Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.35897 * 117.00481 * 180.02562 * 5 4 3 7 7 C 1.38821 * 120.01275 * 359.72205 * 6 5 4 8 8 C 1.38173 * 120.08789 * 179.72138 * 7 6 5 9 9 C 1.38157 * 120.13180 * 0.55631 * 8 7 6 10 10 C 1.38929 * 120.03217 * 359.71781 * 9 8 7 11 11 N 1.39664 * 120.04617 * 180.02562 * 10 9 8 12 12 C 1.46504 * 119.99630 * 359.97438 * 11 10 9 13 13 C 1.50706 * 109.46765 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00209 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00063 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99931 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46978 * 90.00311 * 20 18 16 22 22 H 1.48500 * 109.47280 * 210.00317 * 20 18 16 23 23 H 1.48502 * 109.47513 * 330.00390 * 20 18 16 24 24 C 1.38564 * 120.02346 * 180.02562 * 6 5 4 25 25 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 26 26 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 30 30 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 31 31 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 34 34 H 1.08000 * 119.95252 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.93164 * 180.27734 * 8 7 6 36 36 H 1.07999 * 119.98069 * 179.74516 * 9 8 7 37 37 H 0.97000 * 120.00446 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47492 * 299.99129 * 12 11 10 39 39 H 1.08996 * 109.47421 * 60.00534 * 12 11 10 40 40 H 0.97005 * 120.00373 * 359.97438 * 15 13 12 41 41 H 0.97007 * 119.99687 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.06257 * 359.97421 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7896 0.0012 6 6 5.3936 2.9678 0.0013 7 6 6.2396 1.8671 0.0067 8 6 7.6096 2.0464 0.0009 9 6 8.1423 3.3211 0.0015 10 6 7.3005 4.4264 0.0019 11 7 7.8387 5.7152 0.0019 12 6 9.2917 5.9022 0.0021 13 6 9.6085 7.3756 0.0014 14 8 8.7091 8.1893 0.0004 15 7 10.8913 7.7890 0.0009 16 6 11.1795 9.1294 -0.0002 17 1 10.3786 9.8539 -0.0003 18 6 12.5021 9.5556 -0.0002 19 7 13.4765 8.6740 0.0004 20 14 12.8948 11.3818 -0.0010 21 1 12.9986 11.8664 1.3989 22 1 14.1843 11.6106 -0.7010 23 1 11.8135 12.1204 -0.7015 24 6 5.9237 4.2480 0.0024 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9562 -0.8899 32 1 3.9337 0.9284 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 5.8262 0.8693 0.0103 35 1 8.2654 1.1882 0.0006 36 1 9.2135 3.4584 0.0012 37 1 7.2504 6.4865 0.0018 38 1 9.7176 5.4391 0.8922 39 1 9.7178 5.4390 -0.8878 40 1 11.6107 7.1383 0.0014 41 1 14.3998 8.9716 0.0001 42 1 5.2671 5.1054 0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175122182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -86.515661 kcal Electronic energy + Delta-G solvation = -21731.904792 eV Core-core repulsion = 18289.571320 eV Total energy + Delta-G solvation = -3442.333472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12638 -40.33912 -38.92503 -36.41466 -36.01020 -35.40742 -33.39032 -31.84383 -30.65024 -29.63752 -28.20817 -26.24670 -24.76123 -23.67866 -22.21816 -21.82037 -21.15511 -20.03020 -19.24085 -17.96575 -17.30991 -17.28020 -16.90163 -16.54595 -16.36030 -16.03216 -15.93739 -15.62526 -15.32207 -14.49321 -14.44770 -14.41237 -14.22875 -13.87952 -13.66793 -13.55029 -13.21257 -12.99167 -12.80675 -12.48803 -12.44593 -12.20364 -12.13734 -11.96544 -11.87341 -11.66843 -11.58621 -11.44523 -10.90928 -10.55211 -10.10249 -9.25120 -8.52333 -8.38825 -6.02080 0.57112 0.70134 1.35371 1.41641 1.53808 1.91444 2.02987 2.27606 2.58563 2.96245 3.15030 3.16355 3.91055 3.94622 4.03542 4.15907 4.19341 4.26890 4.33764 4.36731 4.37486 4.45273 4.48928 4.51604 4.66616 4.69847 4.87512 4.91230 4.96638 5.06518 5.23537 5.33314 5.34709 5.37276 5.43256 5.45774 5.63897 5.71122 5.90086 6.33425 6.50522 6.55663 6.73941 7.03772 7.44140 7.96667 8.64399 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049516 B = 0.002099 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.338046 B =13336.248664 C =13865.232470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.118 4.118 4 C 0.054 3.946 5 O -0.336 6.336 6 C 0.165 3.835 7 C -0.270 4.270 8 C -0.029 4.029 9 C -0.246 4.246 10 C 0.246 3.754 11 N -0.733 5.733 12 C 0.130 3.870 13 C 0.428 3.572 14 O -0.632 6.632 15 N -0.558 5.558 16 C -0.341 4.341 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.913 5.913 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.274 1.274 24 C -0.256 4.256 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.402 0.598 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.401 0.599 41 H 0.280 0.720 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 -20.730 0.011 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.155 4.155 4 C -0.021 4.021 5 O -0.250 6.250 6 C 0.119 3.881 7 C -0.290 4.290 8 C -0.048 4.048 9 C -0.269 4.269 10 C 0.141 3.859 11 N -0.363 5.363 12 C 0.002 3.998 13 C 0.215 3.785 14 O -0.520 6.520 15 N -0.194 5.194 16 C -0.470 4.470 17 H 0.099 0.901 18 C -0.208 4.208 19 N -0.553 5.553 20 Si 0.818 3.182 21 H -0.196 1.196 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.280 4.280 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.152 0.848 37 H 0.239 0.761 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.235 0.765 41 H 0.090 0.910 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.947 -20.009 0.006 25.586 hybrid contribution 0.514 1.090 0.006 1.205 sum -15.433 -18.919 0.012 24.416 Atomic orbital electron populations 1.21766 0.94975 1.02343 1.01981 1.21416 0.96565 0.94398 1.03088 1.21594 0.91860 0.98851 1.03211 1.23072 0.95844 0.80695 1.02445 1.86004 1.19176 1.31353 1.88467 1.18667 0.82396 0.93459 0.93602 1.21214 0.94278 0.98025 1.15529 1.21003 0.94529 0.96693 0.92563 1.20857 0.99861 0.91663 1.14495 1.17644 0.91504 0.85052 0.91708 1.44515 1.05546 1.05184 1.81028 1.20844 0.82692 0.92267 1.04035 1.20672 0.83111 0.91378 0.83297 1.90482 1.46779 1.56708 1.58012 1.41815 1.06080 1.07945 1.63579 1.19699 0.93037 0.83631 1.50631 0.90125 1.26061 0.94471 1.04537 0.95752 1.69659 1.00473 1.35952 1.49203 0.84904 0.77837 0.76742 0.78708 1.19565 1.19363 1.19848 1.19722 0.93198 0.96059 1.19009 0.92731 0.92724 0.91632 0.90970 0.90972 0.91442 0.91435 0.90966 0.90968 0.83606 0.82807 0.84823 0.76094 0.88367 0.88377 0.76486 0.91015 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.10 5.93 30.59 0.18 -0.92 16 3 C -0.12 -1.60 5.58 30.59 0.17 -1.43 16 4 C 0.05 0.88 4.74 71.98 0.34 1.22 16 5 O -0.34 -8.43 10.13 -92.39 -0.94 -9.36 16 6 C 0.16 4.45 6.68 22.49 0.15 4.60 16 7 C -0.27 -5.94 9.04 22.39 0.20 -5.74 16 8 C -0.03 -0.63 10.03 22.23 0.22 -0.41 16 9 C -0.25 -6.44 9.31 22.42 0.21 -6.23 16 10 C 0.25 7.63 6.65 38.20 0.25 7.89 16 11 N -0.73 -25.43 5.70 -343.18 -1.96 -27.38 16 12 C 0.13 4.48 5.39 85.63 0.46 4.94 16 13 C 0.43 20.04 7.85 87.66 0.69 20.72 16 14 O -0.63 -34.41 15.24 -3.07 -0.05 -34.46 16 15 N -0.56 -27.94 5.29 -306.97 -1.62 -29.56 16 16 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 17 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 18 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 19 N -0.91 -47.89 13.05 21.66 0.28 -47.61 16 20 Si 0.99 42.05 29.55 68.60 2.03 44.07 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C -0.26 -7.89 9.83 22.49 0.22 -7.67 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 33 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 34 H 0.15 2.35 6.29 -2.91 -0.02 2.33 16 35 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.13 3.14 6.73 -2.91 -0.02 3.12 16 37 H 0.40 15.37 7.45 -92.71 -0.69 14.68 16 38 H 0.10 2.99 7.95 -2.39 -0.02 2.97 16 39 H 0.10 2.99 7.95 -2.39 -0.02 2.97 16 40 H 0.40 18.78 7.90 -92.70 -0.73 18.04 16 41 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 42 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -65.74 354.58 2.46 -63.28 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -0.39 Total: 42.80 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.10 Total: -1.77 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.30 Total: -104.56 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.98 Total: -43.82 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -65.74 2.46 -63.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175122182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.236 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds