Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47413 * 2 1 4 4 C 1.52995 * 109.47413 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47595 * 179.97438 * 4 3 2 6 6 C 1.36004 * 117.00364 * 179.97438 * 5 4 3 7 7 C 1.38508 * 120.08172 * 359.97438 * 6 5 4 8 8 C 1.38285 * 120.01969 * 180.02562 * 7 6 5 9 9 C 1.38255 * 120.17880 * 0.02562 * 8 7 6 10 10 C 1.38217 * 120.16301 * 359.97438 * 9 8 7 11 11 C 1.38729 * 119.97977 * 0.02562 * 10 9 8 12 12 N 1.39959 * 120.09002 * 179.97438 * 11 10 9 13 13 C 1.46504 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50699 * 109.47213 * 180.02562 * 13 12 11 15 15 O 1.21295 * 119.99813 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00231 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00245 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99684 * 359.97438 * 17 16 14 19 19 C 1.38944 * 119.99672 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99900 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00600 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47162 * 89.99876 * 21 19 17 23 23 H 1.48493 * 109.47582 * 209.99978 * 21 19 17 24 24 H 1.48501 * 109.47160 * 330.00239 * 21 19 17 25 25 H 1.08997 * 109.47415 * 300.00326 * 1 2 3 26 26 H 1.09005 * 109.46606 * 60.00394 * 1 2 3 27 27 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47137 * 239.99232 * 2 1 3 29 29 H 1.09005 * 109.46606 * 119.99606 * 2 1 3 30 30 H 1.08997 * 109.47096 * 59.99479 * 3 2 1 31 31 H 1.09005 * 109.46913 * 299.99418 * 3 2 1 32 32 H 1.08997 * 109.47415 * 59.99674 * 4 3 2 33 33 H 1.09010 * 109.47027 * 299.99800 * 4 3 2 34 34 H 1.08007 * 119.98777 * 0.03715 * 7 6 5 35 35 H 1.07997 * 119.90476 * 180.27859 * 8 7 6 36 36 H 1.07994 * 119.91483 * 179.97438 * 9 8 7 37 37 H 1.07998 * 120.01004 * 180.02562 * 10 9 8 38 38 H 0.96998 * 120.00271 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.46734 * 299.99685 * 13 12 11 40 40 H 1.08996 * 109.46988 * 59.99833 * 13 12 11 41 41 H 0.97003 * 119.99913 * 359.97438 * 16 14 13 42 42 H 0.96997 * 120.00164 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.3947 2.9679 0.0010 7 6 6.2400 1.8706 0.0031 8 6 7.6107 2.0533 0.0047 9 6 8.1418 3.3297 0.0047 10 6 7.3052 4.4300 0.0026 11 6 5.9291 4.2545 0.0011 12 7 5.0798 5.3669 -0.0005 13 6 5.6438 6.7191 -0.0010 14 6 4.5259 7.7297 -0.0020 15 8 3.3716 7.3571 -0.0028 16 7 4.8086 9.0474 -0.0032 17 6 3.7916 9.9668 -0.0047 18 1 2.7639 9.6351 -0.0054 19 6 4.0833 11.3253 -0.0053 20 7 3.1084 12.2066 -0.0063 21 14 5.8609 11.8991 -0.0035 22 1 6.3339 12.0501 -1.4031 23 1 5.9587 13.2055 0.6957 24 1 6.7036 10.8978 0.6984 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.9337 0.9284 -0.8890 33 1 3.9329 0.9287 0.8910 34 1 5.8284 0.8721 0.0033 35 1 8.2681 1.1964 0.0017 36 1 9.2129 3.4675 0.0063 37 1 7.7227 5.4260 0.0023 38 1 4.1178 5.2428 -0.0019 39 1 6.2571 6.8572 0.8895 40 1 6.2586 6.8559 -0.8905 41 1 5.7318 9.3454 -0.0030 42 1 3.3120 13.1550 -0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175127070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -79.741481 kcal Electronic energy + Delta-G solvation = -22458.985487 eV Core-core repulsion = 19016.945765 eV Total energy + Delta-G solvation = -3442.039722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20304 -40.37772 -38.60633 -36.46772 -35.96090 -35.77991 -33.84822 -31.29853 -30.97640 -29.83528 -28.13672 -26.07470 -25.02413 -22.88793 -22.67631 -21.80152 -21.33898 -20.39090 -19.22772 -18.19498 -17.34170 -17.29704 -16.91881 -16.63069 -16.42099 -15.86688 -15.65296 -15.42709 -14.99032 -14.95266 -14.56941 -14.44827 -14.21950 -14.12226 -13.87234 -13.65758 -13.11978 -13.01166 -12.81595 -12.45902 -12.43569 -12.12630 -12.00299 -11.98262 -11.80219 -11.71123 -11.58836 -11.45268 -11.02731 -10.64305 -10.33250 -9.40047 -8.46261 -8.08631 -6.09117 0.54786 0.73832 1.30005 1.34268 1.44536 1.80838 2.19634 2.21557 2.42108 2.97478 2.99926 3.09845 3.84403 3.90225 4.00423 4.05281 4.12929 4.22631 4.29822 4.33927 4.35444 4.47584 4.47848 4.60052 4.63361 4.73145 4.83019 4.89364 4.94334 5.04141 5.19498 5.29093 5.30403 5.40896 5.46581 5.52890 5.75819 5.85247 5.98524 6.18283 6.49234 6.63799 6.77623 6.84214 7.28730 7.81042 8.70887 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.003372 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.896219 B = 8300.891461 C =10138.433817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.061 3.939 5 O -0.345 6.345 6 C 0.031 3.969 7 C -0.166 4.166 8 C -0.147 4.147 9 C -0.105 4.105 10 C -0.180 4.180 11 C 0.174 3.826 12 N -0.740 5.740 13 C 0.127 3.873 14 C 0.440 3.560 15 O -0.622 6.622 16 N -0.577 5.577 17 C -0.335 4.335 18 H 0.055 0.945 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.965 3.035 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.228 1.228 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.401 0.599 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.394 0.606 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.831 -23.870 0.045 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.159 4.159 4 C -0.013 4.013 5 O -0.261 6.261 6 C -0.017 4.017 7 C -0.185 4.185 8 C -0.167 4.167 9 C -0.123 4.123 10 C -0.203 4.203 11 C 0.071 3.929 12 N -0.373 5.373 13 C -0.001 4.001 14 C 0.228 3.772 15 O -0.508 6.508 16 N -0.218 5.218 17 C -0.464 4.464 18 H 0.074 0.926 19 C -0.211 4.211 20 N -0.569 5.569 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.151 1.151 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.237 0.763 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.230 0.770 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.913 -23.569 0.047 25.973 hybrid contribution -0.313 0.870 -0.003 0.925 sum 10.600 -22.699 0.045 25.052 Atomic orbital electron populations 1.21779 0.95189 1.02440 1.01783 1.21395 0.96411 0.94014 1.03234 1.21607 0.92608 0.99005 1.02667 1.22929 0.95346 0.81036 1.02034 1.86007 1.19273 1.30820 1.89980 1.18736 0.82956 0.93078 1.06913 1.21242 0.94600 0.97266 1.05377 1.21053 0.93942 0.98129 1.03585 1.21154 1.00512 0.91553 0.99123 1.20822 0.89546 1.01197 1.08772 1.17624 0.91090 0.84374 0.99805 1.44364 1.08488 1.01869 1.82565 1.20925 0.93462 0.81104 1.04574 1.20791 0.90691 0.83701 0.81988 1.90540 1.23986 1.79977 1.56281 1.41898 1.08362 1.04984 1.66555 1.19007 0.88888 0.87461 1.51006 0.92646 1.26166 1.04668 0.94708 0.95567 1.69800 1.35058 1.02714 1.49373 0.85365 0.76563 0.79476 0.80170 1.17905 1.19855 1.15066 0.93046 0.93040 0.91160 0.90678 0.90680 0.92162 0.92156 0.91133 0.91125 0.83899 0.83524 0.83266 0.84051 0.76263 0.87712 0.87618 0.77009 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 71.98 0.71 -1.47 16 2 C -0.11 -1.59 5.93 30.59 0.18 -1.41 16 3 C -0.12 -2.45 5.58 30.59 0.17 -2.28 16 4 C 0.06 1.29 4.74 71.98 0.34 1.63 16 5 O -0.35 -10.46 9.38 -93.59 -0.88 -11.34 16 6 C 0.03 0.90 6.70 22.59 0.15 1.05 16 7 C -0.17 -3.63 9.04 22.35 0.20 -3.43 16 8 C -0.15 -2.74 10.04 22.28 0.22 -2.51 16 9 C -0.10 -2.01 10.04 22.27 0.22 -1.78 16 10 C -0.18 -4.31 9.31 22.38 0.21 -4.10 16 11 C 0.17 5.25 6.67 38.22 0.25 5.51 16 12 N -0.74 -26.07 5.70 -342.68 -1.95 -28.02 16 13 C 0.13 4.16 5.40 85.63 0.46 4.62 16 14 C 0.44 20.29 7.85 87.66 0.69 20.97 16 15 O -0.62 -35.22 15.24 -3.08 -0.05 -35.27 16 16 N -0.58 -27.17 5.09 -306.99 -1.56 -28.74 16 17 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 18 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 19 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 20 N -0.93 -55.75 13.96 21.66 0.30 -55.45 16 21 Si 0.97 37.99 27.74 68.60 1.90 39.89 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.26 7.67 -2.39 -0.02 1.24 16 33 H 0.07 1.26 7.66 -2.38 -0.02 1.24 16 34 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.14 2.84 6.74 -2.91 -0.02 2.82 16 38 H 0.40 16.58 6.80 -92.71 -0.63 15.95 16 39 H 0.11 2.82 7.95 -2.39 -0.02 2.80 16 40 H 0.11 2.83 7.95 -2.39 -0.02 2.81 16 41 H 0.39 15.03 5.76 -92.71 -0.53 14.49 16 42 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -76.72 350.37 2.72 -74.01 By element: Atomic # 1 Polarization: 47.25 SS G_CDS: -0.19 Total: 47.06 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.14 Total: -2.13 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -3.22 Total: -112.20 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.93 Total: -46.61 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -76.72 2.72 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175127070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.735 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds