Wall clock time and date at job start Tue Mar 31 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 H 1.09008 * 109.46891 * 55.00246 * 3 2 1 5 5 C 1.50704 * 109.47061 * 174.99892 * 3 2 1 6 6 O 1.21283 * 119.99957 * 120.00279 * 5 3 2 7 7 N 1.34776 * 119.99770 * 299.99907 * 5 3 2 8 8 C 1.40109 * 120.00175 * 185.23235 * 7 5 3 9 9 C 1.38848 * 120.01272 * 32.12290 * 8 7 5 10 10 C 1.38090 * 119.98807 * 179.72208 * 9 8 7 11 11 C 1.38722 * 120.01013 * 0.25234 * 10 9 8 12 12 O 1.35971 * 119.98248 * 180.02562 * 11 10 9 13 13 C 1.42897 * 117.00135 * 180.02562 * 12 11 10 14 14 C 1.38718 * 120.03279 * 0.02562 * 11 10 9 15 15 C 1.38090 * 120.01632 * 359.97438 * 14 11 10 16 16 N 1.46496 * 109.47367 * 294.99998 * 3 2 1 17 17 C 1.46498 * 119.99730 * 299.99719 * 16 3 2 18 18 C 1.36938 * 120.00302 * 120.00221 * 16 3 2 19 19 H 1.08003 * 119.99581 * 20.70202 * 18 16 3 20 20 C 1.38813 * 120.00136 * 200.71292 * 18 16 3 21 21 N 1.31620 * 119.99566 * 15.65232 * 20 18 16 22 22 Si 1.86793 * 119.99905 * 195.65388 * 20 18 16 23 23 H 1.48505 * 109.47066 * 59.99980 * 22 20 18 24 24 H 1.48503 * 109.46919 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47243 * 299.99965 * 22 20 18 26 26 H 1.09001 * 109.46946 * 60.00087 * 1 2 3 27 27 H 1.09001 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47082 * 300.00295 * 1 2 3 29 29 H 1.09001 * 109.47464 * 239.99917 * 2 1 3 30 30 H 1.09001 * 109.46946 * 119.99913 * 2 1 3 31 31 H 0.97005 * 120.00440 * 5.23980 * 7 5 3 32 32 H 1.08008 * 120.00646 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.99403 * 180.28143 * 10 9 8 34 34 H 1.09006 * 109.47319 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47184 * 300.00035 * 13 12 11 36 36 H 1.08999 * 109.47196 * 60.00110 * 13 12 11 37 37 H 1.08000 * 119.99557 * 180.02562 * 14 11 10 38 38 H 1.07997 * 120.00646 * 179.97438 * 15 14 11 39 39 H 1.09002 * 109.47216 * 95.19470 * 17 16 3 40 40 H 1.09005 * 109.47221 * 215.19507 * 17 16 3 41 41 H 1.08998 * 109.47420 * 335.19535 * 17 16 3 42 42 H 0.97001 * 119.99677 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 8 4.2217 1.9436 -0.7477 7 7 4.1297 0.8912 1.2032 8 6 5.5171 0.9890 1.3726 9 6 6.1962 2.1076 0.9086 10 6 7.5628 2.2061 1.0810 11 6 8.2578 1.1854 1.7130 12 8 9.6033 1.2832 1.8828 13 6 10.2548 0.1951 2.5413 14 6 7.5807 0.0649 2.1717 15 6 6.2142 -0.0349 1.9999 16 7 1.6524 2.0975 -1.2518 17 6 2.1140 1.5590 -2.5336 18 6 0.8589 3.2132 -1.2237 19 1 0.7898 3.8041 -0.3223 20 6 0.1431 3.5845 -2.3536 21 7 -0.0259 2.7261 -3.3370 22 14 -0.5800 5.3022 -2.4784 23 1 0.5117 6.3058 -2.3994 24 1 -1.2918 5.4466 -3.7738 25 1 -1.5343 5.5199 -1.3617 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5923 0.4252 1.8628 32 1 5.6552 2.9024 0.4165 33 1 8.0905 3.0782 0.7241 34 1 11.3231 0.4004 2.6119 35 1 9.8411 0.0762 3.5427 36 1 10.0974 -0.7209 1.9719 37 1 8.1223 -0.7293 2.6640 38 1 5.6873 -0.9075 2.3568 39 1 1.3496 0.9016 -2.9479 40 1 2.3016 2.3797 -3.2261 41 1 3.0342 0.9952 -2.3807 42 1 -0.5257 2.9856 -4.1267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170778273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:14 Heat of formation + Delta-G solvation = -16.662123 kcal Electronic energy + Delta-G solvation = -23538.855172 eV Core-core repulsion = 20099.550776 eV Total energy + Delta-G solvation = -3439.304395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44815 -39.42680 -37.37945 -35.68776 -34.11478 -32.73922 -31.07287 -30.23142 -29.19389 -27.48149 -26.34328 -25.82872 -22.84908 -22.63106 -22.13880 -20.79884 -19.21271 -18.22788 -17.39475 -16.94308 -16.42081 -15.85225 -15.72911 -15.02526 -14.70946 -14.31462 -13.97395 -13.87836 -13.67421 -13.22410 -13.14393 -12.88460 -12.70754 -12.64945 -12.09052 -11.79522 -11.65755 -11.38903 -11.21451 -10.93225 -10.86711 -10.75772 -10.48309 -10.34808 -10.22984 -10.03131 -9.82103 -9.67477 -9.17533 -8.89694 -8.48703 -7.56510 -6.79250 -5.71880 -3.16041 1.36764 1.43506 3.16040 3.20845 3.37950 3.46162 3.46615 3.49593 3.89740 4.50467 4.72538 4.85867 4.94204 4.95500 5.19771 5.24518 5.33407 5.36282 5.42557 5.50540 5.67696 5.78181 5.79446 5.99547 6.04005 6.06114 6.27458 6.29627 6.38725 6.47887 6.52172 6.62608 6.80474 6.96021 7.04614 7.19692 7.38560 7.53725 7.73187 7.79682 7.85726 8.35848 8.71916 9.22406 9.84242 10.31944 11.32215 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.003590 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.934523 B = 7797.825140 C = 8471.091326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.164 3.836 4 H 0.092 0.908 5 C 0.489 3.511 6 O -0.504 6.504 7 N -0.684 5.684 8 C 0.127 3.873 9 C -0.085 4.085 10 C -0.129 4.129 11 C 0.098 3.902 12 O -0.321 6.321 13 C 0.029 3.971 14 C -0.189 4.189 15 C -0.117 4.117 16 N -0.566 5.566 17 C 0.168 3.832 18 C -0.259 4.259 19 H 0.067 0.933 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.904 3.096 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.405 0.595 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.027 0.973 40 H 0.040 0.960 41 H 0.007 0.993 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.912 -8.224 13.388 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.050 3.950 4 H 0.110 0.890 5 C 0.275 3.725 6 O -0.376 6.376 7 N -0.332 5.332 8 C 0.032 3.968 9 C -0.105 4.105 10 C -0.148 4.148 11 C 0.052 3.948 12 O -0.235 6.235 13 C -0.066 4.066 14 C -0.208 4.208 15 C -0.138 4.138 16 N -0.286 5.286 17 C 0.024 3.976 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.241 0.759 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.322 -7.623 12.415 19.742 hybrid contribution -0.567 0.344 0.322 0.737 sum 12.755 -7.279 12.737 19.440 Atomic orbital electron populations 1.21607 0.94628 0.99873 1.03536 1.21967 0.97739 0.96542 1.00466 1.20325 0.87203 0.94328 0.93156 0.89046 1.23200 0.93349 0.76151 0.79769 1.90642 1.65366 1.42653 1.38973 1.44132 1.05004 1.57955 1.26073 1.17829 0.84436 0.94201 1.00299 1.21122 0.93299 0.97296 0.98776 1.20336 0.93467 0.98833 1.02178 1.18957 0.82467 0.95211 0.98118 1.86069 1.18137 1.44003 1.75246 1.22994 0.97728 0.89425 0.96488 1.20933 0.94876 0.98642 1.06348 1.20658 0.93491 0.97394 1.02282 1.43611 1.55426 1.30461 0.99075 1.20745 0.93463 0.97180 0.86188 1.19116 1.20010 1.00570 0.99122 0.91489 1.24889 0.98357 0.98110 0.97763 1.70096 1.43022 1.32833 1.08487 0.86350 0.78673 0.84684 0.76897 1.21092 1.21649 1.20952 0.89948 0.94383 0.93636 0.92084 0.93522 0.75924 0.83731 0.85115 0.88560 0.92879 0.92840 0.85536 0.85645 0.95433 0.94077 0.97492 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.80 37.16 0.36 -2.04 16 2 C -0.13 -2.13 5.31 -26.73 -0.14 -2.27 16 3 C 0.16 3.21 2.53 -69.08 -0.17 3.03 16 4 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 5 C 0.49 9.26 6.60 -10.98 -0.07 9.19 16 6 O -0.50 -11.53 12.21 5.55 0.07 -11.46 16 7 N -0.68 -9.98 5.26 -9.83 -0.05 -10.03 16 8 C 0.13 1.88 6.31 -83.62 -0.53 1.35 16 9 C -0.08 -1.35 8.66 -39.41 -0.34 -1.70 16 10 C -0.13 -1.85 9.98 -39.46 -0.39 -2.24 16 11 C 0.10 1.28 6.69 -39.23 -0.26 1.01 16 12 O -0.32 -3.83 10.50 -19.65 -0.21 -4.03 16 13 C 0.03 0.22 9.81 101.05 0.99 1.21 16 14 C -0.19 -2.17 9.03 -39.46 -0.36 -2.53 16 15 C -0.12 -1.42 9.96 -39.41 -0.39 -1.81 16 16 N -0.57 -14.01 2.04 -174.81 -0.36 -14.37 16 17 C 0.17 4.34 7.38 59.85 0.44 4.79 16 18 C -0.26 -6.99 9.60 -15.06 -0.14 -7.14 16 19 H 0.07 1.76 7.82 -52.48 -0.41 1.35 16 20 C 0.01 0.21 5.05 -17.43 -0.09 0.13 16 21 N -0.90 -25.91 10.73 55.49 0.60 -25.32 16 22 Si 0.90 21.87 29.58 -169.99 -5.03 16.85 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.08 1.80 7.75 -51.93 -0.40 1.40 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.11 7.51 -51.93 -0.39 0.72 16 30 H 0.05 0.60 7.32 -51.93 -0.38 0.22 16 31 H 0.41 4.51 8.02 -40.82 -0.33 4.18 16 32 H 0.15 2.63 6.32 -52.48 -0.33 2.29 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 36 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 37 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.03 0.74 7.38 -51.93 -0.38 0.36 16 40 H 0.04 1.16 7.26 -51.93 -0.38 0.79 16 41 H 0.01 0.16 6.43 -51.93 -0.33 -0.17 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -32.22 342.45 -7.04 -39.25 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.12 Total: 2.96 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.10 Total: 0.98 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.19 Total: -49.71 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.14 Total: -15.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.22 -7.04 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.593 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds