Wall clock time and date at job start Tue Mar 31 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47116 * 2 1 4 4 H 1.09000 * 109.47066 * 55.00157 * 3 2 1 5 5 C 1.52996 * 109.47501 * 295.00092 * 3 2 1 6 6 C 1.50703 * 109.47029 * 175.00113 * 3 2 1 7 7 O 1.21283 * 119.99854 * 0.02562 * 6 3 2 8 8 N 1.34776 * 119.99773 * 180.02562 * 6 3 2 9 9 C 1.39584 * 119.99545 * 179.97438 * 8 6 3 10 10 N 1.32271 * 119.72915 * 0.02562 * 9 8 6 11 11 C 1.31955 * 121.69162 * 179.70903 * 10 9 8 12 12 C 1.38088 * 120.95362 * 0.53593 * 11 10 9 13 13 C 1.38783 * 119.35398 * 359.47549 * 12 11 10 14 14 C 1.38801 * 118.44449 * 0.25126 * 13 12 11 15 15 O 1.35976 * 120.49468 * 179.97438 * 14 13 12 16 16 C 1.42903 * 117.00045 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47299 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47268 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99542 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00130 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46887 * 89.99925 * 22 20 18 24 24 H 1.48497 * 109.46825 * 210.00014 * 22 20 18 25 25 H 1.48496 * 109.47137 * 330.00043 * 22 20 18 26 26 H 1.08999 * 109.47017 * 300.00244 * 1 2 3 27 27 H 1.09001 * 109.46785 * 59.99874 * 1 2 3 28 28 H 1.08999 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46907 * 240.00024 * 2 1 3 30 30 H 1.08994 * 109.46978 * 120.00414 * 2 1 3 31 31 H 1.09001 * 109.46909 * 59.99723 * 5 3 2 32 32 H 1.08999 * 109.47357 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47013 * 300.00096 * 5 3 2 34 34 H 0.96998 * 120.00382 * 0.02562 * 8 6 3 35 35 H 1.08003 * 119.52523 * 180.26451 * 11 10 9 36 36 H 1.08002 * 120.32577 * 179.75677 * 12 11 10 37 37 H 1.07999 * 120.77239 * 180.27565 * 13 12 11 38 38 H 1.08997 * 109.46925 * 300.00077 * 16 15 14 39 39 H 1.08998 * 109.47137 * 59.99668 * 16 15 14 40 40 H 1.08998 * 109.47065 * 300.00411 * 17 16 15 41 41 H 1.09006 * 109.46838 * 60.00226 * 17 16 15 42 42 H 0.97009 * 119.99926 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5420 1.4442 0.1238 7 8 4.1451 0.3950 0.2037 8 7 4.2149 2.6118 0.1458 9 6 5.6059 2.6134 0.2610 10 7 6.2583 1.4660 0.3477 11 6 7.5730 1.4221 0.4522 12 6 8.3218 2.5819 0.4861 13 6 7.6798 3.8091 0.3979 14 6 6.2966 3.8248 0.2832 15 8 5.6249 5.0038 0.1945 16 6 6.4067 6.1997 0.2247 17 6 5.4840 7.4151 0.1137 18 6 6.3083 8.6762 0.1462 19 1 7.3828 8.6168 0.2374 20 6 5.6907 9.9060 0.0606 21 7 4.3822 9.9783 -0.0490 22 14 6.7125 11.4692 0.1016 23 1 7.0989 11.8444 -1.2823 24 1 5.9153 12.5658 0.7075 25 1 7.9355 11.2401 0.9121 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1252 -1.3968 32 1 1.9990 3.1541 -1.3074 33 1 2.0699 1.5875 -2.1491 34 1 3.7325 3.4509 0.0823 35 1 8.0702 0.4655 0.5165 36 1 9.3970 2.5343 0.5757 37 1 8.2433 4.7302 0.4176 38 1 6.9606 6.2480 1.1622 39 1 7.1064 6.1976 -0.6110 40 1 4.9304 7.3665 -0.8240 41 1 4.7840 7.4174 0.9493 42 1 3.9476 10.8435 -0.1096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171058429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:56 Heat of formation + Delta-G solvation = -70.057670 kcal Electronic energy + Delta-G solvation = -22923.933611 eV Core-core repulsion = 19482.313811 eV Total energy + Delta-G solvation = -3441.619800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -42.09172 -40.64051 -39.13299 -36.46662 -35.97290 -35.44523 -32.91648 -32.32165 -31.01935 -29.90895 -27.17213 -26.39550 -25.06141 -24.08001 -23.02265 -22.16477 -20.77624 -19.59406 -18.88001 -18.26856 -18.02312 -17.20581 -17.03991 -16.53724 -16.45675 -16.07825 -15.59295 -15.42617 -15.18580 -14.68814 -14.42446 -14.35397 -14.17228 -13.70400 -13.54046 -13.31040 -13.00088 -12.80860 -12.74814 -12.60638 -12.52173 -12.43918 -11.86330 -11.74572 -11.71009 -11.63184 -11.59529 -11.42556 -11.19273 -10.60567 -10.41750 -10.14488 -8.86770 -8.25436 -6.37909 0.07645 0.27588 1.42852 1.43724 1.54597 1.64833 1.84958 2.10626 2.44435 2.86399 3.09905 3.33984 3.64340 3.80114 3.84756 3.96016 4.02973 4.12895 4.28879 4.32768 4.38463 4.45985 4.51246 4.60981 4.71117 4.74351 4.92371 4.95781 5.01608 5.10266 5.12821 5.20312 5.27076 5.31093 5.35602 5.49654 5.50585 5.53586 5.73552 6.08080 6.20351 6.32664 6.76781 6.93485 7.26305 7.32124 8.87120 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003548 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.322871 B = 7889.954413 C = 9609.301392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.103 4.103 4 H 0.117 0.883 5 C -0.145 4.145 6 C 0.503 3.497 7 O -0.520 6.520 8 N -0.652 5.652 9 C 0.308 3.692 10 N -0.475 5.475 11 C 0.072 3.928 12 C -0.145 4.145 13 C -0.149 4.149 14 C 0.040 3.960 15 O -0.328 6.328 16 C 0.083 3.917 17 C 0.030 3.970 18 C -0.545 4.545 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.427 0.573 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -16.322 0.005 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.124 4.124 4 H 0.135 0.865 5 C -0.203 4.203 6 C 0.291 3.709 7 O -0.392 6.392 8 N -0.300 5.300 9 C 0.077 3.923 10 N -0.190 5.190 11 C -0.084 4.084 12 C -0.166 4.166 13 C -0.176 4.176 14 C -0.010 4.010 15 O -0.242 6.242 16 C 0.009 3.991 17 C -0.007 4.007 18 C -0.583 4.583 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.184 1.184 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.266 0.734 35 H 0.203 0.797 36 H 0.193 0.807 37 H 0.175 0.825 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.234 -17.712 0.010 17.755 hybrid contribution 0.722 2.231 0.015 2.345 sum -0.511 -15.482 0.025 15.490 Atomic orbital electron populations 1.21817 0.93273 1.02608 1.02854 1.21307 0.97103 0.93264 1.02243 1.21456 0.88135 1.00496 1.02344 0.86481 1.21866 1.03914 1.00040 0.94461 1.21679 0.91504 0.82576 0.75136 1.90737 1.70694 1.31577 1.46207 1.43684 1.03564 1.11410 1.71391 1.18091 0.85725 0.87272 1.01255 1.67682 1.11788 1.25058 1.14508 1.23065 0.87597 1.00358 0.97428 1.22280 1.03162 0.90952 1.00199 1.21915 0.91913 1.01490 1.02242 1.19763 0.92696 0.85836 1.02728 1.86025 1.37529 1.12538 1.88096 1.22960 0.94497 0.80789 1.00841 1.18940 0.94941 0.90517 0.96282 1.21396 0.94208 0.91156 1.51534 0.91161 1.25947 0.96125 1.03026 0.94318 1.70098 1.10155 1.26201 1.50277 0.85370 0.78622 0.77931 0.78676 1.19733 1.20890 1.18420 0.91885 0.91330 0.91846 0.92426 0.92589 0.88642 0.92032 0.92773 0.73417 0.79720 0.80669 0.82532 0.91845 0.91825 0.97954 0.97977 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 71.98 0.70 -1.33 16 2 C -0.10 -1.97 4.75 30.59 0.15 -1.83 16 3 C -0.10 -2.11 2.72 -11.54 -0.03 -2.14 16 4 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 5 C -0.15 -2.56 8.84 71.98 0.64 -1.92 16 6 C 0.50 14.86 7.12 87.66 0.62 15.49 16 7 O -0.52 -18.95 14.17 -3.04 -0.04 -18.99 16 8 N -0.65 -19.96 5.28 -308.02 -1.63 -21.59 16 9 C 0.31 10.51 7.45 132.98 0.99 11.50 16 10 N -0.47 -16.04 7.88 -192.58 -1.52 -17.56 16 11 C 0.07 1.86 11.17 84.64 0.95 2.80 16 12 C -0.15 -3.24 10.10 22.36 0.23 -3.01 16 13 C -0.15 -4.11 9.14 22.53 0.21 -3.90 16 14 C 0.04 1.35 6.72 22.70 0.15 1.50 16 15 O -0.33 -12.30 9.39 -93.28 -0.88 -13.17 16 16 C 0.08 3.27 4.70 71.98 0.34 3.61 16 17 C 0.03 1.53 5.34 29.85 0.16 1.69 16 18 C -0.55 -29.03 9.11 25.60 0.23 -28.79 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -54.02 13.29 21.45 0.28 -53.74 16 22 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.80 6.56 -2.39 -0.02 0.79 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 31 H 0.09 1.24 6.56 -2.39 -0.02 1.23 16 32 H 0.06 1.12 7.57 -2.39 -0.02 1.11 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.43 11.87 7.46 -92.71 -0.69 11.18 16 35 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.16 3.87 6.44 -2.91 -0.02 3.85 16 38 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 39 H 0.06 2.33 7.70 -2.39 -0.02 2.31 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 42 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -70.11 350.27 4.36 -65.75 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.33 Total: 21.06 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.78 Total: -5.61 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -2.86 Total: -92.88 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.92 Total: -32.16 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -70.11 4.36 -65.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171058429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.308 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds