 Total: -105.17 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.02 Total: -34.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.68 Total: 46.15 kcal Total: -68.73 2.01 -66.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155973972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.696 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds