Wall clock time and date at job start Tue Mar 31 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47178 * 119.99891 * 2 1 3 5 5 O 1.42902 * 109.47084 * 240.00131 * 2 1 3 6 6 C 1.36008 * 117.00099 * 64.32190 * 5 2 1 7 7 C 1.38502 * 120.08202 * 354.45671 * 6 5 2 8 8 C 1.38286 * 120.02100 * 180.02562 * 7 6 5 9 9 C 1.38254 * 120.17786 * 359.97438 * 8 7 6 10 10 C 1.38226 * 120.16184 * 0.02562 * 9 8 7 11 11 C 1.38728 * 119.97621 * 359.67857 * 10 9 8 12 12 N 1.39969 * 120.08666 * 180.29526 * 11 10 9 13 13 C 1.46502 * 120.00209 * 0.30063 * 12 11 10 14 14 C 1.50700 * 109.47044 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00141 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99721 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99643 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00175 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99698 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47020 * 90.00500 * 21 19 17 23 23 H 1.48499 * 109.47279 * 210.00206 * 21 19 17 24 24 H 1.48497 * 109.47388 * 330.00238 * 21 19 17 25 25 H 1.08998 * 109.47714 * 79.08253 * 1 2 3 26 26 H 1.09002 * 109.46982 * 199.08116 * 1 2 3 27 27 H 1.08999 * 109.47121 * 319.07874 * 1 2 3 28 28 H 1.09000 * 109.46757 * 48.60210 * 3 2 1 29 29 H 1.08995 * 109.47262 * 168.60125 * 3 2 1 30 30 H 1.08997 * 109.46554 * 288.60206 * 3 2 1 31 31 H 1.08994 * 109.46894 * 60.00020 * 4 2 1 32 32 H 1.09005 * 109.46942 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47022 * 299.99739 * 4 2 1 34 34 H 1.08000 * 119.98766 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.90814 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.91993 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.00769 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99807 * 180.29915 * 12 11 10 39 39 H 1.08997 * 109.46944 * 300.00191 * 13 12 11 40 40 H 1.09002 * 109.46670 * 59.99587 * 13 12 11 41 41 H 0.96999 * 119.99547 * 0.02562 * 16 14 13 42 42 H 0.97007 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 2.0063 -0.6736 -1.1668 6 6 1.7170 -0.1064 -2.3686 7 6 0.8955 1.0070 -2.4311 8 6 0.6018 1.5824 -3.6537 9 6 1.1267 1.0497 -4.8166 10 6 1.9474 -0.0612 -4.7629 11 6 2.2513 -0.6401 -3.5393 12 7 3.0871 -1.7613 -3.4818 13 6 3.6476 -2.3212 -4.7141 14 6 4.5062 -3.5136 -4.3791 15 8 4.6366 -3.8617 -3.2245 16 7 5.1290 -4.1931 -5.3624 17 6 5.9105 -5.2774 -5.0575 18 1 6.0266 -5.5874 -4.0296 19 6 6.5522 -5.9783 -6.0713 20 7 6.4104 -5.6014 -7.3222 21 14 7.6175 -7.4554 -5.6559 22 1 6.7858 -8.6856 -5.6713 23 1 8.7042 -7.5801 -6.6603 24 1 8.2094 -7.2749 -4.3061 25 1 -0.3634 0.1946 -1.0090 26 1 -0.3633 -0.9712 0.3360 27 1 -0.3633 0.7765 0.6731 28 1 1.5203 2.0116 0.7709 29 1 3.1108 1.4493 0.2031 30 1 1.8520 1.8943 -0.9740 31 1 1.6766 -1.7488 1.2492 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -0.2073 2.1392 34 1 0.4835 1.4253 -1.5246 35 1 -0.0394 2.4502 -3.7003 36 1 0.8949 1.5027 -5.7692 37 1 2.3558 -0.4755 -5.6728 38 1 3.2953 -2.1676 -2.6259 39 1 2.8372 -2.6305 -5.3741 40 1 4.2544 -1.5657 -5.2132 41 1 5.0249 -3.9144 -6.2856 42 1 6.8587 -6.0904 -8.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175132450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:35 Heat of formation + Delta-G solvation = -34.112727 kcal Electronic energy + Delta-G solvation = -23248.142231 eV Core-core repulsion = 19808.081120 eV Total energy + Delta-G solvation = -3440.061110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72630 -38.58050 -37.72470 -35.03998 -34.06363 -33.73366 -31.35214 -30.37590 -29.34490 -27.57407 -27.42315 -26.44211 -24.38294 -22.81095 -21.37990 -20.32911 -19.33080 -18.05885 -17.63522 -16.88571 -15.85567 -15.75560 -15.33460 -14.95857 -14.68829 -14.65873 -14.25860 -14.11782 -13.94893 -13.71046 -13.34969 -12.95262 -12.59363 -12.53579 -12.29778 -12.03942 -11.94925 -11.90058 -11.67835 -11.64385 -11.54846 -11.11416 -10.80104 -10.64264 -10.43976 -10.38257 -10.28545 -9.81758 -9.59536 -8.56913 -8.26117 -8.07010 -6.87116 -6.49249 -3.90666 1.55971 1.79285 3.13590 3.23304 3.25909 3.29137 3.76055 3.77908 4.02270 4.16171 4.58926 4.66235 4.79983 4.92650 4.97701 5.15399 5.18998 5.21756 5.34269 5.38136 5.52011 5.55411 5.57799 5.65942 5.66859 5.74352 5.87297 5.90066 5.95502 5.97968 6.07508 6.09254 6.16190 6.36423 6.51493 6.76389 6.96628 7.36636 7.48567 7.78803 7.97866 8.26161 8.49633 9.08149 9.42689 9.91776 10.67944 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.003352 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.100415 B = 8351.357204 C = 9417.549024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.112 3.888 3 C -0.202 4.202 4 C -0.138 4.138 5 O -0.306 6.306 6 C 0.055 3.945 7 C -0.176 4.176 8 C -0.160 4.160 9 C -0.103 4.103 10 C -0.179 4.179 11 C 0.207 3.793 12 N -0.721 5.721 13 C 0.114 3.886 14 C 0.431 3.569 15 O -0.592 6.592 16 N -0.553 5.553 17 C -0.303 4.303 18 H 0.104 0.896 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.932 3.068 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.416 0.584 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 14.814 8.509 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.075 3.925 3 C -0.259 4.259 4 C -0.195 4.195 5 O -0.221 6.221 6 C 0.006 3.994 7 C -0.195 4.195 8 C -0.180 4.180 9 C -0.122 4.122 10 C -0.202 4.202 11 C 0.101 3.899 12 N -0.353 5.353 13 C -0.014 4.014 14 C 0.216 3.784 15 O -0.477 6.477 16 N -0.188 5.188 17 C -0.433 4.433 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.759 3.241 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.255 0.745 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.276 14.207 8.977 20.238 hybrid contribution 0.447 -0.547 -0.196 0.733 sum -10.829 13.660 8.781 19.519 Atomic orbital electron populations 1.22830 0.95283 1.03037 1.04099 1.21662 0.93558 0.92365 0.84962 1.22937 1.02504 0.96115 1.04336 1.21802 1.02362 1.01000 0.94376 1.86132 1.74651 1.49819 1.11516 1.18299 1.00464 0.96151 0.84444 1.21498 1.01292 0.97294 0.99431 1.20625 1.03695 1.01698 0.92018 1.20755 0.97568 0.95901 0.98009 1.20537 1.04603 0.99616 0.95487 1.17299 0.92171 0.89015 0.91399 1.44405 1.51313 1.29886 1.09662 1.20919 0.97194 0.95637 0.87669 1.19770 0.85547 0.86537 0.86515 1.90514 1.66945 1.70328 1.19936 1.41791 1.41982 1.26729 1.08320 1.19726 1.23390 1.04690 0.95468 0.87772 1.25297 0.98269 0.99493 0.94674 1.69611 1.43819 1.41078 0.99281 0.85824 0.79158 0.80722 0.78407 1.20290 1.20816 1.19334 0.89958 0.91646 0.91396 0.91389 0.91652 0.89450 0.91446 0.91448 0.90786 0.83884 0.86725 0.86444 0.85488 0.74492 0.90800 0.90815 0.77171 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 8.13 37.15 0.30 -1.57 16 2 C 0.11 1.26 1.11 -90.62 -0.10 1.16 16 3 C -0.20 -1.98 8.06 37.16 0.30 -1.68 16 4 C -0.14 -1.38 8.73 37.16 0.32 -1.06 16 5 O -0.31 -4.63 9.04 -19.77 -0.18 -4.81 16 6 C 0.05 0.82 6.07 -39.08 -0.24 0.58 16 7 C -0.18 -2.17 5.74 -39.47 -0.23 -2.40 16 8 C -0.16 -1.86 10.04 -39.56 -0.40 -2.26 16 9 C -0.10 -1.27 10.04 -39.58 -0.40 -1.66 16 10 C -0.18 -2.55 9.31 -39.40 -0.37 -2.91 16 11 C 0.21 3.36 6.67 -83.56 -0.56 2.80 16 12 N -0.72 -13.23 5.70 -59.66 -0.34 -13.57 16 13 C 0.11 2.10 5.40 -5.19 -0.03 2.07 16 14 C 0.43 10.21 7.85 -10.98 -0.09 10.13 16 15 O -0.59 -16.06 15.24 5.55 0.08 -15.98 16 16 N -0.55 -13.89 5.29 -10.96 -0.06 -13.95 16 17 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.08 0.85 4.87 -51.93 -0.25 0.60 16 26 H 0.06 0.63 7.99 -51.93 -0.41 0.21 16 27 H 0.07 0.49 7.82 -51.93 -0.41 0.09 16 28 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.09 0.91 4.40 -51.93 -0.23 0.68 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.14 1.46 3.62 -52.49 -0.19 1.27 16 35 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.68 6.74 -52.49 -0.35 1.32 16 38 H 0.42 8.46 6.80 -40.82 -0.28 8.18 16 39 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 40 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -30.78 339.55 -7.11 -37.89 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -5.73 Total: 17.59 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.71 Total: -4.76 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.33 Total: -50.86 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.09 Total: -20.79 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.78 -7.11 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175132450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.778 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds