Wall clock time and date at job start Tue Mar 31 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47116 * 2 1 4 4 H 1.09000 * 109.47066 * 55.00157 * 3 2 1 5 5 C 1.52996 * 109.47501 * 295.00092 * 3 2 1 6 6 C 1.50703 * 109.47029 * 175.00113 * 3 2 1 7 7 O 1.21283 * 119.99854 * 0.02562 * 6 3 2 8 8 N 1.34776 * 119.99773 * 180.02562 * 6 3 2 9 9 C 1.39584 * 119.99545 * 179.97438 * 8 6 3 10 10 N 1.32271 * 119.72915 * 0.02562 * 9 8 6 11 11 C 1.31955 * 121.69162 * 179.70903 * 10 9 8 12 12 C 1.38088 * 120.95362 * 0.53593 * 11 10 9 13 13 C 1.38783 * 119.35398 * 359.47549 * 12 11 10 14 14 C 1.38801 * 118.44449 * 0.25126 * 13 12 11 15 15 O 1.35976 * 120.49468 * 179.97438 * 14 13 12 16 16 C 1.42903 * 117.00045 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47268 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99542 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00130 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46887 * 89.99925 * 22 20 18 24 24 H 1.48497 * 109.46825 * 210.00014 * 22 20 18 25 25 H 1.48496 * 109.47137 * 330.00043 * 22 20 18 26 26 H 1.08999 * 109.47017 * 300.00244 * 1 2 3 27 27 H 1.09001 * 109.46785 * 59.99874 * 1 2 3 28 28 H 1.08999 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46907 * 240.00024 * 2 1 3 30 30 H 1.08994 * 109.46978 * 120.00414 * 2 1 3 31 31 H 1.09001 * 109.46909 * 59.99723 * 5 3 2 32 32 H 1.08999 * 109.47357 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47013 * 300.00096 * 5 3 2 34 34 H 0.96998 * 120.00382 * 0.02562 * 8 6 3 35 35 H 1.08003 * 119.52523 * 180.26451 * 11 10 9 36 36 H 1.08002 * 120.32577 * 179.75677 * 12 11 10 37 37 H 1.07999 * 120.77239 * 180.27565 * 13 12 11 38 38 H 1.08997 * 109.46925 * 300.00077 * 16 15 14 39 39 H 1.08998 * 109.47137 * 59.99668 * 16 15 14 40 40 H 1.08998 * 109.47065 * 300.00411 * 17 16 15 41 41 H 1.09006 * 109.46838 * 60.00226 * 17 16 15 42 42 H 0.97009 * 119.99926 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5420 1.4442 0.1238 7 8 4.1451 0.3950 0.2037 8 7 4.2149 2.6118 0.1458 9 6 5.6059 2.6134 0.2610 10 7 6.2583 1.4660 0.3477 11 6 7.5730 1.4221 0.4522 12 6 8.3218 2.5819 0.4861 13 6 7.6798 3.8091 0.3979 14 6 6.2966 3.8248 0.2832 15 8 5.6249 5.0038 0.1945 16 6 6.4067 6.1997 0.2247 17 6 5.4840 7.4151 0.1137 18 6 6.3083 8.6762 0.1462 19 1 7.3828 8.6168 0.2374 20 6 5.6907 9.9060 0.0606 21 7 4.3822 9.9783 -0.0490 22 14 6.7125 11.4692 0.1016 23 1 7.0989 11.8444 -1.2823 24 1 5.9153 12.5658 0.7075 25 1 7.9355 11.2401 0.9121 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1252 -1.3968 32 1 1.9990 3.1541 -1.3074 33 1 2.0699 1.5875 -2.1491 34 1 3.7325 3.4509 0.0823 35 1 8.0702 0.4655 0.5165 36 1 9.3970 2.5343 0.5757 37 1 8.2433 4.7302 0.4176 38 1 6.9606 6.2480 1.1622 39 1 7.1064 6.1976 -0.6110 40 1 4.9304 7.3665 -0.8240 41 1 4.7840 7.4174 0.9493 42 1 3.9476 10.8435 -0.1096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171058429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:00 Heat of formation + Delta-G solvation = -51.368839 kcal Electronic energy + Delta-G solvation = -22923.123202 eV Core-core repulsion = 19482.313811 eV Total energy + Delta-G solvation = -3440.809392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91188 -39.47263 -37.79956 -35.59340 -34.77775 -33.48429 -31.65552 -30.76194 -29.93482 -28.81410 -25.58105 -25.38502 -23.80318 -22.85165 -21.73188 -20.77528 -19.74008 -18.33362 -17.52403 -17.12952 -16.18287 -15.92287 -15.75480 -15.44170 -15.03573 -14.61210 -14.56305 -14.35434 -13.93063 -13.64602 -13.47576 -12.88119 -12.73925 -12.41638 -12.31980 -12.02066 -11.94684 -11.84425 -11.71698 -11.07273 -11.00126 -10.98125 -10.83868 -10.69098 -10.67231 -10.10877 -10.05669 -9.77735 -9.41899 -9.20718 -8.97793 -8.53256 -7.65090 -6.18985 -4.23918 1.21681 1.45405 2.75503 2.92773 3.21856 3.28031 3.30255 3.53024 4.01994 4.32811 4.35781 4.57394 4.76026 4.77118 4.95521 5.05990 5.15499 5.17977 5.20702 5.29412 5.33339 5.43536 5.46973 5.65901 5.73107 5.80877 5.85695 5.89182 5.90930 6.06743 6.10047 6.17966 6.20543 6.37448 6.53459 6.64309 7.29982 7.33988 7.51534 7.63449 7.84602 8.09043 8.13458 8.38676 8.81228 9.41090 10.92416 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003548 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.322871 B = 7889.954413 C = 9609.301392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.149 4.149 6 C 0.507 3.493 7 O -0.482 6.482 8 N -0.652 5.652 9 C 0.328 3.672 10 N -0.444 5.444 11 C 0.074 3.926 12 C -0.161 4.161 13 C -0.148 4.148 14 C 0.066 3.934 15 O -0.316 6.316 16 C 0.066 3.934 17 C 0.027 3.973 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.423 0.577 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 -16.318 -0.123 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.131 4.131 4 H 0.118 0.882 5 C -0.206 4.206 6 C 0.293 3.707 7 O -0.352 6.352 8 N -0.300 5.300 9 C 0.095 3.905 10 N -0.160 5.160 11 C -0.082 4.082 12 C -0.182 4.182 13 C -0.175 4.175 14 C 0.015 3.985 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.010 4.010 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.261 0.739 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.647 -17.704 -0.117 17.901 hybrid contribution 1.104 2.355 0.046 2.601 sum -1.542 -15.349 -0.071 15.427 Atomic orbital electron populations 1.21847 0.95431 1.01816 1.02007 1.21339 0.95359 0.94015 1.03512 1.21388 0.91129 0.99650 1.00964 0.88220 1.21865 1.02513 1.00637 0.95627 1.20918 0.89996 0.83349 0.76438 1.90772 1.69568 1.30464 1.44352 1.43563 1.03815 1.10968 1.71657 1.17861 0.84921 0.87139 1.00549 1.67627 1.10074 1.24810 1.13446 1.22413 0.88347 0.98413 0.99048 1.21888 1.01268 0.92468 1.02586 1.21611 0.92739 0.99963 1.03176 1.19611 0.91594 0.86784 1.00540 1.86097 1.37295 1.12279 1.87180 1.23394 0.95824 0.81729 0.99844 1.19123 0.94843 0.88249 0.98810 1.20945 0.93398 0.90255 1.52073 0.92352 1.24976 0.95009 0.99307 0.94790 1.69964 1.08280 1.25271 1.49136 0.86484 0.80067 0.82484 0.78350 1.20456 1.21003 1.19749 0.92634 0.92346 0.92530 0.91279 0.91106 0.90948 0.91713 0.92014 0.73854 0.82663 0.84815 0.83763 0.92955 0.92963 0.95354 0.95351 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.10 -1.03 4.75 -26.73 -0.13 -1.15 16 3 C -0.11 -1.13 2.72 -91.78 -0.25 -1.38 16 4 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 6 C 0.51 7.29 7.12 -10.98 -0.08 7.21 16 7 O -0.48 -8.51 14.17 5.55 0.08 -8.43 16 8 N -0.65 -9.67 5.28 -11.29 -0.06 -9.73 16 9 C 0.33 5.53 7.45 -154.43 -1.15 4.38 16 10 N -0.44 -7.57 7.88 -12.22 -0.10 -7.66 16 11 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 12 C -0.16 -2.04 10.10 -39.44 -0.40 -2.43 16 13 C -0.15 -2.18 9.14 -39.17 -0.36 -2.54 16 14 C 0.07 1.11 6.72 -38.92 -0.26 0.85 16 15 O -0.32 -5.83 9.39 -19.66 -0.18 -6.02 16 16 C 0.07 1.30 4.70 37.16 0.17 1.48 16 17 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.53 -14.07 9.11 -34.44 -0.31 -14.39 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 22 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 31 H 0.07 0.54 6.56 -51.93 -0.34 0.19 16 32 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.42 5.63 7.46 -40.82 -0.30 5.32 16 35 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 38 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 39 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -31.79 350.27 -8.06 -39.86 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.28 Total: 2.70 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.52 Total: -6.87 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.58 Total: -42.08 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.11 Total: -14.45 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.79 -8.06 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171058429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.514 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds