Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.35897 * 117.00481 * 180.02562 * 5 4 3 7 7 C 1.38821 * 120.01275 * 359.72205 * 6 5 4 8 8 C 1.38173 * 120.08789 * 179.72138 * 7 6 5 9 9 C 1.38157 * 120.13180 * 0.55631 * 8 7 6 10 10 C 1.38929 * 120.03217 * 359.71781 * 9 8 7 11 11 N 1.39664 * 120.04617 * 180.02562 * 10 9 8 12 12 C 1.46504 * 119.99630 * 359.97438 * 11 10 9 13 13 C 1.50706 * 109.46765 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00209 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00063 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99931 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46978 * 90.00311 * 20 18 16 22 22 H 1.48500 * 109.47280 * 210.00317 * 20 18 16 23 23 H 1.48502 * 109.47513 * 330.00390 * 20 18 16 24 24 C 1.38564 * 120.02346 * 180.02562 * 6 5 4 25 25 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 26 26 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 30 30 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 31 31 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 34 34 H 1.08000 * 119.95252 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.93164 * 180.27734 * 8 7 6 36 36 H 1.07999 * 119.98069 * 179.74516 * 9 8 7 37 37 H 0.97000 * 120.00446 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47492 * 299.99129 * 12 11 10 39 39 H 1.08996 * 109.47421 * 60.00534 * 12 11 10 40 40 H 0.97005 * 120.00373 * 359.97438 * 15 13 12 41 41 H 0.97007 * 119.99687 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.06257 * 359.97421 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7896 0.0012 6 6 5.3936 2.9678 0.0013 7 6 6.2396 1.8671 0.0067 8 6 7.6096 2.0464 0.0009 9 6 8.1423 3.3211 0.0015 10 6 7.3005 4.4264 0.0019 11 7 7.8387 5.7152 0.0019 12 6 9.2917 5.9022 0.0021 13 6 9.6085 7.3756 0.0014 14 8 8.7091 8.1893 0.0004 15 7 10.8913 7.7890 0.0009 16 6 11.1795 9.1294 -0.0002 17 1 10.3786 9.8539 -0.0003 18 6 12.5021 9.5556 -0.0002 19 7 13.4765 8.6740 0.0004 20 14 12.8948 11.3818 -0.0010 21 1 12.9986 11.8664 1.3989 22 1 14.1843 11.6106 -0.7010 23 1 11.8135 12.1204 -0.7015 24 6 5.9237 4.2480 0.0024 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9562 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 5.8262 0.8693 0.0103 35 1 8.2654 1.1882 0.0006 36 1 9.2135 3.4584 0.0012 37 1 7.2504 6.4865 0.0018 38 1 9.7176 5.4391 0.8922 39 1 9.7178 5.4390 -0.8878 40 1 11.6107 7.1383 0.0014 41 1 14.3998 8.9716 0.0001 42 1 5.2671 5.1054 0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175122182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -67.754166 kcal Electronic energy + Delta-G solvation = -21731.091232 eV Core-core repulsion = 18289.571320 eV Total energy + Delta-G solvation = -3441.519913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09642 -38.68783 -37.72825 -35.54042 -34.62531 -33.87719 -31.42122 -30.85504 -29.63717 -28.73920 -26.72301 -24.60332 -23.93464 -22.64345 -21.47360 -20.90383 -19.43101 -18.15794 -18.07438 -16.56652 -16.49350 -16.14565 -15.62182 -15.11502 -15.02898 -14.74784 -14.66083 -14.33255 -13.92416 -13.69612 -13.41566 -13.20666 -13.15296 -12.61497 -12.53615 -12.24447 -11.87960 -11.67605 -11.60561 -11.53262 -11.30793 -11.23585 -11.12475 -10.80151 -10.76146 -10.46559 -10.32255 -9.81440 -9.63669 -8.63265 -8.19914 -8.11333 -7.21022 -6.52955 -3.94677 1.62210 1.77022 3.01471 3.11140 3.21544 3.27046 3.72649 3.74771 4.02750 4.12714 4.50422 4.55442 4.67971 4.85306 4.88886 4.93662 5.05775 5.14886 5.15273 5.27006 5.35842 5.40384 5.42512 5.46468 5.55021 5.68871 5.72118 5.72839 5.82119 5.89207 5.90419 6.05038 6.10382 6.44027 6.45684 6.66497 6.73157 7.44999 7.46133 7.57784 7.92044 8.09138 8.44563 9.03974 9.37938 9.86433 10.64013 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049516 B = 0.002099 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.338046 B =13336.248664 C =13865.232470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.061 3.939 5 O -0.318 6.318 6 C 0.173 3.827 7 C -0.277 4.277 8 C -0.034 4.034 9 C -0.237 4.237 10 C 0.264 3.736 11 N -0.720 5.720 12 C 0.113 3.887 13 C 0.429 3.571 14 O -0.594 6.594 15 N -0.551 5.551 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.896 5.896 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.236 4.236 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.412 0.588 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.395 0.605 41 H 0.274 0.726 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.971 -18.528 -0.006 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.014 4.014 5 O -0.232 6.232 6 C 0.127 3.873 7 C -0.298 4.298 8 C -0.053 4.053 9 C -0.260 4.260 10 C 0.156 3.844 11 N -0.350 5.350 12 C -0.016 4.016 13 C 0.214 3.786 14 O -0.480 6.480 15 N -0.186 5.186 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.536 5.536 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.259 4.259 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.251 0.749 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.229 0.771 41 H 0.084 0.916 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.271 -17.747 -0.012 24.077 hybrid contribution 0.735 0.525 0.010 0.903 sum -15.536 -17.222 -0.001 23.194 Atomic orbital electron populations 1.21752 0.95252 1.01795 1.02134 1.21430 0.96365 0.95724 1.02385 1.21586 0.92836 0.97620 1.03778 1.22779 0.95002 0.82237 1.01394 1.86013 1.19647 1.28887 1.88640 1.18526 0.81567 0.93462 0.93720 1.20857 0.94278 0.97297 1.17323 1.20599 0.94064 0.96347 0.94256 1.20609 0.99421 0.91453 1.14535 1.17482 0.91100 0.85364 0.90408 1.44550 1.06122 1.04747 1.79538 1.20962 0.81949 0.96558 1.02082 1.19746 0.84142 0.89170 0.85503 1.90510 1.45797 1.54768 1.56957 1.41792 1.05281 1.08581 1.62912 1.19737 0.92902 0.82619 1.48190 0.87718 1.25309 0.95113 1.00461 0.96793 1.69608 1.00093 1.34399 1.49512 0.85812 0.77945 0.81777 0.78501 1.20263 1.20785 1.19328 1.19627 0.93108 0.95391 1.17808 0.92539 0.92533 0.92539 0.91691 0.91693 0.90832 0.90827 0.92124 0.92129 0.86379 0.86186 0.85885 0.74938 0.90506 0.90509 0.77125 0.91620 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.69 5.93 -26.74 -0.16 -0.85 16 3 C -0.12 -0.89 5.58 -26.74 -0.15 -1.04 16 4 C 0.06 0.56 4.74 37.16 0.18 0.73 16 5 O -0.32 -4.11 10.13 -19.42 -0.20 -4.31 16 6 C 0.17 2.42 6.68 -39.25 -0.26 2.16 16 7 C -0.28 -3.43 9.04 -39.39 -0.36 -3.79 16 8 C -0.03 -0.42 10.03 -39.64 -0.40 -0.81 16 9 C -0.24 -3.34 9.31 -39.36 -0.37 -3.71 16 10 C 0.26 4.14 6.65 -83.81 -0.56 3.58 16 11 N -0.72 -12.38 5.70 -59.82 -0.34 -12.72 16 12 C 0.11 1.98 5.39 -5.19 -0.03 1.96 16 13 C 0.43 9.86 7.85 -10.98 -0.09 9.78 16 14 O -0.59 -15.64 15.24 5.55 0.08 -15.56 16 15 N -0.55 -13.56 5.29 -10.96 -0.06 -13.61 16 16 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 17 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.71 13.05 55.50 0.72 -22.99 16 20 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.24 -3.59 9.83 -39.24 -0.39 -3.97 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 33 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 34 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 35 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.12 1.60 6.73 -52.49 -0.35 1.25 16 37 H 0.41 7.54 7.45 -40.82 -0.30 7.24 16 38 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 39 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 40 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -30.20 354.58 -8.16 -38.35 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.25 Total: 14.20 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.44 Total: -4.27 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.33 Total: -49.32 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.11 Total: -19.86 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.20 -8.16 -38.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175122182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.402 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds