Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47413 * 2 1 4 4 C 1.52995 * 109.47413 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47595 * 179.97438 * 4 3 2 6 6 C 1.36004 * 117.00364 * 179.97438 * 5 4 3 7 7 C 1.38508 * 120.08172 * 359.97438 * 6 5 4 8 8 C 1.38285 * 120.01969 * 180.02562 * 7 6 5 9 9 C 1.38255 * 120.17880 * 0.02562 * 8 7 6 10 10 C 1.38217 * 120.16301 * 359.97438 * 9 8 7 11 11 C 1.38729 * 119.97977 * 0.02562 * 10 9 8 12 12 N 1.39959 * 120.09002 * 179.97438 * 11 10 9 13 13 C 1.46504 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50699 * 109.47213 * 180.02562 * 13 12 11 15 15 O 1.21295 * 119.99813 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00231 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00245 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99684 * 359.97438 * 17 16 14 19 19 C 1.38944 * 119.99672 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99900 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00600 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47162 * 89.99876 * 21 19 17 23 23 H 1.48493 * 109.47582 * 209.99978 * 21 19 17 24 24 H 1.48501 * 109.47160 * 330.00239 * 21 19 17 25 25 H 1.08997 * 109.47415 * 300.00326 * 1 2 3 26 26 H 1.09005 * 109.46606 * 60.00394 * 1 2 3 27 27 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47137 * 239.99232 * 2 1 3 29 29 H 1.09005 * 109.46606 * 119.99606 * 2 1 3 30 30 H 1.08997 * 109.47096 * 59.99479 * 3 2 1 31 31 H 1.09005 * 109.46913 * 299.99418 * 3 2 1 32 32 H 1.08997 * 109.47415 * 59.99674 * 4 3 2 33 33 H 1.09010 * 109.47027 * 299.99800 * 4 3 2 34 34 H 1.08007 * 119.98777 * 0.03715 * 7 6 5 35 35 H 1.07997 * 119.90476 * 180.27859 * 8 7 6 36 36 H 1.07994 * 119.91483 * 179.97438 * 9 8 7 37 37 H 1.07998 * 120.01004 * 180.02562 * 10 9 8 38 38 H 0.96998 * 120.00271 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.46734 * 299.99685 * 13 12 11 40 40 H 1.08996 * 109.46988 * 59.99833 * 13 12 11 41 41 H 0.97003 * 119.99913 * 359.97438 * 16 14 13 42 42 H 0.96997 * 120.00164 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.3947 2.9679 0.0010 7 6 6.2400 1.8706 0.0031 8 6 7.6107 2.0533 0.0047 9 6 8.1418 3.3297 0.0047 10 6 7.3052 4.4300 0.0026 11 6 5.9291 4.2545 0.0011 12 7 5.0798 5.3669 -0.0005 13 6 5.6438 6.7191 -0.0010 14 6 4.5259 7.7297 -0.0020 15 8 3.3716 7.3571 -0.0028 16 7 4.8086 9.0474 -0.0032 17 6 3.7916 9.9668 -0.0047 18 1 2.7639 9.6351 -0.0054 19 6 4.0833 11.3253 -0.0053 20 7 3.1084 12.2066 -0.0063 21 14 5.8609 11.8991 -0.0035 22 1 6.3339 12.0501 -1.4031 23 1 5.9587 13.2055 0.6957 24 1 6.7036 10.8978 0.6984 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.9337 0.9284 -0.8890 33 1 3.9329 0.9287 0.8910 34 1 5.8284 0.8721 0.0033 35 1 8.2681 1.1964 0.0017 36 1 9.2129 3.4675 0.0063 37 1 7.7227 5.4260 0.0023 38 1 4.1178 5.2428 -0.0019 39 1 6.2571 6.8572 0.8895 40 1 6.2586 6.8559 -0.8905 41 1 5.7318 9.3454 -0.0030 42 1 3.3120 13.1550 -0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175127070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -57.770475 kcal Electronic energy + Delta-G solvation = -22458.032753 eV Core-core repulsion = 19016.945765 eV Total energy + Delta-G solvation = -3441.086987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17576 -38.62530 -37.58573 -35.22664 -35.05985 -33.97593 -31.78640 -30.38306 -29.90834 -28.89071 -26.69414 -24.56671 -23.96521 -21.93377 -21.77709 -20.88792 -19.51018 -18.61364 -18.06177 -16.95638 -16.44805 -15.96950 -15.48836 -15.06586 -15.04030 -14.70637 -14.65996 -14.32473 -13.93321 -13.65769 -13.33681 -13.22885 -13.08002 -12.51107 -12.47499 -12.33832 -12.13451 -11.91440 -11.59335 -11.41635 -11.24852 -11.20652 -11.08827 -10.84321 -10.65636 -10.64755 -10.04844 -9.94849 -9.67222 -8.72174 -8.44961 -8.28591 -6.97414 -6.38832 -3.91305 1.49493 1.70706 2.98451 3.02936 3.11491 3.17698 3.59166 3.64671 3.95637 4.04095 4.59643 4.64462 4.64588 4.81213 4.93816 5.01005 5.03504 5.12300 5.15092 5.29668 5.32389 5.50310 5.52946 5.55115 5.55720 5.61505 5.72116 5.75655 5.79153 5.86960 5.91134 5.97194 6.07539 6.24755 6.42732 6.68155 6.87055 7.22138 7.47286 7.69984 8.01812 8.17056 8.48302 8.84421 9.31928 9.67124 10.73695 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.003372 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.896219 B = 8300.891461 C =10138.433817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.065 3.935 5 O -0.316 6.316 6 C 0.053 3.947 7 C -0.163 4.163 8 C -0.154 4.154 9 C -0.104 4.104 10 C -0.178 4.178 11 C 0.208 3.792 12 N -0.721 5.721 13 C 0.112 3.888 14 C 0.440 3.560 15 O -0.573 6.573 16 N -0.580 5.580 17 C -0.309 4.309 18 H 0.121 0.879 19 C 0.044 3.956 20 N -0.876 5.876 21 Si 0.880 3.120 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.268 1.268 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.417 0.583 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.373 0.627 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -22.039 0.000 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.160 4.160 4 C -0.010 4.010 5 O -0.230 6.230 6 C 0.004 3.996 7 C -0.183 4.183 8 C -0.174 4.174 9 C -0.122 4.122 10 C -0.202 4.202 11 C 0.102 3.898 12 N -0.353 5.353 13 C -0.017 4.017 14 C 0.226 3.774 15 O -0.456 6.456 16 N -0.218 5.218 17 C -0.437 4.437 18 H 0.138 0.862 19 C -0.160 4.160 20 N -0.515 5.515 21 Si 0.706 3.294 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.193 1.193 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.257 0.743 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.395 -21.688 0.001 22.612 hybrid contribution 1.169 0.452 0.016 1.253 sum 7.564 -21.236 0.017 22.543 Atomic orbital electron populations 1.21755 0.95225 1.01675 1.02334 1.21418 0.96429 0.95741 1.02135 1.21592 0.92736 0.97520 1.04144 1.22721 0.95203 0.82255 1.00833 1.86029 1.18676 1.28602 1.89700 1.18400 0.82648 0.92417 1.06094 1.20926 0.94177 0.96998 1.06159 1.20594 0.94020 0.96976 1.05852 1.20753 0.99106 0.92036 1.00345 1.20519 0.90400 0.99681 1.09607 1.17269 0.90307 0.84662 0.97544 1.44379 1.09065 1.01259 1.80634 1.20951 0.95916 0.82973 1.01870 1.19654 0.89808 0.83162 0.84759 1.90559 1.21087 1.79032 1.54955 1.42127 1.08432 1.05275 1.65975 1.19441 0.90141 0.85666 1.48491 0.86159 1.25061 0.98112 0.95532 0.97289 1.69621 1.31461 1.01969 1.48493 0.86660 0.84225 0.79457 0.79038 1.19449 1.20022 1.19318 0.92448 0.92442 0.92633 0.91834 0.91837 0.90653 0.90646 0.92490 0.92481 0.85987 0.86602 0.86323 0.85484 0.74346 0.90650 0.90639 0.79386 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.89 5.93 -26.74 -0.16 -1.05 16 3 C -0.12 -1.20 5.58 -26.74 -0.15 -1.34 16 4 C 0.07 0.70 4.74 37.16 0.18 0.87 16 5 O -0.32 -4.66 9.38 -19.75 -0.19 -4.85 16 6 C 0.05 0.78 6.70 -39.08 -0.26 0.51 16 7 C -0.16 -1.99 9.04 -39.46 -0.36 -2.35 16 8 C -0.15 -1.74 10.04 -39.56 -0.40 -2.14 16 9 C -0.10 -1.20 10.04 -39.58 -0.40 -1.60 16 10 C -0.18 -2.39 9.31 -39.41 -0.37 -2.76 16 11 C 0.21 3.24 6.67 -83.56 -0.56 2.68 16 12 N -0.72 -12.65 5.70 -59.67 -0.34 -12.99 16 13 C 0.11 1.91 5.40 -5.19 -0.03 1.88 16 14 C 0.44 9.97 7.85 -10.99 -0.09 9.89 16 15 O -0.57 -15.31 15.24 5.54 0.08 -15.22 16 16 N -0.58 -13.63 5.09 -10.97 -0.06 -13.68 16 17 C -0.31 -8.65 10.16 -14.94 -0.15 -8.80 16 18 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 19 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 20 N -0.88 -25.30 13.96 55.50 0.77 -24.52 16 21 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 33 H 0.06 0.54 7.66 -51.92 -0.40 0.14 16 34 H 0.12 1.21 6.30 -52.48 -0.33 0.88 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.52 6.74 -52.49 -0.35 1.17 16 38 H 0.42 8.18 6.80 -40.82 -0.28 7.90 16 39 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 40 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 41 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 42 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -32.06 350.37 -7.80 -39.86 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -6.18 Total: 15.70 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.46 Total: -3.85 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.38 Total: -51.19 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.10 Total: -20.07 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.06 -7.80 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175127070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds