Wall clock time and date at job start Tue Mar 31 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47178 * 119.99891 * 2 1 3 5 5 O 1.42902 * 109.47084 * 240.00131 * 2 1 3 6 6 C 1.36008 * 117.00099 * 64.32190 * 5 2 1 7 7 C 1.38502 * 120.08202 * 354.45671 * 6 5 2 8 8 C 1.38286 * 120.02100 * 180.02562 * 7 6 5 9 9 C 1.38254 * 120.17786 * 359.97438 * 8 7 6 10 10 C 1.38226 * 120.16184 * 0.02562 * 9 8 7 11 11 C 1.38728 * 119.97621 * 359.67857 * 10 9 8 12 12 N 1.39969 * 120.08666 * 180.29526 * 11 10 9 13 13 C 1.46502 * 120.00209 * 0.30063 * 12 11 10 14 14 C 1.50700 * 109.47044 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00141 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99721 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99643 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00175 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99698 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47020 * 90.00500 * 21 19 17 23 23 H 1.48499 * 109.47279 * 210.00206 * 21 19 17 24 24 H 1.48497 * 109.47388 * 330.00238 * 21 19 17 25 25 H 1.08998 * 109.47714 * 79.08253 * 1 2 3 26 26 H 1.09002 * 109.46982 * 199.08116 * 1 2 3 27 27 H 1.08999 * 109.47121 * 319.07874 * 1 2 3 28 28 H 1.09000 * 109.46757 * 48.60210 * 3 2 1 29 29 H 1.08995 * 109.47262 * 168.60125 * 3 2 1 30 30 H 1.08997 * 109.46554 * 288.60206 * 3 2 1 31 31 H 1.08994 * 109.46894 * 60.00020 * 4 2 1 32 32 H 1.09005 * 109.46942 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47022 * 299.99739 * 4 2 1 34 34 H 1.08000 * 119.98766 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.90814 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.91993 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.00769 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99807 * 180.29915 * 12 11 10 39 39 H 1.08997 * 109.46944 * 300.00191 * 13 12 11 40 40 H 1.09002 * 109.46670 * 59.99587 * 13 12 11 41 41 H 0.96999 * 119.99547 * 0.02562 * 16 14 13 42 42 H 0.97007 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 2.0063 -0.6736 -1.1668 6 6 1.7170 -0.1064 -2.3686 7 6 0.8955 1.0070 -2.4311 8 6 0.6018 1.5824 -3.6537 9 6 1.1267 1.0497 -4.8166 10 6 1.9474 -0.0612 -4.7629 11 6 2.2513 -0.6401 -3.5393 12 7 3.0871 -1.7613 -3.4818 13 6 3.6476 -2.3212 -4.7141 14 6 4.5062 -3.5136 -4.3791 15 8 4.6366 -3.8617 -3.2245 16 7 5.1290 -4.1931 -5.3624 17 6 5.9105 -5.2774 -5.0575 18 1 6.0266 -5.5874 -4.0296 19 6 6.5522 -5.9783 -6.0713 20 7 6.4104 -5.6014 -7.3222 21 14 7.6175 -7.4554 -5.6559 22 1 6.7858 -8.6856 -5.6713 23 1 8.7042 -7.5801 -6.6603 24 1 8.2094 -7.2749 -4.3061 25 1 -0.3634 0.1946 -1.0090 26 1 -0.3633 -0.9712 0.3360 27 1 -0.3633 0.7765 0.6731 28 1 1.5203 2.0116 0.7709 29 1 3.1108 1.4493 0.2031 30 1 1.8520 1.8943 -0.9740 31 1 1.6766 -1.7488 1.2492 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -0.2073 2.1392 34 1 0.4835 1.4253 -1.5246 35 1 -0.0394 2.4502 -3.7003 36 1 0.8949 1.5027 -5.7692 37 1 2.3558 -0.4755 -5.6728 38 1 3.2953 -2.1676 -2.6259 39 1 2.8372 -2.6305 -5.3741 40 1 4.2544 -1.5657 -5.2132 41 1 5.0249 -3.9144 -6.2856 42 1 6.8587 -6.0904 -8.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175132450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:35 Heat of formation + Delta-G solvation = -54.391989 kcal Electronic energy + Delta-G solvation = -23249.021605 eV Core-core repulsion = 19808.081120 eV Total energy + Delta-G solvation = -3440.940485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71450 -40.34243 -38.88232 -36.45115 -35.79556 -34.80597 -33.38375 -31.36495 -30.62131 -28.34392 -28.31634 -27.89226 -26.14065 -23.85927 -22.49763 -21.41427 -20.96918 -20.02194 -18.90900 -17.88733 -17.31726 -17.13574 -16.52392 -16.45078 -16.10907 -15.93720 -15.69946 -15.46460 -14.97598 -14.94601 -14.43759 -14.14581 -14.09235 -13.71634 -13.55388 -13.26391 -13.02158 -12.87925 -12.85382 -12.82193 -12.57920 -12.55738 -12.48056 -12.14393 -11.69620 -11.59499 -11.51376 -11.24346 -10.96708 -10.54779 -10.10713 -9.26324 -8.52763 -8.05734 -6.02596 0.55217 0.76204 1.34706 1.40449 1.53127 1.91036 2.19601 2.31962 2.54389 3.00211 3.14336 3.18270 3.77744 3.86713 4.01021 4.01700 4.18252 4.26555 4.33797 4.39626 4.48580 4.59298 4.61884 4.65989 4.70222 4.74450 4.84788 4.88585 4.90739 5.06249 5.14425 5.24264 5.33462 5.35742 5.38596 5.55934 5.77201 5.87014 6.01448 6.24610 6.49796 6.68089 6.89480 7.03327 7.43678 7.96679 8.64225 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.003352 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.100415 B = 8351.357204 C = 9417.549024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.138 4.138 5 O -0.337 6.337 6 C 0.041 3.959 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.107 4.107 10 C -0.185 4.185 11 C 0.170 3.830 12 N -0.737 5.737 13 C 0.132 3.868 14 C 0.428 3.572 15 O -0.631 6.631 16 N -0.559 5.559 17 C -0.340 4.340 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.914 5.914 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.268 1.268 24 H -0.273 1.273 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.400 0.600 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.987 16.627 8.302 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.062 3.938 3 C -0.254 4.254 4 C -0.195 4.195 5 O -0.252 6.252 6 C -0.008 4.008 7 C -0.192 4.192 8 C -0.171 4.171 9 C -0.125 4.125 10 C -0.208 4.208 11 C 0.067 3.933 12 N -0.370 5.370 13 C 0.004 3.996 14 C 0.216 3.784 15 O -0.519 6.519 16 N -0.195 5.195 17 C -0.469 4.469 18 H 0.098 0.902 19 C -0.209 4.209 20 N -0.554 5.554 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.193 1.193 24 H -0.198 1.198 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.238 0.762 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.235 0.765 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.629 16.070 8.733 22.226 hybrid contribution 0.771 -1.003 -0.084 1.268 sum -11.858 15.067 8.648 21.034 Atomic orbital electron populations 1.22793 0.93815 1.03817 1.04322 1.22022 0.94808 0.93076 0.83931 1.22901 1.02119 0.95355 1.04997 1.21852 1.01517 1.00805 0.95342 1.86108 1.75395 1.51209 1.12532 1.18563 1.01028 0.96953 0.84213 1.21807 1.00285 0.96207 1.00899 1.21096 1.02730 1.01932 0.91323 1.21122 0.96654 0.95085 0.99670 1.20777 1.04881 1.00210 0.94959 1.17657 0.93392 0.89270 0.92953 1.44332 1.52963 1.31242 1.08483 1.20773 0.96957 0.93561 0.88314 1.20688 0.84927 0.87197 0.85604 1.90481 1.68125 1.71654 1.21621 1.41815 1.42212 1.26636 1.08834 1.19690 1.25684 1.06664 0.94901 0.90228 1.26077 0.98774 1.01642 0.94378 1.69664 1.44030 1.41904 0.99824 0.84901 0.77738 0.77405 0.78134 1.19500 1.19260 1.19807 0.90680 0.92239 0.88465 0.88453 0.92830 0.89937 0.92580 0.92835 0.87779 0.81691 0.83401 0.83640 0.84942 0.76215 0.88880 0.88889 0.76541 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 8.13 71.98 0.58 -2.70 16 2 C 0.10 2.14 1.11 -10.79 -0.01 2.13 16 3 C -0.20 -3.51 8.06 71.98 0.58 -2.93 16 4 C -0.14 -2.73 8.73 71.98 0.63 -2.10 16 5 O -0.34 -10.45 9.04 -93.64 -0.85 -11.29 16 6 C 0.04 1.21 6.07 22.59 0.14 1.35 16 7 C -0.17 -3.92 5.74 22.34 0.13 -3.80 16 8 C -0.15 -3.01 10.04 22.28 0.22 -2.78 16 9 C -0.11 -2.32 10.04 22.27 0.22 -2.09 16 10 C -0.19 -5.06 9.31 22.38 0.21 -4.85 16 11 C 0.17 5.56 6.67 38.22 0.25 5.82 16 12 N -0.74 -28.04 5.70 -342.68 -1.95 -30.00 16 13 C 0.13 4.93 5.40 85.63 0.46 5.39 16 14 C 0.43 21.07 7.85 87.66 0.69 21.76 16 15 O -0.63 -36.02 15.24 -3.06 -0.05 -36.07 16 16 N -0.56 -28.94 5.29 -306.99 -1.62 -30.57 16 17 C -0.34 -19.42 9.68 84.04 0.81 -18.60 16 18 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 20 N -0.91 -48.87 13.05 21.66 0.28 -48.59 16 21 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H 0.07 1.40 4.87 -2.39 -0.01 1.39 16 26 H 0.06 1.08 7.99 -2.39 -0.02 1.07 16 27 H 0.10 1.07 7.82 -2.39 -0.02 1.05 16 28 H 0.10 1.13 7.89 -2.39 -0.02 1.11 16 29 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.08 1.54 4.40 -2.39 -0.01 1.53 16 31 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.17 2.91 3.62 -2.91 -0.01 2.90 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.13 3.33 6.74 -2.91 -0.02 3.31 16 38 H 0.40 17.38 6.80 -92.71 -0.63 16.75 16 39 H 0.09 3.08 7.94 -2.39 -0.02 3.06 16 40 H 0.09 3.08 7.96 -2.39 -0.02 3.06 16 41 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 42 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -68.89 339.55 2.92 -65.96 By element: Atomic # 1 Polarization: 49.45 SS G_CDS: -0.30 Total: 49.14 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.39 Total: -3.37 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -3.29 Total: -109.15 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.89 Total: -47.36 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.89 2.92 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175132450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.569 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds