Wall clock time and date at job start Tue Mar 31 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 H 1.09008 * 109.46891 * 55.00246 * 3 2 1 5 5 C 1.50704 * 109.47061 * 174.99892 * 3 2 1 6 6 O 1.21283 * 119.99957 * 120.00279 * 5 3 2 7 7 N 1.34776 * 119.99770 * 299.99907 * 5 3 2 8 8 C 1.40109 * 120.00175 * 185.23235 * 7 5 3 9 9 C 1.38848 * 120.01272 * 32.12290 * 8 7 5 10 10 C 1.38090 * 119.98807 * 179.72208 * 9 8 7 11 11 C 1.38722 * 120.01013 * 0.25234 * 10 9 8 12 12 O 1.35971 * 119.98248 * 180.02562 * 11 10 9 13 13 C 1.42897 * 117.00135 * 180.02562 * 12 11 10 14 14 C 1.38718 * 120.03279 * 0.02562 * 11 10 9 15 15 C 1.38090 * 120.01632 * 359.97438 * 14 11 10 16 16 N 1.46496 * 109.47367 * 294.99998 * 3 2 1 17 17 C 1.46498 * 119.99730 * 299.99719 * 16 3 2 18 18 C 1.36938 * 120.00302 * 120.00221 * 16 3 2 19 19 H 1.08003 * 119.99581 * 20.70202 * 18 16 3 20 20 C 1.38813 * 120.00136 * 200.71292 * 18 16 3 21 21 N 1.31620 * 119.99566 * 15.65232 * 20 18 16 22 22 Si 1.86793 * 119.99905 * 195.65388 * 20 18 16 23 23 H 1.48505 * 109.47066 * 59.99980 * 22 20 18 24 24 H 1.48503 * 109.46919 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47243 * 299.99965 * 22 20 18 26 26 H 1.09001 * 109.46946 * 60.00087 * 1 2 3 27 27 H 1.09001 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47082 * 300.00295 * 1 2 3 29 29 H 1.09001 * 109.47464 * 239.99917 * 2 1 3 30 30 H 1.09001 * 109.46946 * 119.99913 * 2 1 3 31 31 H 0.97005 * 120.00440 * 5.23980 * 7 5 3 32 32 H 1.08008 * 120.00646 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.99403 * 180.28143 * 10 9 8 34 34 H 1.09006 * 109.47319 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47184 * 300.00035 * 13 12 11 36 36 H 1.08999 * 109.47196 * 60.00110 * 13 12 11 37 37 H 1.08000 * 119.99557 * 180.02562 * 14 11 10 38 38 H 1.07997 * 120.00646 * 179.97438 * 15 14 11 39 39 H 1.09002 * 109.47216 * 95.19470 * 17 16 3 40 40 H 1.09005 * 109.47221 * 215.19507 * 17 16 3 41 41 H 1.08998 * 109.47420 * 335.19535 * 17 16 3 42 42 H 0.97001 * 119.99677 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 8 4.2217 1.9436 -0.7477 7 7 4.1297 0.8912 1.2032 8 6 5.5171 0.9890 1.3726 9 6 6.1962 2.1076 0.9086 10 6 7.5628 2.2061 1.0810 11 6 8.2578 1.1854 1.7130 12 8 9.6033 1.2832 1.8828 13 6 10.2548 0.1951 2.5413 14 6 7.5807 0.0649 2.1717 15 6 6.2142 -0.0349 1.9999 16 7 1.6524 2.0975 -1.2518 17 6 2.1140 1.5590 -2.5336 18 6 0.8589 3.2132 -1.2237 19 1 0.7898 3.8041 -0.3223 20 6 0.1431 3.5845 -2.3536 21 7 -0.0259 2.7261 -3.3370 22 14 -0.5800 5.3022 -2.4784 23 1 0.5117 6.3058 -2.3994 24 1 -1.2918 5.4466 -3.7738 25 1 -1.5343 5.5199 -1.3617 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5923 0.4252 1.8628 32 1 5.6552 2.9024 0.4165 33 1 8.0905 3.0782 0.7241 34 1 11.3231 0.4004 2.6119 35 1 9.8411 0.0762 3.5427 36 1 10.0974 -0.7209 1.9719 37 1 8.1223 -0.7293 2.6640 38 1 5.6873 -0.9075 2.3568 39 1 1.3496 0.9016 -2.9479 40 1 2.3016 2.3797 -3.2261 41 1 3.0342 0.9952 -2.3807 42 1 -0.5257 2.9856 -4.1267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:13 Heat of formation + Delta-G solvation = -37.364035 kcal Electronic energy + Delta-G solvation = -23539.752874 eV Core-core repulsion = 20099.550776 eV Total energy + Delta-G solvation = -3440.202098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64605 -40.59415 -38.56264 -37.34548 -35.46498 -34.46260 -32.14727 -32.03477 -30.29489 -28.51126 -27.97336 -27.53426 -24.36600 -23.90988 -23.41464 -22.13719 -20.69465 -19.18151 -18.96854 -18.45770 -17.84982 -16.92474 -16.83799 -16.56347 -16.12278 -15.80439 -15.40529 -15.20020 -14.88574 -14.73276 -14.64172 -14.21824 -13.78403 -13.69717 -13.58560 -13.23235 -12.90260 -12.88884 -12.73435 -12.60871 -12.40267 -12.27447 -12.18186 -12.01100 -11.79533 -11.69141 -11.61267 -10.93318 -10.74950 -10.46441 -9.97775 -8.80486 -8.64900 -7.81220 -5.26754 0.34350 0.35622 1.45165 1.50144 1.55102 1.74556 2.12848 2.44143 2.54158 2.82784 3.33623 3.58238 3.81548 3.92899 3.95690 4.22323 4.29036 4.32836 4.38073 4.46037 4.51597 4.61785 4.64491 4.76572 4.82307 4.88268 4.94848 5.03027 5.03994 5.16431 5.31301 5.35677 5.38986 5.42750 5.52414 5.61866 5.66323 5.74287 5.90983 6.28194 6.48937 6.58336 7.12870 7.33569 7.84631 8.28602 9.21916 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.003590 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.934523 B = 7797.825140 C = 8471.091326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C 0.158 3.842 4 H 0.104 0.896 5 C 0.493 3.507 6 O -0.552 6.552 7 N -0.661 5.661 8 C 0.102 3.898 9 C -0.106 4.106 10 C -0.148 4.148 11 C 0.099 3.901 12 O -0.339 6.339 13 C 0.017 3.983 14 C -0.181 4.181 15 C -0.101 4.101 16 N -0.582 5.582 17 C 0.196 3.804 18 C -0.263 4.263 19 H 0.073 0.927 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.964 3.036 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.269 1.269 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.425 0.575 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.008 0.992 40 H 0.002 0.998 41 H 0.014 0.986 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.041 -10.348 16.655 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.046 3.954 4 H 0.121 0.879 5 C 0.280 3.720 6 O -0.428 6.428 7 N -0.309 5.309 8 C 0.008 3.992 9 C -0.126 4.126 10 C -0.168 4.168 11 C 0.054 3.946 12 O -0.253 6.253 13 C -0.077 4.077 14 C -0.200 4.200 15 C -0.121 4.121 16 N -0.303 5.303 17 C 0.051 3.949 18 C -0.393 4.393 19 H 0.090 0.910 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.792 3.208 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.194 1.194 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.264 0.736 32 H 0.129 0.871 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.182 0.818 38 H 0.180 0.820 39 H 0.027 0.973 40 H 0.021 0.979 41 H 0.033 0.967 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.474 -9.787 15.783 23.545 hybrid contribution -0.710 0.933 -0.542 1.292 sum 13.764 -8.854 15.241 22.364 Atomic orbital electron populations 1.21511 0.94927 1.00953 1.01558 1.21879 0.97276 0.94410 1.02106 1.20627 0.87714 0.95967 0.91089 0.87861 1.22757 0.92833 0.76076 0.80349 1.90641 1.66084 1.45011 1.41090 1.43655 1.05476 1.56823 1.24983 1.17961 0.84161 0.95017 1.02064 1.20931 0.94089 0.97590 1.00039 1.20359 0.93127 0.99896 1.03375 1.19058 0.83274 0.95075 0.97206 1.86058 1.17452 1.46124 1.75648 1.23359 0.98624 0.88644 0.97074 1.21346 0.94787 0.98684 1.05203 1.21011 0.93747 0.97214 1.00104 1.43676 1.55493 1.30744 1.00346 1.20284 0.92983 0.95222 0.86391 1.19450 1.19258 1.01355 0.99203 0.90971 1.25622 0.99535 1.01268 0.97834 1.70244 1.44308 1.34283 1.08852 0.85397 0.77908 0.80567 0.76901 1.21494 1.22123 1.19397 0.95214 0.91800 0.92211 0.93785 0.88287 0.73576 0.87126 0.85316 0.86582 0.91227 0.91675 0.81836 0.81964 0.97342 0.97920 0.96704 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.80 71.98 0.71 -3.66 16 2 C -0.12 -3.68 5.31 30.60 0.16 -3.51 16 3 C 0.16 6.08 2.53 44.25 0.11 6.19 16 4 H 0.10 3.70 7.85 -2.38 -0.02 3.68 16 5 C 0.49 18.50 6.60 87.66 0.58 19.08 16 6 O -0.55 -26.09 12.21 -3.04 -0.04 -26.13 16 7 N -0.66 -17.88 5.26 -303.40 -1.60 -19.48 16 8 C 0.10 2.84 6.31 38.11 0.24 3.08 16 9 C -0.11 -3.47 8.66 22.38 0.19 -3.28 16 10 C -0.15 -4.30 9.98 22.35 0.22 -4.07 16 11 C 0.10 2.40 6.69 22.50 0.15 2.55 16 12 O -0.34 -7.32 10.50 -93.22 -0.98 -8.30 16 13 C 0.02 0.19 9.81 113.37 1.11 1.30 16 14 C -0.18 -3.44 9.03 22.35 0.20 -3.23 16 15 C -0.10 -2.02 9.96 22.38 0.22 -1.80 16 16 N -0.58 -29.57 2.04 -706.97 -1.44 -31.01 16 17 C 0.20 10.62 7.38 127.77 0.94 11.56 16 18 C -0.26 -14.52 9.60 84.03 0.81 -13.71 16 19 H 0.07 3.82 7.82 -2.91 -0.02 3.80 16 20 C -0.05 -2.67 5.05 84.86 0.43 -2.25 16 21 N -0.93 -55.88 10.73 21.65 0.23 -55.65 16 22 Si 0.96 46.07 29.58 68.60 2.03 48.10 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H 0.03 1.29 7.75 -2.39 -0.02 1.27 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 30 H 0.10 2.10 7.32 -2.39 -0.02 2.08 16 31 H 0.43 7.78 8.02 -92.70 -0.74 7.03 16 32 H 0.11 4.33 6.32 -2.91 -0.02 4.32 16 33 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 34 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 36 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 37 H 0.16 1.88 6.29 -2.91 -0.02 1.86 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 40 H 0.00 0.12 7.26 -2.38 -0.02 0.10 16 41 H 0.01 0.75 6.43 -2.39 -0.02 0.73 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -75.12 342.45 4.57 -70.54 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.28 Total: 13.67 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.08 Total: 8.25 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -2.81 Total: -106.14 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.02 Total: -34.42 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.12 4.57 -70.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.180 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds